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stmt |
bran |
cond |
sub |
pod |
time |
code |
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24027
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use strict; |
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1
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3
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1
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40
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2
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1
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1
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5
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use warnings; |
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1
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2
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1
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57
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3
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package SeeAlso::DBI; |
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4
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{ |
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5
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$SeeAlso::DBI::VERSION = '0.71'; |
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6
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} |
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7
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#ABSTRACT: Store L objects in database. |
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8
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9
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1
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1
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6886
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use DBI; |
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1
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29456
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1
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71
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10
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1
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1
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989
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use DBI::Const::GetInfoType; |
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1
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7555
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1
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168
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11
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1
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1
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10
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use Carp qw(croak); |
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1
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1
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1
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51
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12
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13
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1
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1
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5
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use base qw( SeeAlso::Source ); |
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1
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1
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1
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603
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14
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1
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1
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7
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use SeeAlso::Source qw(expand_from_config); |
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1
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2
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1
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1942
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15
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16
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## no critic |
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17
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18
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19
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sub new { |
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20
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0
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0
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1
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my ($class, %attr) = @_; |
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21
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0
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expand_from_config( \%attr, 'DBI' ); |
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22
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23
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0
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0
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if ( $attr{dbi} ) { |
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24
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0
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0
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$attr{dbi} = 'dbi:' . $attr{dbi} unless $attr{dbi} =~ /^dbi:/i; |
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25
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0
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0
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$attr{user} = "" unless defined $attr{user}; |
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26
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0
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0
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$attr{password} = "" unless defined $attr{password}; |
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27
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0
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$attr{dbh} = DBI->connect( $attr{dbi}, $attr{user}, $attr{password} ); |
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28
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} |
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29
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30
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0
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0
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croak('Parameter dbh or dbi required') |
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31
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unless UNIVERSAL::isa( $attr{dbh}, 'DBI::db' ); |
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32
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0
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0
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0
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croak('Parameter dbh_ro must be a DBI object') |
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33
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if defined $attr{dbh_ro} and not UNIVERSAL::isa( $attr{dbh_ro}, 'DBI::db' ); |
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34
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35
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0
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my $self = bless { }, $class; |
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36
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37
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0
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0
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$self->description( %attr ) if %attr; |
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38
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39
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0
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$self->{dbh} = $attr{dbh}; |
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40
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0
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$self->{dbh_ro} = $attr{dbh_ro}; |
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41
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0
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0
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$self->{table} = defined $attr{table} ? $attr{table} : 'seealso'; |
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42
