| line |
true |
false |
branch |
|
31
|
0 |
1 |
if defined $param{'-format'} |
|
33
|
0 |
1 |
if (defined $param{'-query'} and defined $param{'-filter'}) { } |
|
|
1 |
0 |
elsif (defined $param{'-query'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-filter'}) { } |
|
58
|
0 |
1 |
if defined $param{'-format'} |
|
60
|
1 |
0 |
if (defined $param{'-query'} and defined $param{'-filter'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-query'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-filter'}) { } |
|
85
|
0 |
0 |
if defined $param{'-format'} |
|
87
|
0 |
0 |
if (defined $param{'-query'} and $param{'-retrieve'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-query'}) { } |
|
108
|
0 |
1 |
if defined $param{'-format'} |
|
110
|
0 |
1 |
if (defined $param{'-query'} and $param{'-retrieve'}) { } |
|
|
0 |
1 |
elsif (defined $param{'-query'}) { } |
|
131
|
0 |
1 |
if defined $param{'-format'} |
|
133
|
1 |
0 |
if (defined $param{'-query'} and $param{'-retrieve'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-query'}) { } |
|
155
|
1 |
0 |
if (defined $param{'-chromosome'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-evidence'}) { } |
|
160
|
0 |
1 |
if ($chrom eq 'all') { } |
|
168
|
0 |
0 |
if ($param{'-evidence'} eq 'protein_level') { } |
|
|
0 |
0 |
elsif ($param{'-evidence'} eq 'transcript_level') { } |
|
|
0 |
0 |
elsif ($param{'-evidence'} eq 'homology') { } |
|
|
0 |
0 |
elsif ($param{'-evidence'} eq 'predicted') { } |
|
|
0 |
0 |
elsif ($param{'-evidence'} eq 'uncertain') { } |
|
193
|
0 |
0 |
if (defined $param{'-chromosome'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-phospho'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-nacetyl'}) { } |
|
217
|
0 |
0 |
if (defined $param{'-map'}) |
|
220
|
0 |
0 |
if ($db eq 'ensembl_gene') { } |
|
|
0 |
0 |
elsif ($db eq 'ensembl_protein') { } |
|
|
0 |
0 |
elsif ($db eq 'ensembl_unmapped') { } |
|
|
0 |
0 |
elsif ($db eq 'ensembl_transcript') { } |
|
|
0 |
0 |
elsif ($db eq 'ensembl_transcript_unmapped') { } |
|
|
0 |
0 |
elsif ($db eq 'geneid') { } |
|
|
0 |
0 |
elsif ($db eq 'hgnc') { } |
|
|
0 |
0 |
elsif ($db eq 'mgi') { } |
|
|
0 |
0 |
elsif ($db eq 'refseq') { } |
|
255
|
0 |
0 |
if (defined $param{'-chromosome'}) |
|
265
|
0 |
0 |
if ($prot =~ /^[A-Za-z|0-9\-]+\s+NX/) |