| line |
!l |
l&&!r |
l&&r |
condition |
|
106
|
6 |
1 |
0 |
$exons and ref($exons) =~ /ARRAY/i |
|
232
|
0 |
0 |
0 |
defined $len and not $len =~ /^[+-]?\d+$/ |
|
254
|
0 |
5 |
0 |
ref $value[0] and $value[0]->isa('Bio::SeqFeatureI') |
|
|
5 |
0 |
0 |
ref $value[0] and $value[0]->isa('Bio::SeqFeatureI') and $value[0]->location->isa('Bio::Location::SplitLocationI') |
|
261
|
0 |
0 |
5 |
ref $value[0] and $value[0]->isa('Bio::LocationI') |
|
270
|
0 |
3 |
2 |
defined $value[0]->strand and $value[0]->strand == -1 |
|
369
|
7 |
3 |
5 |
$exon->start <= 1 and $exon->end >= 1 |
|
495
|
0 |
0 |
3 |
ref $value and $value->isa('Bio::RangeI') |
|
532
|
0 |
35 |
0 |
ref $value and $value->isa('Bio::Location::Simple') || $value->isa('Bio::Location::SplitLocationI') || $value->isa('Bio::SeqFeatureI') |
|
553
|
31 |
4 |
0 |
defined $self->{'_nozero'} and $self->{'_nozero'} == 1 || $self->{'_nozero'} == 3 |
|
555
|
0 |
1 |
0 |
defined $value->start and $value->start < 1 |
|
557
|
0 |
1 |
0 |
defined $value->end and $value->end < 1 |
|
590
|
0 |
27 |
16 |
$value and $value->isa('Bio::Location::SplitLocationI') |
|
|
27 |
0 |
16 |
$value and $value->isa('Bio::Location::SplitLocationI') and $value->can('gap') |
|
594
|
0 |
43 |
0 |
$value and $self->verbose > 0 |
|
601
|
0 |
31 |
4 |
defined $value and defined $self->{'_nozero'} |
|
|
31 |
4 |
0 |
defined $value and defined $self->{'_nozero'} and $self->{'_nozero'} == 2 || $self->{'_nozero'} == 3 |
|
604
|
0 |
0 |
1 |
defined $value->start and $value->start < 1 |
|
606
|
0 |
0 |
1 |
defined $value->end and $value->end < 1 |
|
612
|
23 |
5 |
7 |
ref $value eq 'Bio::Coordinate::Result' and $value->each_match > 1 |
|
|
23 |
0 |
5 |
ref $value eq 'Bio::Coordinate::Result' and $value->each_match == 1 |
|
623
|
4 |
0 |
5 |
$prevloc->end == $loc->start - 1 and $prevloc->seq_id eq $loc->seq_id |
|
811
|
0 |
3 |
0 |
defined $value and $value->isa('Bio::Location::Simple') || $value->isa('Bio::Location::SplitLocationI') |
|
846
|
0 |
1 |
0 |
defined $value and $value->isa('Bio::Location::Simple') || $value->isa('Bio::Location::SplitLocationI') |
|
880
|
0 |
1 |
0 |
defined $value and $value->isa('Bio::Location::Simple') || $value->isa('Bio::Location::SplitLocationI') |
|
943
|
6 |
11 |
18 |
exists $self->{'_previous_path'} and $self->{'_previous_path'} eq "$start$end" |