| line |
true |
false |
branch |
|
18
|
0 |
0 |
unless ($string_text) |
|
25
|
0 |
0 |
if $string_text and not _is_fasta($string_text) |
|
26
|
0 |
0 |
if ($string_text) |
|
33
|
0 |
0 |
if (not $description_line =~ /^>/) { } |
|
38
|
0 |
0 |
if ($description_line =~ /^>gi\|/) { } |
|
|
0 |
0 |
elsif ($description_line =~ /^>sp\|/ or $description_line =~ /^>sptrembl\|/) { } |
|
|
0 |
0 |
elsif ($description_line =~ /^>tr\|/) { } |
|
|
0 |
0 |
elsif ($description_line =~ /^>[XY\d+]/) { } |
|
|
0 |
0 |
elsif ($description_line =~ /^>[0-9A-Za-z_]+\s?/) { } |
|
66
|
0 |
0 |
if ($description_line =~ /^IPI:/) { } |
|
|
0 |
0 |
elsif ($description_line =~ /^[A-Za-z][0-9][A-Z0-9a-z]{3}[0-9][\s\|]/) { } |
|
|
0 |
0 |
elsif ($description_line =~ /^[A-Za-z0-9_]+\s*?$/) { } |
|
76
|
0 |
0 |
unless ($f_db_nr{'SWISS-PROT'}) |
|
79
|
0 |
0 |
unless ($f_db_nr{'ENSEMBL'}) |
|
82
|
0 |
0 |
unless ($f_db_nr{'REFSEQ_XP'}) |
|
85
|
0 |
0 |
unless ($f_db_nr{'TREMBL'}) |
|
95
|
0 |
0 |
if ($description_line =~ /\|/) { } |
|
147
|
0 |
0 |
if ($desc =~ /^>/ and not $seq =~ /[^A-NP-Z\*\-]/i and length $seq > 0) |
|
203
|
0 |
0 |
unless $index == -1 |
|
224
|
0 |
0 |
unless ($initialized) |
|
232
|
0 |
0 |
if $high_part & 1 |
|
234
|
0 |
0 |
if $flag |
|
258
|
0 |
0 |
unless open W_SEQUENCE, ">$file" |
|
262
|
0 |
0 |
if $$self{'dbrefs'}{$dbkey} ne 'NULL' |
|
279
|
0 |
0 |
if $$self{'dbrefs'}{$dbkey} ne 'NULL' |
|
282
|
0 |
0 |
if $$self{'description'} |
|
295
|
0 |
0 |
if ($$self{'dbrefs'}{$db} and $$self{'dbrefs'}{$db} ne 'NULL') { } |
|
313
|
0 |
0 |
if $${$$self{'dbrefs'};}{$_} ne 'NULL' |
|
315
|
0 |
0 |
if $dbrefs ne ' ' |