|  line  | 
 stmt  | 
 bran  | 
 cond  | 
 sub  | 
 pod  | 
 time  | 
 code  | 
| 
1
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 # perl program  | 
| 
2
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 # requires: R instance with local repo  | 
| 
3
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 # pulls: a list of package ids and the package tars  | 
| 
4
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 # isntalls: R binary, R packages on local machine  | 
| 
5
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 #  | 
| 
6
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 # Copyright (C) 2015, Snehasis Sinha   | 
| 
7
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 #  | 
| 
8
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    | 
| 
9
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 package R::Setup::Local;  | 
| 
10
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    | 
| 
11
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2
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2
  
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21188
 | 
 use 5.010001;  | 
| 
 
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2
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7
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    | 
| 
12
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2
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2
  
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11
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 use strict;  | 
| 
 
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2
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3
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    | 
| 
 
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2
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43
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    | 
| 
13
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2
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2
  
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8
 | 
 use warnings;  | 
| 
 
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2
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4
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    | 
| 
 
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2
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 | 
50
 | 
    | 
| 
14
 | 
2
 | 
 
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 | 
  
2
  
 | 
 
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1013
 | 
 use LWP::UserAgent;  | 
| 
 
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2
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 | 
51134
 | 
    | 
| 
 
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2
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 | 
119
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    | 
| 
15
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    | 
| 
16
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 our @ISA = qw();  | 
| 
17
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 our $VERSION = '0.01';  | 
| 
18
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    | 
| 
19
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2
 | 
 
 | 
 
 | 
  
2
  
 | 
 
 | 
1294
 | 
 BEGIN { $| = 1 } # flush STDOUT buffer  | 
| 
20
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    | 
| 
21
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 # package methods  | 
| 
22
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    | 
| 
23
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 sub new {  | 
| 
24
 | 
  
0
  
 | 
 
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 | 
  
0
  
 | 
  
0
  
 | 
 
 | 
 	my $class = shift;  | 
| 
25
 | 
  
0
  
 | 
 
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 | 
 
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 | 
 	my %params = @_;  | 
| 
26
 | 
 
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 	my $self = {  | 
| 
27
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 		_url      => $params{'urlbase'}, # local url  | 
| 
28
 | 
 
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 		_pkglist  => $params{'packagelist'} || 'tarlist', #list of tars   | 
| 
29
 | 
 
 | 
 
 | 
 
 | 
 
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 | 
 
 | 
 		_binary   => $params{'binary'} || 'R-3.1.2.tar.gz',  | 
| 
30
 | 
 
 | 
 
 | 
 
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 | 
 
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 | 
 		_lwp      => undef,  | 
| 
31
 | 
  
0
  
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 		_verbose  => $params{'verbose'} || 1, # default:yes  | 
| 
 
 | 
 
 | 
 
 | 
  
  0
  
 | 
 
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 | 
 
 | 
    | 
| 
 
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 | 
  
  0
  
 | 
 
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 | 
    | 
| 
32
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 	};  | 
| 
33
 | 
  
0
  
 | 
 
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 	bless $self, $class;  | 
| 
34
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
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 	return $self;  | 
| 
35
 | 
 
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 | 
 }  | 
| 
36
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    | 
| 
37
 | 
 
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 | 
 # wget implementation  | 
| 
38
 | 
 
 | 
 
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 | 
 
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 # package=>pkg_ver.tar.gz or R-3.1.2.tar.gz  | 
| 
39
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
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 # type=>package index source  | 
| 
40
 | 
 
 | 
 
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 | 
 
 | 
 
 | 
 
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 sub p_wget {  | 
| 
41
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
  
0
  
 | 
 
 | 
 	my ($self, %args) = (@_);  | 
| 
42
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	my $res;  | 
| 
43
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	my $uri = $self->{'_url'};  | 
| 
44
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
45
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	$uri .= "/".$args{'package'};  | 
| 
46
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	$res = $self->{'_lwp'}->get ( $uri );  | 
| 
47
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
48
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	if ( $res->is_success ) {  | 
| 
49
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		open TARGZ, '>'.$args{'package'} or die $!;  | 
| 
50
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		print TARGZ $res->decoded_content;  | 
| 
51
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		close TARGZ;  | 
| 
52
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	}  | 
| 
53
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	return $res->is_success;  | 
| 
54
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
55
 | 
 
 | 
 
 | 
 
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 | 
 
 | 
 
 | 
    | 
| 
56
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub p_connect {  | 
| 
57
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
  
0
  
 | 
 
 | 
 	my ($self) = (@_);  | 
| 
58
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	  | 
| 
59
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	unless (defined $self->{'_lwp'}) {  | 
| 
60
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		$self->{'_lwp'} = LWP::UserAgent->new;   | 
| 
61
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		$self->{'_lwp'}->timeout(10);  | 
| 
62
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		print "user agent connected\n" if $self->{'_verbose'};  | 
| 
63
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	}  | 
| 
64
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
65
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
66
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub pr {  | 
| 
67
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
  
0
  
 | 
 
 | 
 	my ($self, %args) = (@_);  | 
| 
68
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	return unless $self->{'_verbose'};  | 
| 
69
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	print sprintf "%-40s ... ", $args{message} if defined $args{message};  | 
| 
70
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	print sprintf " _%s_\n", $args{state} if defined $args{state};  | 
| 
71
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
72
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
73
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub download_local {  | 
| 
74
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
  
0
  
 | 
 
 | 
 	my ($self) = (@_);  | 
| 
75
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
76
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	# connect  | 
| 
77
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	$self->p_connect;  | 
| 
78
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
79
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	# download binary  | 
| 
80
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	if ( -f $self->{'_binary'} ) {  | 
| 
81
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		$self->pr ( message=>$self->{'_binary'}, state=>'here' );  | 
| 
82
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	} else {  | 
| 
83
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		$self->pr ( message=>$self->{'_binary'} );  | 
| 
84
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		$self->p_wget( package => $self->{'_binary'} )   | 
| 
85
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			? $self->pr ( state=>'done' )  | 
| 
86
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			: $self->pr ( state=>'failed' )  | 
| 
87
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	}  | 
| 
88
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
89
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	# download package list  | 
| 
90
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	unless ( -f $self->{'_pkglist'} ) {  | 
| 
91
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		$self->pr ( message=>$self->{'_pkglist'} );  | 
| 
92
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		$self->p_wget( package => $self->{'_pkglist'} )   | 
| 
93
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			? $self->pr ( state=>'done' )  | 
| 
94
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			: $self->pr ( state=>'failed' )  | 
| 
95
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	}  | 
| 
96
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		  | 
| 
97
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	# download packages  | 
| 
98
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	open PACKAGES, '<'.$self->{'_pkglist'} or die $!;  | 
| 
99
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	while (  ) {  | 
| 
100
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		chomp;  | 
| 
101
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		if ( -f $_ ) {   | 
| 
102
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			$self->pr ( message=>$_, state=>'here' );  | 
| 
103
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			next;   | 
| 
104
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		}  | 
| 
105
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		$self->pr ( message=>$_ );  | 
| 
106
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		$self->p_wget( package => $_ )   | 
| 
107
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			? $self->pr ( state=>'done' )  | 
| 
108
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			: $self->pr ( state=>'failed' )  | 
| 
109
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	}  | 
| 
110
 | 
0
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	close PACKAGES;  | 
| 
111
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
112
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
113
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 1;  | 
| 
114
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
115
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 __END__  |