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2
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#line 453 "lib/PDL/PP.pm" |
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3
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/* |
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4
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* THIS FILE WAS GENERATED BY PDL::PP from lib/PDL/Stats/Basic.pd! Do not modify! |
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5
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*/ |
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6
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7
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#define PDL_FREE_CODE(trans, destroy, comp_free_code, ntpriv_free_code) \ |
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8
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if (destroy) { \ |
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9
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comp_free_code \ |
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10
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} \ |
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11
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if ((trans)->dims_redone) { \ |
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12
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ntpriv_free_code \ |
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13
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} |
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14
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15
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#include "EXTERN.h" |
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16
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#include "perl.h" |
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17
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#include "XSUB.h" |
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18
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#include "pdl.h" |
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19
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#include "pdlcore.h" |
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20
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#define PDL PDL_Stats_Basic |
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21
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extern Core* PDL; /* Structure hold core C functions */ |
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22
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#line 23 "lib/PDL/Stats/Basic-pp-cov_table.c" |
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23
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24
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#include |
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25
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26
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#line 1857 "lib/PDL/PP.pm" |
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27
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pdl_error pdl_cov_table_redodims(pdl_trans *__privtrans) { |
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28
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pdl_error PDL_err = {0, NULL, 0}; |
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29
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#line 30 "lib/PDL/Stats/Basic-pp-cov_table.c" |
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30
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#ifndef PDL_DECLARE_PARAMS_cov_table_0 |
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31
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#define PDL_DECLARE_PARAMS_cov_table_0(PDL_TYPE_OP,PDL_PPSYM_OP) \ |
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32
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PDL_DECLARE_PARAMETER_BADVAL(PDL_TYPE_OP, a, (__privtrans->pdls[0]), 0, PDL_PPSYM_OP) \ |
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33
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PDL_DECLARE_PARAMETER_BADVAL(PDL_TYPE_OP, c, (__privtrans->pdls[1]), 0, PDL_PPSYM_OP) |
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34
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#endif |
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35
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#define PDL_IF_BAD(t,f) f |
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36
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3
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switch (__privtrans->__datatype) { /* Start generic switch */ |
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37
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0
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case PDL_SB: { |
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38
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0
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0
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PDL_DECLARE_PARAMS_cov_table_0(PDL_SByte,A) |
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0
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0
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0
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39
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
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40
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0
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} break; |
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41
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0
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case PDL_B: { |
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42
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0
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0
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PDL_DECLARE_PARAMS_cov_table_0(PDL_Byte,B) |
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0
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0
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0
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43
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
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44
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0
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} break; |
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45
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0
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case PDL_S: { |