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0
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0
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$self->{key} = $attr{key} || 'hash'; |
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43
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44
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0
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0
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$self->{idtype} = $attr{idtype} || 'SeeAlso::Identifier'; |
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45
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0
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eval "require " . $self->{idtype}; |
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46
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0
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0
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croak $@ if $@; |
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47
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0
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0
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croak($self->{idtype} . ' is not a SeeAlso::Identifier') |
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48
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unless UNIVERSAL::isa( $self->{idtype}, 'SeeAlso::Identifier' ); |
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49
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50
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# build SQL strings |
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51
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0
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my $table = $self->{dbh}->quote_identifier( $self->{table} ); |
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52
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0
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my $key = $self->{dbh}->quote_identifier('key'); |
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53
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0
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my $label = $self->{dbh}->quote_identifier('label'); |
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54
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0
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my $descr = $self->{dbh}->quote_identifier('description'); |
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55
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0
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my $uri = $self->{dbh}->quote_identifier('uri'); |
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56
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0
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my $db_name = $self->{dbh}->get_info( $GetInfoType{SQL_DBMS_NAME} ); |
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57
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58
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0
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my @values_st; |
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59
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0
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my @create_st = ("$key VARCHAR(255)"); |
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60
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61
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0
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0
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if (defined $attr{label}) { |
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62
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0
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$self->{label} = $attr{label}; |
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63
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} else { |
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64
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0
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push @values_st, $label; |
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65
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0
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push @create_st, "$label TEXT" |
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66
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} |
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67
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0
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0
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if (defined $attr{description}) { |
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68
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0
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$self->{descr} = $attr{description}; |
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69
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} else { |
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70
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0
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push @values_st, $descr; |
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71
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0
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push @create_st, "$descr TEXT", |
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72
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} |
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73
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0
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0
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if (defined $attr{uri}) { |
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74
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0
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$self->{uri} = $attr{uri}; |
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75
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} else { |
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76
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0
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push @values_st, $uri; |
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77
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0
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push @create_st, "$uri TEXT", |
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78
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} |
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79
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80
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0
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my $values = join(", ", @values_st); |
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81
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82
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0
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my %sql = ( |
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83
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'select' => "SELECT $values FROM $table WHERE $key=?", |
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84
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0
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'insert' => "INSERT INTO $table ($key,$values) VALUES (?," . join(",", map {'?'} @values_st) . ")", |
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85
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# update => "UPDATE $table SET $value = ? WHERE $key=?", |
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86
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'delete' => "DELETE FROM $table WHERE $key = ?", |
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87
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'clear' => "DELETE FROM $table", |
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88
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# get_keys => "SELECT DISTINCT $key FROM $table", |
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89
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'create' => "CREATE TABLE IF NOT EXISTS $table (" . join(", ", @create_st) . ")", |
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90
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# TODO: create index: |
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91
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# $dbh->do( 'CREATE INDEX '.$table.'_isbn_idx ON '.$table.' (isbn)' ); |
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92
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'drop' => "DROP TABLE $table" |
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93
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); |
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94
