| blib/lib/Bio/DB/USeq.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 62 | 111 | 55.8 |
| pod | 37 | 39 | 94.8 |
| line | count | pod | subroutine |
|---|---|---|---|
| 861 | 1 | n/a | BEGIN |
| 862 | 1 | n/a | BEGIN |
| 863 | 1 | n/a | BEGIN |
| 864 | 1 | n/a | BEGIN |
| 865 | 1 | n/a | BEGIN |
| 867 | 1 | n/a | BEGIN |
| 875 | 2 | Yes | new |
| 910 | 2 | Yes | open |
| 946 | 1 | Yes | clone |
| 960 | 9 | Yes | zip |
| 964 | 4 | No | name |
| 972 | 1 | Yes | seq_ids |
| 977 | 8 | Yes | length |
| 985 | 8 | Yes | stranded |
| 989 | 0 | Yes | attributes |
| 995 | 1 | Yes | attribute |
| 1006 | 1 | Yes | type |
| 1010 | 0 | Yes | version |
| 1014 | 0 | Yes | genome |
| 1018 | 1 | Yes | chr_stats |
| 1051 | 1 | Yes | chr_mean |
| 1057 | 0 | Yes | chr_stdev |
| 1065 | 0 | Yes | global_stats |
| 1114 | 0 | Yes | global_mean |
| 1119 | 0 | Yes | global_stdev |
| 1126 | 2 | Yes | slices |
| 1131 | 0 | Yes | slice_seq_id |
| 1137 | 1087 | Yes | slice_start |
| 1143 | 2020 | Yes | slice_end |
| 1149 | 4 | Yes | slice_strand |
| 1155 | 1020 | Yes | slice_type |
| 1161 | 6 | Yes | slice_obs_number |
| 1167 | 0 | Yes | slice_feature |
| 1187 | 1 | Yes | segment |
| 1205 | 2 | Yes | features |
| 1264 | 0 | No | get_features_by_type |
| 1270 | 0 | Yes | get_features_by_location |
| 1282 | 0 | Yes | get_feature_by_id |
| 1304 | 0 | Yes | get_feature_by_name |
| 1309 | 3 | Yes | get_seq_stream |
| 1339 | 1 | Yes | scores |
| 1371 | 0 | Yes | observations |
| 1403 | 1 | n/a | _parse_metadata |
| 1431 | 2 | n/a | _parse_members |
| 1503 | 5 | n/a | _get_coordinates |
| 1528 | 6 | n/a | _translate_coordinates_to_slices |
| 1566 | 6 | n/a | _clear_buffer |
| 1578 | 1016 | n/a | _load_slice |
| 1614 | 0 | n/a | _load_s_slice |
| 1638 | 0 | n/a | _load_sf_slice |
| 1662 | 0 | n/a | _load_st_slice |
| 1696 | 0 | n/a | _load_ss_slice |
| 1722 | 6 | n/a | _load_ssf_slice |
| 1748 | 0 | n/a | _load_sst_slice |
| 1780 | 1 | n/a | _load_ssft_slice |
| 1812 | 0 | n/a | _load_i_slice |
| 1836 | 0 | n/a | _load_if_slice |
| 1860 | 0 | n/a | _load_it_slice |
| 1894 | 0 | n/a | _load_ii_slice |
| 1920 | 0 | n/a | _load_iif_slice |
| 1946 | 0 | n/a | _load_iit_slice |
| 1978 | 0 | n/a | _load_iift_slice |
| 2010 | 0 | n/a | _load_is_slice |
| 2036 | 0 | n/a | _load_isf_slice |
| 2062 | 0 | n/a | _load_ist_slice |
| 2094 | 0 | n/a | _load_isft_slice |
| 2125 | 1000 | n/a | _mean_score |
| 2150 | 11 | n/a | _stat_summary |
| 2195 | 1 | n/a | _rewrite_metadata |
| 2231 | 2 | Yes | binMean |
| 2237 | 1 | Yes | binVariance |
| 2248 | 1 | Yes | binStdev |
| 2258 | 1 | n/a | BEGIN |
| 2261 | 13 | n/a | new |
| 2270 | 16 | n/a | type |
| 2275 | 0 | n/a | chr_stats |
| 2281 | 0 | n/a | chr_mean |
| 2287 | 0 | n/a | chr_stdev |
| 2293 | 0 | n/a | global_stats |
| 2299 | 0 | n/a | global_mean |
| 2305 | 0 | n/a | global_stdev |
| 2314 | 1 | n/a | BEGIN |
| 2317 | 1 | n/a | new |
| 2325 | 1 | n/a | scores |
| 2335 | 0 | n/a | features |
| 2348 | 1 | n/a | get_seq_stream |
| 2363 | 0 | n/a | slices |
| 2371 | 0 | n/a | coverage |
| 2378 | 0 | n/a | wiggle |
| 2385 | 0 | n/a | statistical_summary |
| 2392 | 0 | n/a | observations |
| 2403 | 1 | n/a | BEGIN |
| 2406 | 4 | n/a | new |
| 2486 | 10 | n/a | next_seq |
| 2499 | 0 | n/a | next_feature |
| 2504 | 6 | n/a | _next_region |
| 2545 | 2 | n/a | _next_wiggle |
| 2635 | 2 | n/a | _next_summary |
| 2663 | 1 | n/a | BEGIN |
| 2668 | 1 | n/a | new |
| 2678 | 1 | n/a | coverage |
| 2684 | 1 | n/a | wiggle |
| 2689 | 0 | n/a | gff3_string |
| 2705 | 0 | n/a | statistical_summary |
| 2738 | 0 | n/a | get_seq_stream |
| 2754 | 1 | n/a | BEGIN |
| 2757 | 1 | n/a | new |
| 2770 | 1 | n/a | statistical_summary |
| 2821 | 0 | n/a | score |
| 2830 | 0 | n/a | gff3_string |
| 2843 | 0 | n/a | get_seq_stream |