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46
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0
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0
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PDL_DECLARE_PARAMS_cov_table_0(PDL_Short,S) |
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0
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0
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0
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47
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
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48
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0
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} break; |
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49
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0
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case PDL_US: { |
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50
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0
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0
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PDL_DECLARE_PARAMS_cov_table_0(PDL_Ushort,U) |
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0
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0
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0
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51
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
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52
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0
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} break; |
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53
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0
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case PDL_L: { |
|
54
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0
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0
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PDL_DECLARE_PARAMS_cov_table_0(PDL_Long,L) |
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0
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0
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0
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55
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
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56
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0
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} break; |
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57
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0
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case PDL_UL: { |
|
58
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0
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0
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PDL_DECLARE_PARAMS_cov_table_0(PDL_ULong,K) |
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0
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0
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0
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59
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
|
60
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0
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} break; |
|
61
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0
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case PDL_IND: { |
|
62
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0
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0
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PDL_DECLARE_PARAMS_cov_table_0(PDL_Indx,N) |
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0
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0
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0
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63
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
|
64
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0
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|
} break; |
|
65
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0
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|
case PDL_ULL: { |
|
66
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0
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0
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PDL_DECLARE_PARAMS_cov_table_0(PDL_ULongLong,P) |
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0
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0
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0
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67
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
|
68
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0
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} break; |
|
69
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0
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case PDL_LL: { |
|
70
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0
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0
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PDL_DECLARE_PARAMS_cov_table_0(PDL_LongLong,Q) |
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0
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0
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0
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71
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
|
72
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0
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} break; |
|
73
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0
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case PDL_F: { |
|
74
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0
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0
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PDL_DECLARE_PARAMS_cov_table_0(PDL_Float,F) |
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0
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0
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0
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|
75
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
|
76
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0
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} break; |
|
77
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3
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case PDL_D: { |
|
78
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3
|
50
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PDL_DECLARE_PARAMS_cov_table_0(PDL_Double,D) |
|
|
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50
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50
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50
