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# RDF::Trine::Graph |
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# ----------------------------------------------------------------------------- |
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=head1 NAME |
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RDF::Trine::Graph - Materialized RDF Graphs for testing isomorphism |
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=head1 VERSION |
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This document describes RDF::Trine::Graph version 1.017 |
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=head1 SYNOPSIS |
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use RDF::Trine::Graph; |
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my $a = RDF::Trine::Graph->new( $model_a ); |
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my $b = RDF::Trine::Graph->new( $model_b ); |
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print "graphs are " . ($a->equals( $b ) ? "the same" : "different"); |
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=head1 DESCRIPTION |
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RDF::Trine::Graph provdes a mechanism for testing graph isomorphism based on |
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graph triples from either a RDF::Trine::Model or a RDF::Trine::Iterator. |
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Isomorphism testing requires materializing all of a graph's triples in memory, |
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and so should be used carefully in situations with large graphs. |
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=head1 METHODS |
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=over 4 |
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=cut |
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package RDF::Trine::Graph; |
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use strict; |
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149
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68
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1736
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use warnings; |
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1785
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no warnings 'redefine'; |
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68
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use Algorithm::Combinatorics qw(permutations); |
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183071
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40
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our ($VERSION, $debug, $AUTOLOAD); |
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BEGIN { |
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68
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$debug = 0; |
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68
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$VERSION = '1.017'; |
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} |
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use overload |
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68
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'==' => \&RDF::Trine::Graph::_eq, |
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'eq' => \&RDF::Trine::Graph::_eq, |
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'le' => \&RDF::Trine::Graph::_le, |
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'ge' => \&RDF::Trine::Graph::_ge, |
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'lt' => \&RDF::Trine::Graph::_lt, |
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'gt' => \&RDF::Trine::Graph::_gt, |
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68
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68
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477
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; |
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68
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150
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54
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55
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sub _eq { |
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2
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2
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my ($x, $y) = @_; |
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2
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return $x->equals($y); |
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} |
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sub _le { |
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my ($x, $y) = @_; |
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4
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return $x->is_subgraph_of($y); |
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} |
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sub _ge { |
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2
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2
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return _le(@_[1,0]); |
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} |
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69
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sub _lt { |
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4
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4
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my ($x, $y) = @_; |
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# Test::More::diag(sprintf('%s // %s', ref($x), ref($y))); |
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4
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return ($x->size < $y->size) && ($x->is_subgraph_of($y)); |
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} |
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sub _gt { |
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return _lt(@_[1,0]); |
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} |
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68
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42368
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use Data::Dumper; |
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242272
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3612
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80
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474
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use Log::Log4perl; |
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144
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68
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521
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4017
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use Scalar::Util qw(blessed); |
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171
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68
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2764
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82
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68
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68
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22536
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use RDF::Trine::Node; |
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68
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246
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68
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3365
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83
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25199