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95
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0
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foreach my $c ( qw(select insert delete clear create) ) { |
|
96
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0
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0
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$self->{$c} = $attr{$c} ? $attr{$c} : $sql{$c}; |
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97
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} |
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98
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99
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0
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0
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$self->create if $attr{build}; |
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100
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101
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0
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return $self; |
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102
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} |
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103
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104
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105
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sub query_callback { |
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106
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0
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0
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1
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my ($self, $identifier) = @_; |
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107
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108
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0
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my $key = $self->key($identifier); |
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109
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110
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0
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0
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my $dbh = $self->{dbh_ro} ? $self->{dbh_ro} : $self->{dbh}; |
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111
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0
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0
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my $sth = $dbh->prepare_cached( $self->{'select'} ) |
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112
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or croak $dbh->errstr; |
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113
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0
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0
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$sth->execute($key) or croak $sth->errstr; |
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114
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0
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my $result = $sth->fetchall_arrayref; |
|
115
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116
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0
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my $response = SeeAlso::Response->new( $identifier ); |
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117
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118
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0
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foreach my $row ( @{$result} ) { |
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0
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119
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0
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my ($label, $description, $uri) = $self->enriched_row( $key, @{$row} ); |
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0
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120
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0
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$response->add( $label, $description, $uri ); |
|
121
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} |
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122
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123
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0
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return $response; |
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124
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} |
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125
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126
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127
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sub key { |
|
128
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0
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0
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1
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my ($self, $identifier) = @_; |
|
129
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130
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0
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0
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if ( not UNIVERSAL::isa( $identifier, $self->{idtype} ) ) { |
|
131
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0
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my $class = $self->{idtype}; |
|
132
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0
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$identifier = eval "new $class(\$identifier)"; # TODO: what if this fails? |
|
133
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} |
|
134
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135
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0
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0
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if ($self->{key} eq 'hash') { |
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0
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0
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0
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136
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0
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return $identifier->hash; |
|
137
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} elsif ($self->{key} eq 'value') { |
|
138
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0
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return $identifier->value; |
|
139
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} elsif ($self->{key} eq 'canonical') { |
|
140
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0
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return $identifier->canonical; |
|
141
|
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} elsif (ref($self->{key}) eq 'CODE') { |
|
142
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0
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|
my $code = $self->{key}; |
|
143
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0
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|
return $code( $identifier ); |
|
144
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} |
|
145
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146
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0
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|
return $identifier->hash; |
|
147
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} |
|
148
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149
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150
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sub create { |
|
151
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0
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0
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1
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|
my ($self) = @_; |
|
152
|
0
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0
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|
|
$self->{dbh}->do( $self->{'create'} ) or croak $self->{dbh}->errstr; |
|
153
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0
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|
return; |
|
154
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} |
|
155
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156
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157
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sub clear { |
|
158
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0
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0
|
1
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|
my ($self) = @_; |
|
159
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0
|
0
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|
|
$self->{dbh}->do( $self->{'clear'} ) or croak $self->{dbh}->errstr; |