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79
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3
|
50
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
|
80
|
3
|
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} break; |
|
81
|
0
|
|
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case PDL_LD: { |
|
82
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0
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0
|
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PDL_DECLARE_PARAMS_cov_table_0(PDL_LDouble,E) |
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|
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0
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0
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0
|
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83
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0
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0
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{if (__privtrans->ind_sizes[1] < 2) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "too few N");} |
|
84
|
0
|
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} break; |
|
85
|
0
|
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default: return PDL->make_error(PDL_EUSERERROR, "PP INTERNAL ERROR in cov_table: unhandled datatype(%d), only handles (ABSULKNPQFDE)! PLEASE MAKE A BUG REPORT\n", __privtrans->__datatype); |
|
86
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} |
|
87
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#undef PDL_IF_BAD |
|
88
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|
89
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3
|
50
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PDL_RETERROR(PDL_err, PDL->redodims_default(__privtrans)); |
|
90
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3
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return PDL_err; |
|
91
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|
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} |
|
92
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|
|
93
|
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|
94
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#line 1857 "lib/PDL/PP.pm" |
|
95
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pdl_error pdl_cov_table_readdata(pdl_trans *__privtrans) { |
|
96
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|
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|
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|
|
pdl_error PDL_err = {0, NULL, 0}; |
|
97
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|
#line 98 "lib/PDL/Stats/Basic-pp-cov_table.c" |
|
98
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3
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|
register PDL_Indx __n_size = __privtrans->ind_sizes[1]; |
|
99
|
3
|
50
|
|
|
|
|
if (!__privtrans->broadcast.incs) return PDL->make_error(PDL_EUSERERROR, "Error in cov_table:" "broadcast.incs NULL"); |
|
100
|
|
|
|
|
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|
/* broadcastloop declarations */ |
|
101
|
|
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|
|
int __brcloopval; |
|
102
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|
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|
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|
|
register PDL_Indx __tind0,__tind1; /* counters along dim */ |
|
103
|
3
|
|
|
|
|
|
register PDL_Indx __tnpdls = __privtrans->broadcast.npdls; |
|
104
|
|
|
|
|
|
|
/* dims here are how many steps along those dims */ |
|
105
|
3
|
|
|
|
|
|
register PDL_Indx __tinc0_a = PDL_BRC_INC(__privtrans->broadcast.incs,__tnpdls,0,0); |
|
106
|
3
|
|
|
|
|
|
register PDL_Indx __tinc0_c = PDL_BRC_INC(__privtrans->broadcast.incs,__tnpdls,1,0); |
|
107
|
3
|
|
|
|
|
|
register PDL_Indx __tinc1_a = PDL_BRC_INC(__privtrans->broadcast.incs,__tnpdls,0,1); |
|
108
|
3
|
|
|
|
|
|
register PDL_Indx __tinc1_c = PDL_BRC_INC(__privtrans->broadcast.incs,__tnpdls,1,1); |
|
109
|
|
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|
#define PDL_BROADCASTLOOP_START_cov_table_readdata PDL_BROADCASTLOOP_START( \ |
|
110
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|
readdata, \ |
|
111
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|
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|
|
__privtrans->broadcast, \ |
|
112
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|
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|
|
__privtrans->vtable, \ |
|
113
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|
|
a_datap += __offsp[0]; \ |
|
114
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|
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|
|
c_datap += __offsp[1]; \ |
|
115
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, \ |
|
116
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( ,a_datap += __tinc1_a - __tinc0_a * __tdims0 \ |
|
117
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|
,c_datap += __tinc1_c - __tinc0_c * __tdims0 \ |
|
118
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|
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|
), \ |
|
119
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( ,a_datap += __tinc0_a \ |
|
120
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|
,c_datap += __tinc0_c \ |
|
121
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|
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) \ |
|
122
|
|
|
|
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|
|
) |
|
123
|
|
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|
#define PDL_BROADCASTLOOP_END_cov_table_readdata PDL_BROADCASTLOOP_END( \ |
|
124
|
|
|
|
|
|
|
__privtrans->broadcast, \ |
|
125
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|
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|
a_datap -= __tinc1_a * __tdims1 + __offsp[0]; \ |
|
126
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|
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|
|
|
|
c_datap -= __tinc1_c * __tdims1 + __offsp[1]; \ |
|
127
|
|
|
|
|
|
|
) |
|
128
|
3
|
|
|
|
|
|
register PDL_Indx __inc_a_n = __privtrans->inc_sizes[PDL_INC_ID(__privtrans->vtable,0,0)]; (void)__inc_a_n;register PDL_Indx __inc_a_m = __privtrans->inc_sizes[PDL_INC_ID(__privtrans->vtable,0,1)]; (void)__inc_a_m; |
|
129
|
3
|
|
|
|
|
|
register PDL_Indx __inc_c_m0 = __privtrans->inc_sizes[PDL_INC_ID(__privtrans->vtable,1,0)]; (void)__inc_c_m0;register PDL_Indx __inc_c_m1 = __privtrans->inc_sizes[PDL_INC_ID(__privtrans->vtable,1,1)]; (void)__inc_c_m1; |
|
130
|
|
|
|
|
|
|
#ifndef PDL_DECLARE_PARAMS_cov_table_1 |
|
131
|
|
|
|
|
|
|
#define PDL_DECLARE_PARAMS_cov_table_1(PDL_TYPE_OP,PDL_PPSYM_OP) \ |