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use RDF::Trine::Store; |
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302
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83385
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85
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=item C<< new ( $model ) >> |
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87
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=item C<< new ( $iterator ) >> |
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89
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Returns a new graph from the given RDF::Trine::Model or RDF::Trine::Iterator::Graph object. |
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91
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=cut |
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93
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sub new { |
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1
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1299
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my $class = shift; |
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33
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100
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149
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unless (blessed($_[0])) { |
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2
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23
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throw RDF::Trine::Error::MethodInvocationError -text => "RDF::Trine::Graph::new must be called with a Model or Iterator argument"; |
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} |
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99
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31
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70
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my %data; |
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31
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100
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282
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if ($_[0]->isa('RDF::Trine::Iterator::Graph')) { |
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100
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101
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2
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my $iter = shift; |
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2
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my $model = RDF::Trine::Model->new( RDF::Trine::Store->temporary_store() ); |
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2
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while (my $st = $iter->next) { |
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15
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$model->add_statement( $st ); |
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} |
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2
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8
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$data{ model } = $model; |
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} elsif ($_[0]->isa('RDF::Trine::Model')) { |
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78
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$data{ model } = shift; |
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} else { |
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1
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throw RDF::Trine::Error::MethodInvocationError -text => "RDF::Trine::Graph::new must be called with a Model or Iterator argument"; |
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} |
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113
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30
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122
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my $self = bless(\%data, $class); |
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} |
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116
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=item C<< equals ( $graph ) >> |
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118
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Returns true if the invocant and $graph represent two equal RDF graphs (e.g. |
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there exists a bijection between the RDF statements of the invocant and $graph). |
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121
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=cut |
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123
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sub equals { |
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1
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my $self = shift; |
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11
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23
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my $graph = shift; |
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11
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62
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undef($self->{error}); |
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11
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100
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return $self->_check_equality($graph) ? 1 : 0; |
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} |
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130
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sub _check_equality { |
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11
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11
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25
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my $self = shift; |
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11
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20
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my $graph = shift; |
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11
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100
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100
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77
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unless (blessed($graph) and $graph->isa('RDF::Trine::Graph')) { |
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2
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6
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$self->{error} = "RDF::Trine::Graph::equals must be called with a Graph argument"; |
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2
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throw RDF::Trine::Error::MethodInvocationError -text => $self->{error}; |
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} |
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138
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9
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30
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my @graphs = ($self, $graph); |
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9
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33
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my ($ba, $nba) = $self->split_blank_statements; |
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9
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30
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my ($bb, $nbb) = $graph->split_blank_statements; |
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9
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100
