| line |
true |
false |
branch |
|
72
|
0 |
20 |
if ($self->seqid_weight eq 'file' and not defined $self->weight_file)
|
|
78
|
0 |
20 |
if ($self->count_loops_by eq 'coverage' and not defined $self->coverage) { }
|
|
|
0 |
40 |
elsif ($self->count_loops_by eq 'number_of_reads' and not defined $self->number_of_reads) { }
|
|
87
|
20 |
0 |
if $self->seqid_weight ne 'same'
|
|
132
|
0 |
20 |
unless %$indexed_fasta
|
|
142
|
0 |
50 |
if ($index_size < $read_size)
|
|
148
|
0 |
50 |
if ($index_size < $fragment_mean)
|
|
158
|
0 |
20 |
if defined $err
|
|
187
|
0 |
0 |
unless %$indexed_file
|
|
193
|
0 |
0 |
unless (exists $indexed_fasta->{$id})
|
|
197
|
0 |
0 |
if defined $err
|
|
278
|
3 |
5 |
$class eq 'App::SimulateReads::Fastq::PairedEnd' ? :
|
|
282
|
0 |
8 |
if ($number_of_reads <= 0 or $class eq 'App::SimulateReads::Fastq::PairedEnd' and $number_of_reads == 1)
|
|
351
|
0 |
8 |
$number_of_jobs == 1 ? :
|
|
360
|
10 |
4 |
if my $pid = $pm->start(\@files_t)
|
|
379
|
2 |
2 |
if $tid == $number_of_jobs
|
|
398
|
1710 |
0 |
unless (@_)
|
|
400
|
0 |
2280 |
unless $fhs[$fh_idx]->say(${$fastq_entry[$fh_idx];})
|
|
410
|
0 |
6 |
unless $fhs[$fh_idx]->close
|
|
424
|
0 |
4 |
if ($sig->signal_catched)
|
|
432
|
0 |
5 |
$self->output_gzip ? :
|
|
435
|
0 |
10 |
unless &cat($tmp_files[$i], $fh[$fh_idx])
|
|
442
|
0 |
5 |
unless $fh[$fh_idx]->close
|
|
449
|
0 |
10 |
unless unlink $file_t
|