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package Tree::STR;
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1
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174575
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use 5.010;
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1
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4
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4
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1
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1
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7
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use strict;
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2
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1
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68
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5
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1
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1
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6
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use warnings;
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1
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2
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1
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54
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6
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7
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1
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1
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584
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use Tree::STR::Node;
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1
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8
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1
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81
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8
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9
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1
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1
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663
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use POSIX qw /ceil/;
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1
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8822
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1
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6
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1
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1
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2058
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use List::Util qw /min max/;
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2
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1
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113
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11
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1
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1
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714
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use Ref::Util qw/is_blessed_ref is_arrayref/;
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1
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3413
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1
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1859
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14
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=head1 NAME
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15
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16
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Tree::STR - A Sort-Tile-Recursive tree index
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17
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18
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=head1 VERSION
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19
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20
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Version 0.02
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21
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22
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=cut
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23
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24
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our $VERSION = '0.06';
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25
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26
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27
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=head1 SYNOPSIS
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28
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29
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use Tree::STR;
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30
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31
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my $data = [[0,1,2,2,'item 1'], [10,20,100,200,'item 2']];
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32
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my $tree = Tree::STR->new($data);
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33
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my $intersects_point = $tree->query_point(50,50); # ['item 2']
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34
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my $intersects_poly = $tree->query_partly_within_rect(20,20,200,200); # ['item 2']
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35
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36
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# Or if you need the Tree:R interface you can pass an array ref after
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37
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# the bounding coords. It will be populated with the results.
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38
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my $intersects_poly = [];
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39
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$tree->query_partly_within_rect(20,20,200,200, $intersects_poly); # ['item 2']
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40
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...
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41
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42
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=head1 DESCRIPTION
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43
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44
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Create a Sort-Tile-Recursive tree. This is a read-only R-Tree that
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45
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is more efficient to create than a standard R-Tree.
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46
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47
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The input data need to be an array of arrays, where each internal
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48
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array contains the bounding box coordinates as (xmin, ymin, xmax, ymax)
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49
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followed by the item to be stored.
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50
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51
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Alternately one can pass an array of objects that provide a bbox method
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52
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that returns an array of coordinates in the order (xmin, ymin, xmax, ymax).
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53
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54
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=head1 EXPORT
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55
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56
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None.
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57
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58
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=head1 METHODS
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59
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60
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=head2 new
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61
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62
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=cut
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63
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64
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sub new {
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65
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3
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3
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1
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275218
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my ($class, $data, $n) = @_;
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66
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3
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50
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25
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my $self = bless { nrects => $n // 3}, $class;