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35
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if (scalar(@$nba) != scalar(@$nbb)) { |
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1
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4
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my $nbac = scalar(@$nba); |
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1
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2
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my $nbbc = scalar(@$nbb); |
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1
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5
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$self->{error} = "count of non-blank statements didn't match ($nbac != $nbbc)"; |
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1
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12
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return 0; |
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} |
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147
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8
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21
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my $bac = scalar(@$ba); |
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148
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8
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17
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my $bbc = scalar(@$bb); |
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149
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8
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100
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23
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if ($bac != $bbc) { |
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1
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6
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$self->{error} = "count of blank statements didn't match ($bac != $bbc)"; |
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1
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10
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return 0; |
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152
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} |
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153
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154
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7
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20
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for ($nba, $nbb) { |
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14
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33
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@$_ = sort map { $_->as_string } @$_; |
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12
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33
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156
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} |
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157
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158
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7
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14
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foreach my $i (0 .. $#{ $nba }) { |
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7
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26
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159
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6
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100
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24
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unless ($nba->[$i] eq $nbb->[$i]) { |
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160
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1
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8
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$self->{error} = "non-blank triples don't match: " . Dumper($nba->[$i], $nbb->[$i]); |
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161
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1
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105
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return 0; |
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162
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} |
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163
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} |
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164
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165
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6
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24
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return _find_mapping($self, $ba, $bb); |
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166
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} |
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167
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168
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=item C<< is_subgraph_of ( $graph ) >> |
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169
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170
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Returns true if the invocant is a subgraph of $graph. (i.e. there exists an |
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171
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injection of RDF statements from the invocant to $graph.) |
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172
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173
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=cut |
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174
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175
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sub is_subgraph_of { |
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176
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15
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15
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1
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2512
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my $self = shift; |
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177
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15
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26
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my $graph = shift; |
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178
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15
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71
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undef($self->{error}); |
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179
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15
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100
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46
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return $self->_check_subgraph($graph) ? 1 : 0; |
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180
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} |
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181
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182
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=item C<< injection_map ( $graph ) >> |
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183
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184
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If the invocant is a subgraph of $graph, returns a mapping of blank node |
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185
