| line |
true |
false |
branch |
|
44
|
2 |
2 |
if (@{$args;} != 2) |
|
51
|
0 |
3 |
if lc $_ eq 'stdin' |
|
52
|
1 |
2 |
unless (Path::Tiny::path($_)->is_file) |
|
57
|
0 |
1 |
if (not exists $opt->{'outfile'}) |
|
67
|
0 |
1 |
if (lc $args->[0] eq 'stdin') { } |
|
75
|
1 |
0 |
if (lc $opt->{'outfile'} eq 'stdout') { } |
|
88
|
1 |
7 |
if $in_fh->eof and $content eq '' |
|
90
|
6 |
1 |
unless ($in_fh->eof) |
|
93
|
1 |
6 |
if ($line eq '' || $line =~ /^\s+$/ and $content ne '') { } |
|
98
|
0 |
1 |
unless (defined $opt->{'name'}) |
|
112
|
0 |
1 |
unless exists $set_single->{$chr_name} |
|
113
|
0 |
1 |
if $set_single->{$chr_name}->is_empty |
|
123
|
0 |
1 |
if $i_chr_intspan->is_empty |
|
162
|
0 |
1 |
if $ss_start >= $ss_end |
|
168
|
0 |
1 |
if ($indel_intspan->contains($ss_start)) |
|
172
|
0 |
1 |
if ($indel_intspan->contains($ss_end)) |
|
176
|
0 |
1 |
if $ss_intspan->size <= $opt->{'length'} |