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67
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3
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11
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$self->{root} = $self->_load_data ($data);
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68
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3
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11
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return $self;
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69
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}
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70
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71
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sub bbox {
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72
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0
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0
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0
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0
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my ($self) = @_;
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73
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0
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0
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0
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return if !$self->{root};
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74
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0
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0
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$self->{root}->bbox;
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75
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}
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76
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77
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sub _load_data {
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78
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3
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3
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9
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my ($self, $data) = @_;
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79
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# we need to work on the bbox centres
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80
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3
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50
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33
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9
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my @bboxed = map {is_blessed_ref $_ && $_->can('bbox') ? [$_->bbox, $_] : $_} @$data;
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84
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238
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81
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3
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9
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my @centred = map {[($_->[0] + $_->[2] / 2), ($_->[1] + $_->[3] / 2), $_]} @bboxed;
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84
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244
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82
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3
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26
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my @bbox = $self->_get_bbox_from_centred_recs(\@centred);
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83
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3
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12
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my $children = $self->_load_data_inner(\@centred);
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84
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3
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15
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return Tree::STR::Node->new (
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85
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bbox => \@bbox,
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86
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children => $children,
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87
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);
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88
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}
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89
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90
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sub _load_data_inner {
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91
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42
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42
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103
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my ($self, $data, $sort_axis) = @_;
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92
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93
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42
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100
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104
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$sort_axis //= 0;
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94
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42
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142
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my @sorted = sort {$a->[$sort_axis] <=> $b->[$sort_axis]} @$data;
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599
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1131
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95
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96
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42
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84
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my $nrects = $self->{nrects};
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97
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42
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67
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my $nitems = @$data;
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98
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42
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136
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my $n_per_box = ceil ($nitems / $nrects);
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99
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42
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70
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my @ranges;
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100
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42
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67
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my $i = 0;
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101
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42
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92
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while ($i < $nitems) {
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102
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123
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354
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push @ranges, [$i,$i+$n_per_box-1];
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103
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123
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257
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$i += $n_per_box;
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104
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}
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105
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106
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# switch axis for inner calls
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107
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42
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100
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89
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$sort_axis = $sort_axis ? 0 : 1;
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108
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109
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42
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61
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my @nodes;
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110
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42
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74
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for my $range (@ranges) {
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111
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123
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460
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my @recs = @sorted[$range->[0]..min($#sorted, $range->[1])];
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112
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113
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123
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50
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275
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next if !@recs;
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114
