| line |
true |
false |
branch |
|
111
|
0 |
4 |
if ($hash->{'map_file'}) { } |
|
|
4 |
0 |
elsif ($hash->{'id'}) { } |
|
119
|
0 |
0 |
if $self->debug |
|
140
|
0 |
0 |
unless $codon =~ /^[ATCG]{3}$/ |
|
143
|
0 |
0 |
if $self->_is_stop_aa($AA) |
|
150
|
0 |
0 |
if ($totalCodonNum < 64) |
|
163
|
0 |
4 |
unless $self->_is_valid_gc_id($id) |
|
177
|
4 |
3752 |
if /^__END__/ |
|
178
|
2688 |
1068 |
unless $inDataSection |
|
179
|
4 |
1064 |
if /^<
|
|
180
|
4 |
1060 |
if /^>>GC/ |
|
181
|
328 |
736 |
if /^>/ or /^--/ |
|
191
|
0 |
4 |
unless $table =~ /^ *id\s+$id\s*,/m |
|
214
|
0 |
4 |
unless length $b1 == 64 |
|
216
|
0 |
4 |
unless length $b1 == length $b2 and length $b1 == length $b3 and length $b1 == length $AAs and length $b1 == length $starts |
|
234
|
12 |
244 |
if $self->_is_stop_aa($AA) |
|
235
|
12 |
244 |
unless $start eq '-' |
|
295
|
4 |
0 |
if $validGCIds{$id} |
|
304
|
36 |
732 |
if $AA eq $STOPAA |
|
324
|
0 |
0 |
unless $codon =~ /^[ATCGU]{3}$/ |
|
327
|
0 |
0 |
unless exists $codons->{$codon} |
|
346
|
0 |
0 |
unless my $codonToAA = $self->{'_codon_to_aa'} |
|
362
|
0 |
0 |
wantarray ? : |
|
383
|
27 |
1 |
wantarray ? : |
|
401
|
0 |
8 |
unless my $codonToAA = $self->{'_codon_to_aa'} |
|
406
|
24 |
488 |
if $self->_is_stop_aa($v) |
|
411
|
8 |
0 |
wantarray ? : |
|
428
|
0 |
0 |
unless exists $self->{'_start_codons'} |
|
430
|
0 |
0 |
wantarray ? : |
|
446
|
0 |
0 |
wantarray ? : |
|
464
|
0 |
160 |
if length $AA > 1 |
|
470
|
160 |
0 |
wantarray ? : |
|
516
|
0 |
0 |
unless $self->is_valid_codon($codon) |
|
518
|
0 |
0 |
exists $codonToAA->{$codon} ? : |
|
541
|
6 |
122 |
if $stopCodons->{$codon} |
|
583
|
51 |
2 |
if exists $self->{'_codon_deg'} |
|
591
|
6 |
122 |
if $self->is_stop_codon($codon) |