| blib/lib/App/Fasops/Common.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 21 | 37 | 56.7 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 165 | 2 | 0 | 1 | defined $length_of and ref $length_of eq 'HASH' |
| 690 | 22 | 63 | 4858 | $base0 =~ /[atcg]/iu and $base1 =~ /[atcg]/iu |
| 729 | 0 | 0 | 8 | $base0 =~ /[atcg]/iu and $base1 =~ /[atcg]/iu |
| 0 | 1 | 7 | $base0 =~ /[atcg]/iu and $base1 =~ /[atcg]/iu and $base_og =~ /[atcg]/iu | |
| 1077 | 3 | 1 | 0 | not $indel_outgroup_seq =~ /\-/u and $indel_seq ne $indel_outgroup_seq |
| 1258 | 34 | 13 | 23 | $ichar eq '1' and $schar eq '1' |
| line | l | !l | condition |
|---|---|---|---|
| 298 | 0 | 0 | shift() // 'mafft' |
| 1153 | 8 | 0 | shift() || 1 |
| 1154 | 8 | 0 | shift() || '+' |
| 1179 | 734 | 0 | shift() || 1 |
| 1180 | 734 | 0 | shift() || '+' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 93 | 376 | 0 | 173 | $want_full or not defined $info_ref->{'name'} |
| 619 | 0 | 0 | 8 | $line eq '' or substr($line, 0, 1) eq ' ' |
| 1158 | 0 | 0 | 8 | $pos < $chr_start or $pos > $chr_end |