|
132
|
|
|
|
|
|
|
PDL_DECLARE_PARAMETER_BADVAL(PDL_TYPE_OP, a, (__privtrans->pdls[0]), 1, PDL_PPSYM_OP) \ |
|
133
|
|
|
|
|
|
|
PDL_DECLARE_PARAMETER_BADVAL(PDL_TYPE_OP, c, (__privtrans->pdls[1]), 1, PDL_PPSYM_OP) |
|
134
|
|
|
|
|
|
|
#endif |
|
135
|
3
|
100
|
|
|
|
|
if ( __privtrans->bvalflag ) { /* ** do 'bad' Code ** */ |
|
136
|
|
|
|
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|
|
#define PDL_BAD_CODE |
|
137
|
|
|
|
|
|
|
#define PDL_IF_BAD(t,f) t |
|
138
|
1
|
|
|
|
|
|
switch (__privtrans->__datatype) { /* Start generic switch */ |
|
139
|
0
|
|
|
|
|
|
case PDL_SB: { |
|
140
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_SByte,A) |
|
|
|
0
|
|
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|
|
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0
|
|
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0
|
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0
|
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|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
141
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
142
|
|
|
|
|
|
|
PDL_SByte a_, b_; |
|
143
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
144
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
145
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
146
|
0
|
|
|
|
|
|
PDL_SByte ab = 0, sa = 0, sb = 0; |
|
147
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
148
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
149
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,A,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,A,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
150
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
151
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
152
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
153
|
|
|
|
|
|
|
}} /* Close n */ |
|
154
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
155
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
156
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
157
|
0
|
|
|
|
|
|
continue; |
|
158
|
|
|
|
|
|
|
} |
|
159
|
0
|
|
|
|
|
|
PDL_SByte cov = ab - (sa * sb) / N; |
|
160
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
161
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
162
|
|
|
|
|
|
|
} |
|
163
|
|
|
|
|
|
|
} |
|
164
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
165
|
0
|
|
|
|
|
|
} break; |
|
166
|
0
|
|
|
|
|
|
case PDL_B: { |
|
167
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Byte,B) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
168
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
169
|
|
|
|
|
|
|
PDL_Byte a_, b_; |
|
170
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
171
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
172
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
173
|
0
|
|
|
|
|
|
PDL_Byte ab = 0, sa = 0, sb = 0; |
|
174
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
175
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
176
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,B,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,B,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
177
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
178
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
179
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
180
|
|
|
|
|
|
|
}} /* Close n */ |
|
181
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
182
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
183
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
184
|
0
|
|
|
|
|
|
continue; |
|
185
|
|
|
|
|
|
|
} |
|
186
|
0
|
|
|
|
|
|
PDL_Byte cov = ab - (sa * sb) / N; |
|
187
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
188
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
189
|
|
|
|
|
|
|
} |
|
190
|
|
|
|
|
|
|
} |
|
191
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
192
|
0
|
|
|
|
|
|
} break; |
|
193
|
0
|
|
|
|
|
|
case PDL_S: { |
|
194
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Short,S) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
195
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
196
|
|
|
|
|
|
|
PDL_Short a_, b_; |
|
197
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
198
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
199
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
200
|
0
|
|
|
|
|
|
PDL_Short ab = 0, sa = 0, sb = 0; |
|
201
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
202
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
203
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,S,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,S,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
204
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
205
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
206
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
207
|
|
|
|
|
|
|
}} /* Close n */ |
|
208
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
209
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
210
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
211
|
0
|
|
|
|
|
|
continue; |
|
212
|
|
|
|
|
|
|
} |
|
213
|
0
|
|
|
|
|
|
PDL_Short cov = ab - (sa * sb) / N; |
|
214
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
215
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
216
|
|
|
|
|
|
|
} |
|
217
|
|
|
|
|
|
|
} |
|
218
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
219
|
0
|
|
|
|
|
|
} break; |
|
220
|
0
|
|
|
|
|
|
case PDL_US: { |
|
221
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Ushort,U) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
222
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
223
|
|
|
|
|
|
|
PDL_Ushort a_, b_; |
|
224
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
225
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
226
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
227
|
0
|
|
|
|
|
|
PDL_Ushort ab = 0, sa = 0, sb = 0; |
|
228
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
229
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
230
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,U,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,U,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
231
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
232
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
233
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
234
|
|
|
|
|
|
|
}} /* Close n */ |
|
235
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
236
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
237
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
238
|
0
|
|
|
|
|
|
continue; |
|
239
|
|
|
|
|
|
|
} |
|
240
|
0
|
|
|
|
|
|