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115
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123
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258
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my @bbox = $self->_get_bbox_from_centred_recs(\@recs);
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116
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123
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100
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260
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if (@recs > 1) {
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117
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39
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108
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push @nodes, Tree::STR::Node->new (
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118
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bbox => \@bbox,
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119
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children => $self->_load_data_inner(\@recs, $sort_axis),
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120
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);
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121
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}
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122
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else {
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123
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84
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247
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push @nodes, Tree::STR::Node->new (
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124
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bbox => \@bbox,
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125
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tip => $recs[0][2][-1], # nasty...
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126
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);
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127
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}
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128
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}
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129
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42
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184
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return \@nodes;
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130
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}
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131
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132
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sub _get_bbox_from_centred_recs {
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133
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126
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126
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225
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my ($self, $recs) = @_;
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134
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126
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203
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state $bbox_idx = 2;
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135
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126
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194
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my ($x1, $y1, $x2, $y2) = @{$recs->[0][$bbox_idx]}[0 .. 3];
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126
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365
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136
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126
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100
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527
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return ($x1, $y1, $x2, $y2)
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137
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if @$recs == 1;
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138
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42
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94
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foreach my $rec (@$recs) {
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139
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324
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532
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my $bbox = $rec->[$bbox_idx];
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140
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324
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606
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$x1 = min($x1, $bbox->[0]);
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141
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324
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575
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$y1 = min($y1, $bbox->[1]);
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142
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324
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624
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$x2 = max($x2, $bbox->[2]);
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143
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324
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678
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$y2 = max($y2, $bbox->[3]);
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144
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}
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145
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42
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144
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return $x1, $y1, $x2, $y2;
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146
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}
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147
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148
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=head2 query_point
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149
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150
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=cut
|
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151
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152
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sub query_point {
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153
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5
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5
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1
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16777
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my ($self, $x, $y, $aref) = @_;
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154
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155
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5
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8
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my @tips;
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156
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5
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13
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my @children = ($self->{root});
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157
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CHILD:
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158
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5
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21
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while (my $child = shift @children ) {
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159
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42
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92
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my $bbox = $child->bbox;
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160
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next CHILD
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161
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42
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100
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100
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275
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if $x < $bbox->[0] || $x > $bbox->[2] || $y < $bbox->[1] || $y > $bbox->[3];
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100
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100
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162
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163
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17
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100
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38
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if ($child->is_tip_node) {
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164
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push @tips, $child->{tip}
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165
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4
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16
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}
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166
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else {
