| line |
!l |
l&&!r |
l&&r |
condition |
|
228
|
0 |
0 |
0 |
$$hashref{'is_obsolete'} and not $self->factory->allow_obsolete
|
|
241
|
0 |
0 |
0 |
defined $base_start and defined $stop
|
|
|
0 |
0 |
0 |
defined $base_start and defined $stop and defined $db_id
|
|
302
|
0 |
0 |
0 |
$$hash_ref{'is_obsolete'} and not $self->factory->allow_obsolete
|
|
318
|
0 |
0 |
0 |
defined $interbase_start and $interbase_start < 0
|
|
325
|
0 |
0 |
0 |
defined $stop and defined $length
|
|
|
0 |
0 |
0 |
defined $stop and defined $length and $stop > $length
|
|
895
|
0 |
0 |
0 |
ref $self and $self->factory->do2Level
|
|
899
|
0 |
0 |
0 |
$sub_args[0] and $sub_args[0] =~ /^-/
|
|
907
|
0 |
0 |
0 |
ref $self and $sub_args[0]
|
|
|
0 |
0 |
0 |
ref $self and $sub_args[0] and $sub_args[0] =~ /^-/
|
|
|
0 |
0 |
0 |
defined $factory and $sub_args[0]
|
|
|
0 |
0 |
0 |
defined $factory and $sub_args[0] and $sub_args[0] =~ /^-/
|
|
942
|
0 |
0 |
0 |
$type_placeholder and not $types
|
|
990
|
0 |
0 |
0 |
$types and scalar @$types != 0
|
|
1010
|
0 |
0 |
0 |
$temp_source and $temp_dbxref
|
|
1031
|
0 |
0 |
0 |
$temp_source and $temp_dbxref
|
|
1044
|
0 |
0 |
0 |
not $srcfeature_id and defined $seq_id
|
|
1083
|
0 |
0 |
0 |
defined $refclass_feature_id and defined $srcfeature_id
|
|
1103
|
0 |
0 |
0 |
$factory->srcfeatureslice and $srcfeature_id
|
|
|
0 |
0 |
0 |
$factory->srcfeatureslice and $srcfeature_id and defined $interbase_start
|
|
|
0 |
0 |
0 |
$factory->srcfeatureslice and $srcfeature_id and defined $interbase_start and defined $rend
|
|
|
0 |
0 |
0 |
defined $interbase_start and defined $rend
|
|
1129
|
0 |
0 |
0 |
ref $self and $self->factory->organism_id
|
|
1137
|
0 |
0 |
0 |
$factory->recursivMapping and not $feature_id
|
|
1158
|
0 |
0 |
0 |
$feature_query->rows < 1 and $sql_types
|
|
|
0 |
0 |
0 |
$feature_query->rows < 1 and $sql_types and not defined $interbase_start
|
|
|
0 |
0 |
0 |
$feature_query->rows < 1 and $sql_types and not defined $interbase_start and not defined $rend
|
|
1200
|
0 |
0 |
0 |
$$hashref{'is_obsolete'} and not $self->factory->allow_obsolete
|
|
1202
|
0 |
0 |
0 |
$feature_id and defined $stop
|
|
|
0 |
0 |
0 |
$feature_id and defined $stop and $stop != $$hashref{'fmax'}
|
|
1211
|
0 |
0 |
0 |
$feature_id and defined $base_start
|
|
|
0 |
0 |
0 |
$feature_id and defined $base_start and defined $$hashref{'fmin'}
|
|
|
0 |
0 |
0 |
$feature_id and defined $base_start and defined $$hashref{'fmin'} and $base_start != $$hashref{'fmin'} + 1
|
|
1306
|
0 |
0 |
0 |
$_[0] and $_[0] =~ /^-/
|
|
1324
|
0 |
0 |
0 |
$type_placeholder and not $types
|
|
1363
|
0 |
0 |
0 |
$temp_source and $temp_dbxref
|
|
1384
|
0 |
0 |
0 |
$temp_source and $temp_dbxref
|
|
1490
|
0 |
0 |
0 |
$$hashref{'is_obsolete'} and not $self->factory->allow_obsolete
|
|
1494
|
0 |
0 |
0 |
defined $feat->feature_id and $feat->feature_id != $$hashref{'feature_id'}
|
|
1499
|
0 |
0 |
0 |
$feature_id and defined $stop
|
|
|
0 |
0 |
0 |
$feature_id and defined $stop and $stop != $$hashref{'fmax'}
|
|
1505
|
0 |
0 |
0 |
$feature_id and defined $base_start
|
|
|
0 |
0 |
0 |
$feature_id and defined $base_start and $base_start != $$hashref{'fmin'} + 1
|
|
1541
|
0 |
0 |
0 |
$feature_id and defined $stop
|
|
|
0 |
0 |
0 |
$feature_id and defined $stop and $stop != $$hashref{'sfmax'}
|
|
1547
|
0 |
0 |
0 |
$feature_id and defined $base_start
|
|
|
0 |
0 |
0 |
$feature_id and defined $base_start and $base_start != $$hashref{'sfmin'} + 1
|
|
1589
|
0 |
0 |
0 |
@features > 0 and $features[-1]->feature_id ne $feat->feature_id
|
|
1667
|
0 |
0 |
0 |
$has_start and $has_stop
|
|
|
0 |
0 |
0 |
$has_start and $has_stop and $base_start > $stop
|
|
|
0 |
0 |
0 |
$strand and $strand < 0
|