PDL_Ushort cov = ab - (sa * sb) / N; |
|
241
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
242
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
243
|
|
|
|
|
|
|
} |
|
244
|
|
|
|
|
|
|
} |
|
245
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
246
|
0
|
|
|
|
|
|
} break; |
|
247
|
0
|
|
|
|
|
|
case PDL_L: { |
|
248
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Long,L) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
249
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
250
|
|
|
|
|
|
|
PDL_Long a_, b_; |
|
251
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
252
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
253
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
254
|
0
|
|
|
|
|
|
PDL_Long ab = 0, sa = 0, sb = 0; |
|
255
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
256
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
257
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,L,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,L,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
258
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
259
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
260
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
261
|
|
|
|
|
|
|
}} /* Close n */ |
|
262
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
263
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
264
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
265
|
0
|
|
|
|
|
|
continue; |
|
266
|
|
|
|
|
|
|
} |
|
267
|
0
|
|
|
|
|
|
PDL_Long cov = ab - (sa * sb) / N; |
|
268
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
269
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
270
|
|
|
|
|
|
|
} |
|
271
|
|
|
|
|
|
|
} |
|
272
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
273
|
0
|
|
|
|
|
|
} break; |
|
274
|
0
|
|
|
|
|
|
case PDL_UL: { |
|
275
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_ULong,K) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
276
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
277
|
|
|
|
|
|
|
PDL_ULong a_, b_; |
|
278
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
279
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
280
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
281
|
0
|
|
|
|
|
|
PDL_ULong ab = 0, sa = 0, sb = 0; |
|
282
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
283
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
284
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,K,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,K,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
285
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
286
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
287
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
288
|
|
|
|
|
|
|
}} /* Close n */ |
|
289
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
290
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
291
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
292
|
0
|
|
|
|
|
|
continue; |
|
293
|
|
|
|
|
|
|
} |
|
294
|
0
|
|
|
|
|
|
PDL_ULong cov = ab - (sa * sb) / N; |
|
295
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
296
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
297
|
|
|
|
|
|
|
} |
|
298
|
|
|
|
|
|
|
} |
|
299
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
300
|
0
|
|
|
|
|
|
} break; |
|
301
|
0
|
|
|
|
|
|
case PDL_IND: { |
|
302
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Indx,N) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
303
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
304
|
|
|
|
|
|
|
PDL_Indx a_, b_; |
|
305
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
306
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
307
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
308
|
0
|
|
|
|
|
|
PDL_Indx ab = 0, sa = 0, sb = 0; |
|
309
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
310
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
311
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,N,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,N,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
312
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
313
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
314
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
315
|
|
|
|
|
|
|
}} /* Close n */ |
|
316
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
317
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
318
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
319
|
0
|
|
|
|
|
|
continue; |
|
320
|
|
|
|
|
|
|
} |
|
321
|
0
|
|
|
|
|
|
PDL_Indx cov = ab - (sa * sb) / N; |
|
322
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
323
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
324
|
|
|
|
|
|
|
} |
|
325
|
|
|
|
|
|
|
} |
|
326
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
327
|
0
|
|
|
|
|
|
} break; |
|
328
|
0
|
|
|
|
|
|
case PDL_ULL: { |
|
329
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_ULongLong,P) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
330
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
331
|
|
|
|
|
|
|
PDL_ULongLong a_, b_; |
|
332
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
333
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
334
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
335
|
0
|
|
|
|
|
|
PDL_ULongLong ab = 0, sa = 0, sb = 0; |
|
336
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
337
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
338
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,P,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,P,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
339
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
340
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
341
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
342
|
|
|
|
|
|
|
}} /* Close n */ |
|
343
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
344
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
345
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
346
|
0
|
|
|
|
|
|
continue; |
|
347
|
|
|
|
|
|
|
} |
|
348
|
0
|
|
|
|
|
|
PDL_ULongLong cov = ab - (sa * sb) / N; |
|
349
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
350
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
351
|
|
|
|
|
|
|
} |
|
352
|
|
|
|
|
|
|
} |
|
353
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
354
|
0
|
|
|
|
|
|
} break; |
|
355
|
0
|
|
|
|
|
|
case PDL_LL: { |
|
356
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_LongLong,Q) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
357
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
358
|
|
|
|
|
|
|
PDL_LongLong a_, b_; |
|
359