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identifiers from the invocant graph to $graph as a hashref. Otherwise |
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186
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returns false. The solution is not always unique; where there exist multiple |
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187
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solutions, the solution returned is arbitrary. |
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188
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189
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=cut |
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190
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191
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sub injection_map { |
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192
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0
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0
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1
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0
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my $self = shift; |
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193
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0
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0
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my $graph = shift; |
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194
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0
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0
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undef($self->{error}); |
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195
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0
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0
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my $map = $self->_check_subgraph($graph); |
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196
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0
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0
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0
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return $map if $map; |
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197
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0
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0
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return; |
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198
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} |
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199
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200
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sub _check_subgraph { |
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201
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15
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15
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29
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my $self = shift; |
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202
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15
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25
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my $graph = shift; |
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203
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15
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100
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100
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91
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unless (blessed($graph) and $graph->isa('RDF::Trine::Graph')) { |
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204
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2
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22
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throw RDF::Trine::Error::MethodInvocationError -text => "RDF::Trine::Graph::equals must be called with a Graph argument"; |
|
205
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} |
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206
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207
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13
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37
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my @graphs = ($self, $graph); |
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208
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13
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39
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my ($ba, $nba) = $self->split_blank_statements; |
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209
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13
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39
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my ($bb, $nbb) = $graph->split_blank_statements; |
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210
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211
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13
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50
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60
|
if (scalar(@$nba) > scalar(@$nbb)) { |
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50
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212
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0
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0
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$self->{error} = "invocant had too many blank node statements to be a subgraph of argument"; |
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213
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0
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0
|
return 0; |
|
214
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} elsif (scalar(@$ba) > scalar(@$bb)) { |
|
215
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0
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0
|
$self->{error} = "invocant had too many non-blank node statements to be a subgraph of argument"; |
|
216
|
0
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0
|
return 0; |
|
217
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} |
|
218
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219
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13
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34
|
my %NBB = map { $_->as_string => 1 } @$nbb; |
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|
33
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90
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220
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221
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13
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38
|
foreach my $st (@$nba) { |
|
222
|
11
|
100
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|
30
|
unless ($NBB{ $st->as_string }) { |
|
223
|
1
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|
8
|
return 0; |
|
224
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} |
|
225
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} |
|
226
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227
|
12
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39
|
return _find_mapping($self, $ba, $bb); |
|
228
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|
} |
|
229
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230
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|
sub _find_mapping { |
|
231
|
18
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|
18
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|
46
|
my ($self, $ba, $bb) = @_; |
|
232
|
