| line |
true |
false |
branch |
|
21
|
4 |
0 |
if ($@) { } |
|
113
|
1 |
3 |
unless $tag eq 'codon_table' |
|
114
|
0 |
3 |
if (ref $val) { } |
|
|
3 |
0 |
elsif ($val =~ /^\d+$/) { } |
|
116
|
0 |
0 |
unless $val->isa($codonPkg) |
|
121
|
0 |
3 |
unless $codonTable = $codonPkg->new(-'id', $val) |
|
125
|
0 |
0 |
unless $codonTable = $codonPkg->new(-'map_file', $val) |
|
130
|
0 |
3 |
unless $codonTable |
|
150
|
0 |
249 |
unless my $table = $_[0]{'_codon_table'} |
|
165
|
1 |
0 |
wantarray ? : |
|
188
|
5 |
52 |
unless ($ref) |
|
191
|
0 |
5 |
if ($input =~ /^[ATGCUN]+$/ and not -f $input) { } |
|
200
|
0 |
52 |
if ($ref eq 'HASH') { } |
|
231
|
0 |
6 |
unless my $seqIO = $self->_get_seq_io($input) |
|
234
|
0 |
6 |
if ($each) { } |
|
255
|
0 |
6 |
unless keys %list |
|
273
|
0 |
0 |
unless my $codonList = $self->tabulate_codons($input) |
|
276
|
0 |
0 |
if ($each) { } |
|
282
|
0 |
0 |
unless my $AA = $self->_codon_to_aa($codon) |
|
290
|
0 |
0 |
unless my $AA = $self->_codon_to_aa($codon) |
|
303
|
0 |
6 |
unless $input |
|
322
|
0 |
2 |
unless my $codonTable = $self->codon_table |
|
337
|
0 |
8 |
unless my $codonTable = $self->codon_table |
|
354
|
0 |
160 |
unless my $codonTable = $self->codon_table |
|
385
|
0 |
52 |
unless my $codonTable = $_[0]->codon_table |
|
404
|
0 |
26 |
unless my $degHash = $self->aa_degeneracy_classes |
|
405
|
0 |
26 |
unless my $aaClass = $$degHash{$deg} |
|
411
|
26 |
0 |
wantarray ? : |
|
424
|
0 |
0 |
unless my $codonTable = $self->codon_table |
|
425
|
0 |
0 |
unless $codonTable->is_valid_codon($codon) |
|
426
|
0 |
0 |
if $codonTable->is_stop_codon($codon) |
|
435
|
0 |
0 |
unless my $codonTable = $self->codon_table |
|
444
|
0 |
0 |
unless my $codonTable = $self->codon_table |
|
458
|
0 |
130 |
unless $seqLen % 3 == 0 |
|
468
|
0 |
130 |
unless $accuLen |
|
477
|
52 |
78 |
ref $seq ? : |
|
483
|
130 |
0 |
if ($len > 0) { } |