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
360
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
361
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
362
|
0
|
|
|
|
|
|
PDL_LongLong ab = 0, sa = 0, sb = 0; |
|
363
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
364
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
365
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,Q,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,Q,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
366
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
367
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
368
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
369
|
|
|
|
|
|
|
}} /* Close n */ |
|
370
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
371
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
372
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
373
|
0
|
|
|
|
|
|
continue; |
|
374
|
|
|
|
|
|
|
} |
|
375
|
0
|
|
|
|
|
|
PDL_LongLong cov = ab - (sa * sb) / N; |
|
376
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
377
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
378
|
|
|
|
|
|
|
} |
|
379
|
|
|
|
|
|
|
} |
|
380
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
381
|
0
|
|
|
|
|
|
} break; |
|
382
|
0
|
|
|
|
|
|
case PDL_F: { |
|
383
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Float,F) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
384
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
385
|
|
|
|
|
|
|
PDL_Float a_, b_; |
|
386
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
387
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
388
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
389
|
0
|
|
|
|
|
|
PDL_Float ab = 0, sa = 0, sb = 0; |
|
390
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
391
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
392
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,F,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,F,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
393
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
394
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
395
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
396
|
|
|
|
|
|
|
}} /* Close n */ |
|
397
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
398
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
399
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
400
|
0
|
|
|
|
|
|
continue; |
|
401
|
|
|
|
|
|
|
} |
|
402
|
0
|
|
|
|
|
|
PDL_Float cov = ab - (sa * sb) / N; |
|
403
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
404
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
405
|
|
|
|
|
|
|
} |
|
406
|
|
|
|
|
|
|
} |
|
407
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
408
|
0
|
|
|
|
|
|
} break; |
|
409
|
1
|
|
|
|
|
|
case PDL_D: { |
|
410
|
1
|
50
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Double,D) |
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
411
|
4
|
50
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
100
|
|
|
|
|
|
|
|
|
100
|
|
|
|
|
|
|
412
|
|
|
|
|
|
|
PDL_Double a_, b_; |
|
413
|
1
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
414
|
4
|
100
|
|
|
|
|
for (i=0; i
|
|
415
|
9
|
100
|
|
|
|
|
for (j=i; j
|
|
416
|
6
|
|
|
|
|
|
PDL_Double ab = 0, sa = 0, sb = 0; |
|
417
|
6
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
418
|
66
|
100
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
419
|
60
|
50
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,D,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,D,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
100
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
420
|
57
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
421
|
57
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
422
|
57
|
|
|
|
|
|
ab += a_ * b_; |
|
423
|
|
|
|
|
|
|
}} /* Close n */ |
|
424
|
6
|
50
|
|
|
|
|
if (N < 2) { |
|
425
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
426
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
427
|
0
|
|
|
|
|
|
continue; |
|
428
|
|
|
|
|
|
|
} |
|
429
|
6
|
|
|
|
|
|
PDL_Double cov = ab - (sa * sb) / N; |
|
430
|
6
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
431
|
6
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
432
|
|
|
|
|
|
|
} |
|
433
|
|
|
|
|
|
|
} |
|
434
|
1
|
50
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
50
|
|
|
|
|
|
|
435
|
1
|
|
|
|
|
|
} break; |
|
436
|
0
|
|
|
|
|
|
case PDL_LD: { |
|
437
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_LDouble,E) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
438
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
439
|
|
|
|
|
|
|
PDL_LDouble a_, b_; |
|
440
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
441
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
442
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
443
|
0
|
|
|
|
|
|
PDL_LDouble ab = 0, sa = 0, sb = 0; |
|
444
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
445
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
446
|
0
|
0
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,E,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,E,a_badval_isnan)) continue; N++;,) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
447
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
448
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
449
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
450
|
|
|
|
|
|
|
}} /* Close n */ |
|
451
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
452
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
453
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
454
|
0
|
|
|
|
|
|
continue; |
|
455
|
|
|
|
|
|
|
} |
|
456
|
0
|
|
|
|
|
|
PDL_LDouble cov = ab - (sa * sb) / N; |
|
457
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
458
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
459
|
|
|
|
|
|
|
} |
|
460
|
|
|
|
|
|
|
} |
|
461
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
462
|
0
|
|
|
|
|
|
} break; |
|
463
|
0
|
|
|
|
|
|
default: return PDL->make_error(PDL_EUSERERROR, "PP INTERNAL ERROR in cov_table: unhandled datatype(%d), only handles (ABSULKNPQFDE)! PLEASE MAKE A BUG REPORT\n", __privtrans->__datatype); |
|
464
|
|
|
|
|
|
|
} |
|
465
|
|
|
|
|
|
|
#undef PDL_BAD_CODE |
|
466
|
|
|
|
|
|
|
#undef PDL_IF_BAD |
|
467
|
|
|
|
|
|
|
} else { /* ** else do 'good' Code ** */ |
|
468
|
|
|
|
|
|
|
#define PDL_IF_BAD(t,f) f |
|
469
|
2
|
|
|
|
|
|
switch (__privtrans->__datatype) { /* Start generic switch */ |
|
470
|
0
|
|
|
|
|
|
case PDL_SB: { |
|
471
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_SByte,A) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