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160
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0
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|
return; |
|
161
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} |
|
162
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163
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164
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sub drop { |
|
165
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0
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|
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0
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1
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|
my ($self) = @_; |
|
166
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0
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0
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|
|
$self->{dbh}->do( $self->{'drop'} ) or croak $self->{dbh}->errstr; |
|
167
|
0
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|
return; |
|
168
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} |
|
169
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170
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171
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sub delete { |
|
172
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0
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|
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0
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1
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|
my ($self, $identifier) = @_; |
|
173
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0
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0
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|
|
$self->{dbh}->do( $self->{'delete'}, undef, $self->key($identifier) ) |
|
174
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|
or croak $self->{dbh}->errstr; |
|
175
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} |
|
176
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|
177
|
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|
178
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|
sub update { |
|
179
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0
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|
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0
|
1
|
|
my ($self, $response) = @_; |
|
180
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0
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|
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|
|
$self->delete( $response->identifier ); |
|
181
|
0
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|
$self->insert( $response ); |
|
182
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|
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|
} |
|
183
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184
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|
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185
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sub insert { |
|
186
|
0
|
|
|
0
|
1
|
|
my ($self, $response) = @_; |
|
187
|
|
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|
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|
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|
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188
|
0
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0
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|
croak('SeeAlso::Response object required') unless |
|
189
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|
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|
|
UNIVERSAL::isa( $response, 'SeeAlso::Response' ); |
|
190
|
|
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191
|
0
|
0
|
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|
return 0 unless $response->size; |
|
192
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|
193
|
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|
|
# type hash/canonical/value |
|
194
|
0
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|
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|
|
my $key = $self->key( $response->identifier ); |
|
195
|
0
|
|
|
|
|
|
my @rows; |
|
196
|
|
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|
|
|
|
|
|
197
|
0
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|
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|
|
for(my $i=0; $i<$response->size; $i++) { |
|
198
|
0
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|
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|
|
|
my ($label, $description, $uri) = $response->get($i); |
|
199
|
0
|
|
|
|
|
|
my @insert = ($key); |
|
200
|
0
|
0
|
|
|
|
|
push @insert, $label unless defined $self->{label}; |
|
201
|
0
|
0
|
|
|
|
|
push @insert, $description unless defined $self->{descr}; |
|
202
|
0
|
0
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|
|
|
|
push @insert, $uri unless defined $self->{uri}; |
|
203
|
0
|
|
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|
push @rows, \@insert; |
|
204
|
|
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|
|
} |
|
205
|
|
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|
|
206
|
0
|
|
|
0
|
|
|
return $self->bulk_insert( sub { shift @rows } ); |
|
|
0
|
|
|
|
|
|
|
|
207
|
|
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|
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|
|
} |
|
208
|
|
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|
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|
|
209
|
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|
|
|
|
210
|
|
|
|
|
|
|
sub bulk_insert { |
|
211
|
0
|
|
|
0
|
1
|
|
my ($self, $sub) = @_; |
|
212
|
|
|
|
|
|
|
|
|
213
|
0
|
0
|
|
|
|
|
croak('bulk_insert expects a code reference') unless ref($sub) eq 'CODE'; |
|
214
|
|
|
|
|
|
|
|
|
215
|
0
|
|
|
|
|
|
my $sth = $self->{dbh}->prepare_cached( $self->{insert} ); |
|
216
|
0
|
|
|
|
|
|
my $tuples = $sth->execute_for_fetch( $sub ); |
|
217
|
0
|
|
|
|
|
|
$sth->finish; |
|
218
|
|
|
|
|
|
|
|
|
219
|
0
|
|
|
|
|
|
return $tuples; |
|
220
|
|
|
|
|
|
|
} |
|
221
|
|
|
|
|
|
|
|
|
222
|
|
|
|
|
|
|
# ($key,$label,$description,$uri,@row) => ($label,$description,$uri) |
|
223
|
|
|
|
|
|
|
sub enriched_row { |
|
224
|
0
|
|
|
0
|
1
|
|
my ($self, @row) = @_; |
|
225
|
|
|
|
|
|
|
|
|
226
|
0
|
|
|
|
|
|
my @row2 = @row; |
|
227
|
0
|
|
|
|
|
|
my $key = shift @row2; |
|
228
|
0
|
0
|
|
|
|
|
my $label = defined $self->{label} ? $self->{label} : shift @row2; |
|
229
|
0
|
0
|
|
|
|
|
my $description = defined $self->{descr} ? $self->{descr} : shift @row2; |
|
230
|
0
|
0
|
|
|
|
|
my $uri = defined $self->{uri} ? $self->{uri} : shift @row2; |
|
231
|
|
|
|
|
|
|
# code references not supported yet! |
|
232
|
|
|
|
|
|
|
|
|
233
|
1
|
|
|
1
|
|
8
|
no warnings; |
|
|
1
|
|
|
|
|
2
|
|
|
|
1
|
|
|
|
|
419
|
|
|
234
|
0
|
0
|
|
|
|
|
if ( defined $self->{label} ) { |
|
235
|
0
|
|
|
|
|
|
$label =~ s/#([0-9])/${row[$1-1]}/g; |
|
236
|
|
|
|
|
|
|
} |
|
237
|
0
|
0
|
|
|
|
|
if ( defined $self->{descr} ) { |
|
238
|
0
|
|
|
|
|
|
$description =~ s/#([0-9])/${row[$1-1]}/g; |
|
239
|
|
|
|
|
|
|
} |
|
240
|
0
|
0
|
|
|
|
|
if ( defined $self->{uri} ) { |
|
241
|
0
|
|
|
|
|
|
$uri =~ s/#([0-9])/${row[$1-1]}/g; |
|
242
|
|
|
|
|
|
|
} |
|
243
|
|
|
|
|
|
|
|
|
244
|
0
|
|
|
|
|
|
return ( $label, $description, $uri ); |
|
245
|
|
|
|
|
|
|
} |
|
246
|
|
|
|
|
|
|
|
|
247
|
|
|
|
|
|
|
|
|
248
|
|
|
|
|
|
|
|
|
249
|
|
|
|
|
|
|
sub bulk_import { |
|
250
|
0
|
|
|
0
|
1
|
|
my ($self, %param) = @_; |
|
251
|
0
|
|
|
|
|
|
my $file = $param{file}; |
|
252
|
0
|
0
|
|
|
|
|
croak 'No file specified' unless defined $file; |
|
253
|
|
|
|
|
|
|
|
|
254
|
0
|
0
|
|
|
|
|
my $label = defined $param{label} ? $param{label} : '#2'; |
|
255
|
0
|
0
|
|
|
|
|
my $description = defined $param{descr} ? $param{descr} : '#3'; |
|
256
|
0
|
0
|
|
|
|
|
my $uri = defined $param{uri} ? $param{uri} : '#4'; |
|
257
|
|
|
|
|
|
|
|
|
258
|
0
|
0
|
|
|
|
|
open FILE, $file or croak "Failed to open file $file"; |
|
259
|
0
|
|
|
|
|
|
binmode FILE, ":utf8"; |
|
260
|
|
|
|
|
|
|
|
|
261
|
|
|
|
|
|
|
$self->bulk_insert( sub { |
|
262
|
0
|
|
|
0
|
|
|
my $line = readline(*FILE); |
|
263
|
0
|
0
|
|
|
|
|
return unless $line; |
|
264
|
0
|
|
|
|
|
|
chomp($line); |
|
265
|
0
|
|
|
|
|
|
my @v = split /\t/, $line; |
|
266
|
0
|
|
|
|
|
|
my ($l,$d,$u) = ($label,$description,$uri); |
|
267
|
|
|
|
|
|
|
|
|
268
|
1
|
|
|
1
|
|
7
|
no warnings; |
|
|
1
|
|
|
|
|
2
|
|
|
|
1
|
|
|
|
|
208
|
|
|
269
|
0
|
|
|
|
|
|
$l =~ s/#([0-9])/${v[$1-1]}/g; |
|
270
|
0
|
|
|
|
|
|
$d =~ s/#([0-9])/${v[$1-1]}/g; |
|
271
|
0
|
|
|
|
|
|
$u =~ s/#([0-9])/${v[$1-1]}/g; |
|
272
|
|
|
|
|
|
|
|
|
273
|
0
|
|
|
|
|
|
return [ $v[0], $l, $d, $u ]; |
|
274
|
0
|
|
|
|
|
|
} ); |
|
275
|
|
|
|
|
|
|
|
|
276
|
0
|
|
|
|
|
|
close FILE; |
|
277
|
|
|
|
|
|
|
} |
|
278
|
|
|
|
|
|
|
|
|
279
|
|
|
|
|
|
|
1; |
|
280
|
|
|
|
|
|
|
|
|
281
|
|
|
|
|
|
|
|
|
282
|
|
|
|
|
|
|
__END__ |