| line |
true |
false |
branch |
|
67
|
0 |
1 |
$self->get_tag('anti_wobble_pair') ? : |
|
69
|
1 |
0 |
if ($self->_a_to_i) |
|
163
|
0 |
1 |
ref $caller ? : |
|
167
|
0 |
1 |
if (exists $$hashRef{'a_to_i'}) { } |
|
174
|
0 |
1 |
if (exists $$hashRef{'no_atg'}) { } |
|
181
|
0 |
1 |
if (exists $$hashRef{'wobble'}) |
|
266
|
0 |
5 |
unless $pseudoCnt and $pseudoCnt > 0 |
|
267
|
0 |
5 |
unless $minTotal and $minTotal > 0 |
|
268
|
0 |
5 |
unless my $codonList = $self->get_codon_list($input) |
|
280
|
0 |
305 |
unless $$codonList{$_} |
|
284
|
0 |
100 |
if ($cntSum < $minTotal) { } |
|
302
|
0 |
5 |
if $output |
|
362
|
0 |
2 |
unless defined $minTotal |
|
374
|
4 |
36 |
unless $#codons > 0 |
|
378
|
18 |
18 |
if ($norm and $norm =~ /mean/i) { } |
|
388
|
37 |
22 |
if $maxRSCU < $rscu |
|
390
|
18 |
0 |
$maxRSCU > 0 ? : |
|
398
|
5 |
113 |
if $cai{$_} > $maxCAI |
|
408
|
1 |
1 |
if $norm and $norm =~ /mean/i and $maxCAI |
|
411
|
1 |
1 |
if $output |
|
467
|
0 |
1 |
unless defined $minTotal |
|
488
|
2 |
18 |
unless $#codons > 0 |
|
495
|
18 |
41 |
if $maxRSCU < $rscu |
|
506
|
0 |
1 |
if $output |
|
577
|
0 |
45 |
if (/^>SC/) |
|
579
|
0 |
0 |
if $SC |
|
586
|
0 |
45 |
$metSC ? : |
|
589
|
0 |
1 |
if %scHash |
|
590
|
1 |
0 |
unless ($SC) |
|
592
|
0 |
1 |
if $self->debug |
|
607
|
1 |
60 |
if $excludeATG and $codon eq 'ATG' |
|
610
|
0 |
60 |
unless $#$antiCodons > 0 |
|
618
|
86 |
80 |
unless exists $antiCodonCopyNum{$anti} |
|
622
|
0 |
80 |
unless exists $$SC{$wobble} |
|
627
|
6 |
54 |
if $W > $maxW |
|
629
|
60 |
0 |
if ($W > 0) |
|
634
|
0 |
60 |
if $self->debug |
|
644
|
60 |
0 |
$w > 0 ? : |
|
648
|
0 |
1 |
if ($kingdom) |
|
653
|
1 |
0 |
if $output |