472
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
473
|
|
|
|
|
|
|
PDL_SByte a_, b_; |
|
474
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
475
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
476
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
477
|
0
|
|
|
|
|
|
PDL_SByte ab = 0, sa = 0, sb = 0; |
|
478
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
479
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
480
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,A,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,A,a_badval_isnan)) continue; N++;,) |
|
481
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
482
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
483
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
484
|
|
|
|
|
|
|
}} /* Close n */ |
|
485
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
486
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
487
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
488
|
0
|
|
|
|
|
|
continue; |
|
489
|
|
|
|
|
|
|
} |
|
490
|
0
|
|
|
|
|
|
PDL_SByte cov = ab - (sa * sb) / N; |
|
491
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
492
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
493
|
|
|
|
|
|
|
} |
|
494
|
|
|
|
|
|
|
} |
|
495
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
496
|
0
|
|
|
|
|
|
} break; |
|
497
|
0
|
|
|
|
|
|
case PDL_B: { |
|
498
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Byte,B) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
499
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
500
|
|
|
|
|
|
|
PDL_Byte a_, b_; |
|
501
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
502
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
503
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
504
|
0
|
|
|
|
|
|
PDL_Byte ab = 0, sa = 0, sb = 0; |
|
505
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
506
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
507
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,B,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,B,a_badval_isnan)) continue; N++;,) |
|
508
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
509
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
510
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
511
|
|
|
|
|
|
|
}} /* Close n */ |
|
512
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
513
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
514
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
515
|
0
|
|
|
|
|
|
continue; |
|
516
|
|
|
|
|
|
|
} |
|
517
|
0
|
|
|
|
|
|
PDL_Byte cov = ab - (sa * sb) / N; |
|
518
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
519
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
520
|
|
|
|
|
|
|
} |
|
521
|
|
|
|
|
|
|
} |
|
522
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
523
|
0
|
|
|
|
|
|
} break; |
|
524
|
0
|
|
|
|
|
|
case PDL_S: { |
|
525
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Short,S) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
526
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
527
|
|
|
|
|
|
|
PDL_Short a_, b_; |
|
528
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
529
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
530
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
531
|
0
|
|
|
|
|
|
PDL_Short ab = 0, sa = 0, sb = 0; |
|
532
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
533
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
534
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,S,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,S,a_badval_isnan)) continue; N++;,) |
|
535
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
536
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
537
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
538
|
|
|
|
|
|
|
}} /* Close n */ |
|
539
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
540
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
541
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
542
|
0
|
|
|
|
|
|
continue; |
|
543
|
|
|
|
|
|
|
} |
|
544
|
0
|
|
|
|
|
|
PDL_Short cov = ab - (sa * sb) / N; |
|
545
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
546
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
547
|
|
|
|
|
|
|
} |
|
548
|
|
|
|
|
|
|
} |
|
549
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
550
|
0
|
|
|
|
|
|
} break; |
|
551
|
0
|
|
|
|
|
|
case PDL_US: { |
|
552
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Ushort,U) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
553
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
554
|
|
|
|
|
|
|
PDL_Ushort a_, b_; |
|
555
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
556
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
557
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
558
|
0
|
|
|
|
|
|
PDL_Ushort ab = 0, sa = 0, sb = 0; |
|
559
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
560
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
561
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,U,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,U,a_badval_isnan)) continue; N++;,) |
|
562
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
563
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
564
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
565
|
|
|
|
|
|
|
}} /* Close n */ |
|
566
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
567
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
568
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
569
|
0
|
|
|
|
|
|
continue; |
|
570
|
|
|
|
|
|
|
} |
|
571
|
0
|
|
|
|
|
|
PDL_Ushort cov = ab - (sa * sb) / N; |
|
572
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
573
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
574
|
|
|
|
|
|
|
} |
|
575
|
|
|
|
|
|
|
} |
|
576
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
577
|
0
|
|
|
|
|
|
} break; |
|
578
|
0
|
|
|
|
|
|
case PDL_L: { |
|
579
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Long,L) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
580
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
581
|
|
|
|
|
|
|
PDL_Long a_, b_; |
|
582
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
583
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
584
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
585
|
0
|
|
|
|
|
|
PDL_Long ab = 0, sa = 0, sb = 0; |
|
586
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
587
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
588
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,L,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,L,a_badval_isnan)) continue; N++;,) |
|
589
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