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167
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# add to search stack
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168
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13
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39
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push @children, @{$child->children};
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13
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29
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169
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}
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170
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}
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171
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172
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5
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100
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25
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return \@tips if !$aref;
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173
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174
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# Tree::R compat
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175
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1
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4
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push @$aref, @tips;
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176
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1
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4
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return;
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177
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}
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178
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179
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=head2 query_partly_within_rect
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180
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181
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=cut
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182
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183
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# non-recursive algorithm
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184
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sub query_partly_within_rect {
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185
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4
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4
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1
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2306
|
my ($self, $x1, $y1, $x2, $y2, $aref) = @_;
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186
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187
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4
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8
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my @tips;
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188
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4
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11
|
my @children = ($self->{root});
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189
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|
CHILD:
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190
|
4
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17
|
while (my $child = shift @children ) {
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191
|
53
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107
|
my $bbox = $child->bbox;
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192
|
|
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|
# no overlap
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193
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next CHILD
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194
|
53
|
100
|
100
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321
|
if $x2 < $bbox->[0] || $x1 > $bbox->[2]
|
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100
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100
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195
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|| $y2 < $bbox->[1] || $y1 > $bbox->[3];
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196
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197
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29
|
100
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100
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65
|
if ($child->is_tip_node) {
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50
|
66
|
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33
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198
|
|
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|
push @tips, $child->{tip}
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199
|
12
|
|
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|
50
|
}
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200
|
|
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|
|
elsif ( $x1 < $bbox->[0] && $x2 > $bbox->[2]
|
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201
|
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|
&& $y1 < $bbox->[1] && $y2 > $bbox->[3]) {
|
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202
|
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|
|
# bbox completely within search box, grab all tips
|
|
203
|
0
|
|
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|
|
0
|
push @tips, @{$child->tips};
|
|
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0
|
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|
0
|
|
|
204
|
|
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|
}
|
|
205
|
|
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|
else {
|
|
206
|
|
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|
|
|
# add to search stack
|
|
207
|
17
|
|
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|
27
|
push @children, @{$child->children};
|
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17
|
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|
37
|
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|
208
|
|
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|
|
}
|
|
209
|
|
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|
|
}
|
|
210
|
|
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|
|
|
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|
|
211
|
4
|
100
|
|
|
|
19
|
return \@tips if !$aref;
|
|
212
|
|
|
|
|
|
|
|
|
213
|
|
|
|
|
|
|
# Tree::R compat
|
|
214
|
1
|
|
|
|
|
4
|
push @$aref, @tips;
|
|
215
|
1
|
|
|
|
|
6
|
return;
|
|
216
|
|
|
|
|
|
|
}
|
|
217
|
|
|
|
|
|
|
|
|
218
|
|
|
|
|
|
|
=head2 query_completely_within_rect
|
|
219
|
|
|
|
|
|
|
|
|
220
|
|
|
|
|
|
|
=cut
|
|
221
|
|
|
|
|
|
|
|
|
222
|
|
|
|
|
|
|
sub query_completely_within_rect {
|
|
223
|
4
|
|
|
4
|
1
|
5602
|
my ($self, $x1, $y1, $x2, $y2, $aref) = @_;
|
|
224
|
|
|
|
|
|
|
|
|
225
|
4
|
|
|
|
|
38
|
my @tips;
|
|
226
|
4
|
|
|
|
|
13
|
my @children = ($self->{root});
|
|
227
|
|
|
|
|
|
|
|
|
228
|
|
|
|
|
|
|
CHILD:
|
|
229
|
4
|
|
|
|
|
17
|
while (my $child = shift @children ) {
|
|
230
|
110
|
|
|
|
|
299
|
my $bbox = $child->bbox;
|
|
231
|
|
|
|
|
|
|
|
|
232
|
|
|
|
|
|
|
# next if no overlap
|
|
233
|
|
|
|
|
|
|
next CHILD
|
|
234
|
110
|
100
|
66
|
|
|
673
|
if $x2 < $bbox->[0] || $x1 > $bbox->[2]
|
|
|
|
|
100
|
|
|
|
|
|
|
|
|
66
|
|
|
|
|
|
235
|
|
|
|
|
|
|
|| $y2 < $bbox->[1] || $y1 > $bbox->[3];
|
|
236
|
|
|
|
|
|
|
|
|
237
|
|
|
|
|
|
|
# user box contains bbox, get all the subtending tips
|
|
238
|
74
|
100
|
66
|
|
|
344
|
if ( $x1 < $bbox->[0] && $x2 > $bbox->[2]
|
|
|
|
|
100
|
|
|
|
|
|
|
|
|
100
|
|
|
|
|
|
239
|
|
|
|
|
|
|
&& $y1 < $bbox->[1] && $y2 > $bbox->[3]) {
|
|
240
|
16
|
|
|
|
|
53
|
push @tips, @{$child->tips};
|
|
|
16
|
|
|
|
|
38
|
|
|
241
|
|
|
|
|
|
|
}
|
|
242
|
|
|
|
|
|
|
else {
|
|
243
|
|
|
|
|
|
|
# add to search stack
|
|
244
|
58
|
|
|
|
|
81
|
push @children, @{$child->children};
|
|
|
58
|
|
|
|
|
118
|
|
|
245
|
|
|
|
|
|
|
}
|
|
246
|
|
|
|
|
|
|
|
|
247
|
|
|
|
|
|
|
}
|
|
248
|
|
|
|
|
|
|
|
|
249
|
4
|
100
|
|
|
|
20
|
return \@tips if !$aref;
|
|
250
|
|
|
|
|
|
|
|
|
251
|
|
|
|
|
|
|
# Tree::R compat
|
|
252
|
1
|
|
|
|
|
3
|
push @$aref, @tips;
|
|
253
|
1
|
|
|
|
|
5
|
return;
|
|
254
|
|
|
|
|
|
|
}
|
|
255
|
|
|
|
|
|
|
|
|
256
|
|
|
|
|
|
|
=head1 AUTHOR
|
|
257
|
|
|
|
|
|
|
|
|
258
|
|
|
|
|
|
|
Shawn Laffan
|
|
259
|
|
|
|
|
|
|
|
|
260
|
|
|
|
|
|
|
=head1 BUGS
|
|
261
|
|
|
|
|
|
|
|
|
262
|
|
|
|
|
|
|
L
|
|
263
|
|
|
|
|
|
|
|
|
264
|
|
|
|
|
|
|
|
|
265
|
|
|
|
|
|
|
=head1 SEE ALSO
|
|
266
|
|
|
|
|
|
|
|
|
267
|
|
|
|
|
|
|
L
|
|
268
|
|
|
|
|
|
|
|
|
269
|
|
|
|
|
|
|
L
|
|
270
|
|
|
|
|
|
|
|
|
271
|
|
|
|
|
|
|
Leutenegger, Scott T.; Edgington, Jeffrey M.; Lopez, Mario A. (1997).
|
|
272
|
|
|
|
|
|
|
"STR: A Simple and Efficient Algorithm for R-Tree Packing".
|
|
273
|
|
|
|
|
|
|
L
|
|
274
|
|
|
|
|
|
|
|
|
275
|
|
|
|
|
|
|
|
|
276
|
|
|
|
|
|
|
=head1 LICENSE AND COPYRIGHT
|
|
277
|
|
|
|
|
|
|
|
|
278
|
|
|
|
|
|
|
This software is Copyright (c) 2026 by Shawn Laffan .
|
|
279
|
|
|
|
|
|
|
|
|
280
|
|
|
|
|
|
|
This is free software, licensed under:
|
|
281
|
|
|
|
|
|
|
|
|
282
|
|
|
|
|
|
|
The Artistic License 2.0 (GPL Compatible)
|
|
283
|
|
|
|
|
|
|
|
|
284
|
|
|
|
|
|
|
|
|
285
|
|
|
|
|
|
|
=cut
|
|
286
|
|
|
|
|
|
|
|
|
287
|
|
|
|
|
|
|
1; # End of Tree::STR
|