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233
|
18
|
100
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|
57
|
if (scalar(@$ba) == 0) { |
|
234
|
2
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|
26
|
return {}; |
|
235
|
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|
|
} |
|
236
|
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|
237
|
16
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|
31
|
my %blank_ids_a; |
|
238
|
16
|
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|
33
|
foreach my $st (@$ba) { |
|
239
|
26
|
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|
72
|
foreach my $n (grep { $_->isa('RDF::Trine::Node::Blank') } $st->nodes) { |
|
|
78
|
|
|
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|
239
|
|
|
240
|
30
|
|
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|
|
77
|
$blank_ids_a{ $n->blank_identifier }++; |
|
241
|
|
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|
|
} |
|
242
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|
|
} |
|
243
|
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|
244
|
16
|
|
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|
|
34
|
my %blank_ids_b; |
|
245
|
16
|
|
|
|
|
36
|
foreach my $st (@$bb) { |
|
246
|
40
|
|
|
|
|
113
|
foreach my $n (grep { $_->isa('RDF::Trine::Node::Blank') } $st->nodes) { |
|
|
120
|
|
|
|
|
333
|
|
|
247
|
44
|
|
|
|
|
109
|
$blank_ids_b{ $n->blank_identifier }++; |
|
248
|
|
|
|
|
|
|
} |
|
249
|
|
|
|
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|
|
} |
|
250
|
|
|
|
|
|
|
|
|
251
|
16
|
|
|
|
|
33
|
my %bb_master = map { $_->as_string => 1 } @$bb; |
|
|
40
|
|
|
|
|
96
|
|
|
252
|
|
|
|
|
|
|
|
|
253
|
16
|
|
|
|
|
65
|
my @ka = keys %blank_ids_a; |
|
254
|
16
|
|
|
|
|
43
|
my @kb = keys %blank_ids_b; |
|
255
|
16
|
|
|
|
|
82
|
my $kbp = permutations( \@kb ); |
|
256
|
16
|
|
|
|
|
845
|
my $count = 0; |
|
257
|
16
|
|
|
|
|
55
|
MAPPING: while (my $mapping = $kbp->next) { |
|
258
|
28
|
|
|
|
|
418
|
my %mapping; |
|
259
|
28
|
|
|
|
|
74
|
@mapping{ @ka } = @$mapping; |
|
260
|
28
|
50
|
|
|
|
71
|
warn "trying mapping: " . Dumper(\%mapping) if ($debug); |
|
261
|
|
|
|
|
|
|
|
|
262
|
28
|
|
|
|
|
83
|
my %bb = %bb_master; |
|
263
|
28
|
|
|
|
|
76
|
foreach my $st (@$ba) { |
|
264
|
42
|
|
|
|
|
66
|
my @nodes; |
|
265
|
42
|
|
|
|
|
124
|
foreach my $method ($st->node_names) { |
|
266
|
126
|
|
|
|
|
325
|
my $n = $st->$method(); |
|
267
|
126
|
100
|
|
|
|
404
|
if ($n->isa('RDF::Trine::Node::Blank')) { |
|
268
|
53
|
|
|
|
|
130
|
my $id = $mapping{ $n->blank_identifier }; |
|
269
|
53
|
50
|
|
|
|
121
|
warn "mapping " . $n->blank_identifier . " to $id\n" if ($debug); |
|
270
|
53
|
|
|
|
|
143
|
push(@nodes, RDF::Trine::Node::Blank->new( $id )); |
|
271
|
|
|
|
|
|
|
} else { |
|
272
|
73
|
|
|
|
|
140
|
push(@nodes, $n); |
|
273
|
|
|
|
|
|
|
} |
|
274
|
|
|
|
|
|
|
} |
|
275
|
42
|
|
|
|
|
83
|
my $class = ref($st); |
|
276
|
42
|
|
|
|
|
118
|
my $mapped_st = $class->new( @nodes )->as_string; |
|
277
|
42
|
50
|
|
|
|
122
|
warn "checking for '$mapped_st' in " . Dumper(\%bb) if ($debug); |
|
278
|
42
|
100
|
|
|
|
106
|
if ($bb{ $mapped_st }) { |
|
279
|
26
|
|
|
|
|
82
|
delete $bb{ $mapped_st }; |
|
280
|
|
|
|
|
|
|
} else { |
|
281
|
16
|
|
|
|
|
91
|
next MAPPING; |
|
282
|
|
|
|
|
|
|
} |
|
283
|
|
|
|
|
|
|
} |
|
284
|
12
|
50
|
|
|
|
35
|
$self->{error} = "found mapping: " . Dumper(\%mapping) if ($debug); |
|
285
|
12
|
|
|
|
|
222
|
return \%mapping; |
|
286
|
|
|
|
|
|
|
} |
|
287
|
|
|
|
|
|
|
|
|
288
|
4
|
|
|
|
|
43
|
$self->{error} = "didn't find blank node mapping\n"; |
|
289
|
4
|
|
|
|
|
50
|
return 0; |
|
290
|
|
|
|
|
|
|
} |
|
291
|
|
|
|
|
|
|
|
|
292
|
|
|
|
|
|
|
=item C<< split_blank_statements >> |
|
293
|
|
|
|
|
|
|
|
|
294
|
|
|
|
|
|
|
Returns two array refs, containing triples with blank nodes and triples without |
|
295
|
|
|
|
|
|
|
any blank nodes, respectively. |
|
296
|
|
|
|
|
|
|
|
|
297
|
|
|
|
|
|
|
=cut |
|
298
|
|
|
|
|
|
|
|
|
299
|
|
|
|
|
|
|
sub split_blank_statements { |
|
300
|
44
|
|
|
44
|
1
|
78
|
my $self = shift; |
|
301
|
44
|
|
|
|
|
255
|
my $iter = $self->get_statements; |
|
302
|
44
|
|
|
|
|
98
|
my (@blanks, @nonblanks); |
|
303
|
44
|
|
|
|
|
149
|
while (my $st = $iter->next) { |
|
304
|
135
|
100
|
|
|
|
321
|
if ($st->has_blanks) { |
|
305
|
75
|
|
|
|
|
252
|
push(@blanks, $st); |
|
306
|
|
|
|
|
|
|
} else { |
|
307
|
60
|
|
|
|
|
185
|
push(@nonblanks, $st); |
|
308
|
|
|
|
|
|
|
} |
|
309
|
|
|
|
|
|
|
} |
|
310
|
44
|
|
|
|
|
396
|
return (\@blanks, \@nonblanks); |
|
311
|
|
|
|
|
|
|
} |
|
312
|
|
|
|
|
|
|
|
|
313
|
|
|
|
|
|
|
=item C<< get_statements >> |
|
314
|
|
|
|
|
|
|
|
|
315
|
|
|
|
|
|
|
Returns a RDF::Trine::Iterator::Graph object for the statements in this graph. |
|
316
|
|
|
|
|
|
|
|
|
317
|
|
|
|
|
|
|
=cut |
|
318
|
|
|
|
|
|
|
|
|
319
|
|
|
|
|
|
|
# The code below actually goes further now and makes RDF::Trine::Graph |
|
320
|
|
|
|
|
|
|
# into a subclass of RDF::Trine::Model via object delegation. This feature |
|
321
|
|
|
|
|
|
|
# is undocumented as it's not clear whether this is desirable or not. |
|
322
|
|
|
|
|
|
|
|
|
323
|
|
|
|
|
|
|
=begin private |
|
324
|
|
|
|
|
|
|
|
|
325
|
|
|
|
|
|
|
=item C<< isa >> |
|
326
|
|
|
|
|
|
|
|
|
327
|
|
|
|
|
|
|
=cut |
|
328
|
|
|
|
|
|
|
|
|
329
|
|
|
|
|
|
|
sub isa { |
|
330
|
46
|
|
|
46
|
1
|
6536
|
my ($proto, $queried) = @_; |
|
331
|
46
|
50
|
|
|
|
142
|
$proto = ref($proto) if ref($proto); |
|
332
|
46
|
|
33
|
|
|
281
|
return UNIVERSAL::isa($proto, $queried) || RDF::Trine::Model->isa($queried); |
|
333
|
|
|
|
|
|
|
} |
|
334
|
|
|
|
|
|
|
|
|
335
|
|
|
|
|
|
|
=item C<< can >> |
|
336
|
|
|
|
|
|
|
|
|
337
|
|
|
|
|
|
|
=cut |
|
338
|
|
|
|
|
|
|
|
|
339
|
|
|
|
|
|
|
sub can { |
|
340
|
1
|
|
|
1
|
1
|
16
|
my ($proto, $queried) = @_; |
|
341
|
1
|
50
|
|
|
|
5
|
$proto = ref($proto) if ref($proto); |
|
342
|
1
|
|
33
|
|
|
11
|
return UNIVERSAL::can($proto, $queried) || RDF::Trine::Model->can($queried); |
|
343
|
|
|
|
|
|
|
} |
|
344
|
|
|
|
|
|
|
|
|
345
|
|
|
|
|
|
|
sub AUTOLOAD { |
|
346
|
82
|
|
|
82
|
|
6982
|
my $self = shift; |
|
347
|
82
|
100
|
|
|
|
399
|
return if $AUTOLOAD =~ /::DESTROY$/; |
|
348
|
52
|
|
|
|
|
309
|
$AUTOLOAD =~ s/^(.+)::([^:]+)$/$2/; |
|
349
|
52
|
|
|
|
|
246
|
return $self->{model}->$AUTOLOAD(@_); |
|
350
|
|
|
|
|
|
|
} |
|
351
|
|
|
|
|
|
|
|
|
352
|
|
|
|
|
|
|
=end private |
|
353
|
|
|
|
|
|
|
|
|
354
|
|
|
|
|
|
|
=item C<< error >> |
|
355
|
|
|
|
|
|
|
|
|
356
|
|
|
|
|
|
|
Returns an error string explaining the last failed C<< equal >> call. |
|
357
|
|
|
|
|
|
|
|
|
358
|
|
|
|
|
|
|
=cut |
|
359
|
|
|
|
|
|
|
|
|
360
|
|
|
|
|
|
|
sub error { |
|
361
|
0
|
|
|
0
|
1
|
|
my $self = shift; |
|
362
|
0
|
|
|
|
|
|
return $self->{error}; |
|
363
|
|
|
|
|
|
|
} |
|
364
|
|
|
|
|
|
|
|
|
365
|
|
|
|
|
|
|
1; |
|
366
|
|
|
|
|
|
|
|
|
367
|
|
|
|
|
|
|
__END__ |
|
368
|
|
|
|
|
|
|
|
|
369
|
|
|
|
|
|
|
=back |
|
370
|
|
|
|
|
|
|
|
|
371
|
|
|
|
|
|
|
=head1 BUGS |
|
372
|
|
|
|
|
|
|
|
|
373
|
|
|
|
|
|
|
Please report any bugs or feature requests to through the GitHub web interface |
|
374
|
|
|
|
|
|
|
at L<https://github.com/kasei/perlrdf/issues>. |
|
375
|
|
|
|
|
|
|
|
|
376
|
|
|
|
|
|
|
=head1 AUTHOR |
|
377
|
|
|
|
|
|
|
|
|
378
|
|
|
|
|
|
|
Gregory Todd Williams C<< <gwilliams@cpan.org> >> |
|
379
|
|
|
|
|
|
|
|
|
380
|
|
|
|
|
|
|
=head1 COPYRIGHT |
|
381
|
|
|
|
|
|
|
|
|
382
|
|
|
|
|
|
|
Copyright (c) 2006-2012 Gregory Todd Williams. This |
|
383
|
|
|
|
|
|
|
program is free software; you can redistribute it and/or modify it under |
|
384
|
|
|
|
|
|
|
the same terms as Perl itself. |
|
385
|
|
|
|
|
|
|
|
|
386
|
|
|
|
|
|
|
=cut |