| blib/lib/App/Fasops/Command/maf2fas.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| branch | 18 | 22 | 81.8 |
| line | true | false | branch |
|---|---|---|---|
| 42 | 1 | 3 | unless (@{$args;}) |
| 49 | 0 | 3 | if lc $_ eq 'stdin' |
| 50 | 1 | 2 | unless (Path::Tiny::path($_)->is_file) |
| 55 | 0 | 2 | if (not exists $opt->{'outfile'}) |
| 64 | 2 | 0 | if (lc $opt->{'outfile'} eq 'stdout') { } |
| 73 | 0 | 2 | if (lc $infile eq 'stdin') { } |
| 82 | 2 | 30 | if $in_fh->eof and $content eq '' |
| 84 | 28 | 2 | unless ($in_fh->eof) |
| 88 | 4 | 26 | if ($line eq '' || $line =~ /^\s+$/ and $content ne '') { } |
| 16 | 10 | elsif (substr($line, 0, 2) eq 's ') { } | |
| 93 | 1 | 3 | if length $$info_of{$names[0]}{'seq'} < $opt->{'length'} |