| line |
true |
false |
branch |
|
33
|
0 |
2 |
unless ($arg{'report'}) |
|
34
|
0 |
2 |
unless (-f $arg{'report'}) |
|
35
|
0 |
2 |
unless (-T $arg{'report'}) |
|
38
|
0 |
2 |
unless ($arg{'index'}) |
|
50
|
2 |
0 |
if (-f $$self{'_index'}) { } |
|
75
|
0 |
1 |
unless (defined $arg{'ignore'}) |
|
81
|
40 |
1 |
unless ($$class{'_id'}{$id}{'_name'} eq 'END-OF-FILE') |
|
82
|
0 |
40 |
if (not $arg{'ignore'} eq 'yes') { } |
|
86
|
40 |
0 |
if ($$class{'_id'}{$id}{'_alignments'} eq 'TRUE') { } |
|
95
|
0 |
1 |
if (@queries < 1) |
|
116
|
0 |
1 |
if (not defined $arg{'query'} or $arg{'query'} eq '') |
|
117
|
0 |
1 |
unless (defined $$class{'_queries'}{'_name'}{$arg{'query'}}) |
|
122
|
0 |
1 |
unless $REPORT->open("$$class{'_report'}") |
|
129
|
1 |
1023 |
if ($_ =~ /EXIT CODE (\d+)/) |
|
130
|
1 |
1023 |
if $_ =~ /^BLAST/ |
|
136
|
0 |
1 |
if ($string eq '') |
|
137
|
0 |
1 |
if ($pass ne 'true') |
|
159
|
0 |
0 |
unless $REPORT->open("$$class{'_report'}") |
|
161
|
0 |
0 |
if (/^(BLAST\S+)\s+/) { } |
|
|
0 |
0 |
elsif (/^Query\=\s+(\S+)/) { } |
|
|
0 |
0 |
elsif (/\s*.+NONE.+\s*/) { } |
|
|
0 |
0 |
elsif ($REPORT->eof) { } |
|
187
|
0 |
0 |
if (not defined $$class{'_id'}{$report}{'_name'} && defined $$class{'_id'}{$report}{'_start'}) { } |
|
223
|
0 |
0 |
unless $OUT->open(">$$class{'_index'}") |
|
250
|
0 |
2 |
unless $IN->open("$$class{'_index'}") |
|
264
|
0 |
2 |
if ($$class{'_id'}{'1'}{'_start'} != 0) |
|
266
|
0 |
82 |
if (not defined $$class{'_id'}{$report}{'_name'} && defined $$class{'_id'}{$report}{'_start'} && defined $$class{'_id'}{$report}{'_type'}) { } |
|
300
|
0 |
1 |
unless ($arg{'report'}) |
|
303
|
1 |
0 |
if (defined $$class{'_queries'}{'_name'}{$arg{'report'}}{'_type'}) { } |