590
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
591
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
592
|
|
|
|
|
|
|
}} /* Close n */ |
|
593
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
594
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
595
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
596
|
0
|
|
|
|
|
|
continue; |
|
597
|
|
|
|
|
|
|
} |
|
598
|
0
|
|
|
|
|
|
PDL_Long cov = ab - (sa * sb) / N; |
|
599
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
600
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
601
|
|
|
|
|
|
|
} |
|
602
|
|
|
|
|
|
|
} |
|
603
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
604
|
0
|
|
|
|
|
|
} break; |
|
605
|
0
|
|
|
|
|
|
case PDL_UL: { |
|
606
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_ULong,K) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
607
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
608
|
|
|
|
|
|
|
PDL_ULong a_, b_; |
|
609
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
610
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
611
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
612
|
0
|
|
|
|
|
|
PDL_ULong ab = 0, sa = 0, sb = 0; |
|
613
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
614
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
615
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,K,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,K,a_badval_isnan)) continue; N++;,) |
|
616
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
617
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
618
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
619
|
|
|
|
|
|
|
}} /* Close n */ |
|
620
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
621
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
622
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
623
|
0
|
|
|
|
|
|
continue; |
|
624
|
|
|
|
|
|
|
} |
|
625
|
0
|
|
|
|
|
|
PDL_ULong cov = ab - (sa * sb) / N; |
|
626
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
627
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
628
|
|
|
|
|
|
|
} |
|
629
|
|
|
|
|
|
|
} |
|
630
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
631
|
0
|
|
|
|
|
|
} break; |
|
632
|
0
|
|
|
|
|
|
case PDL_IND: { |
|
633
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Indx,N) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
634
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
635
|
|
|
|
|
|
|
PDL_Indx a_, b_; |
|
636
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
637
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
638
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
639
|
0
|
|
|
|
|
|
PDL_Indx ab = 0, sa = 0, sb = 0; |
|
640
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
641
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
642
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,N,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,N,a_badval_isnan)) continue; N++;,) |
|
643
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
644
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
645
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
646
|
|
|
|
|
|
|
}} /* Close n */ |
|
647
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
648
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
649
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
650
|
0
|
|
|
|
|
|
continue; |
|
651
|
|
|
|
|
|
|
} |
|
652
|
0
|
|
|
|
|
|
PDL_Indx cov = ab - (sa * sb) / N; |
|
653
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
654
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
655
|
|
|
|
|
|
|
} |
|
656
|
|
|
|
|
|
|
} |
|
657
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
658
|
0
|
|
|
|
|
|
} break; |
|
659
|
0
|
|
|
|
|
|
case PDL_ULL: { |
|
660
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_ULongLong,P) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
661
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
662
|
|
|
|
|
|
|
PDL_ULongLong a_, b_; |
|
663
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
664
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
665
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
666
|
0
|
|
|
|
|
|
PDL_ULongLong ab = 0, sa = 0, sb = 0; |
|
667
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
668
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
669
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,P,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,P,a_badval_isnan)) continue; N++;,) |
|
670
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
671
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
672
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
673
|
|
|
|
|
|
|
}} /* Close n */ |
|
674
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
675
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
676
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
677
|
0
|
|
|
|
|
|
continue; |
|
678
|
|
|
|
|
|
|
} |
|
679
|
0
|
|
|
|
|
|
PDL_ULongLong cov = ab - (sa * sb) / N; |
|
680
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
681
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
682
|
|
|
|
|
|
|
} |
|
683
|
|
|
|
|
|
|
} |
|
684
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
685
|
0
|
|
|
|
|
|
} break; |
|
686
|
0
|
|
|
|
|
|
case PDL_LL: { |
|
687
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_LongLong,Q) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
688
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
689
|
|
|
|
|
|
|
PDL_LongLong a_, b_; |
|
690
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
691
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
692
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
693
|
0
|
|
|
|
|
|
PDL_LongLong ab = 0, sa = 0, sb = 0; |
|
694
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
695
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
696
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,Q,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,Q,a_badval_isnan)) continue; N++;,) |
|
697
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
698
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
699
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
700
|
|
|
|
|
|
|
}} /* Close n */ |
|
701
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
702
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
703
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
704
|
0
|
|
|
|
|
|
continue; |
|
705
|
|
|
|
|
|
|
} |
|
706
|
0
|
|
|
|
|
|
PDL_LongLong cov = ab - (sa * sb) / N; |
|
707
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
708
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
709
|
|
|
|
|
|
|
} |
|
710
|
|
|
|
|
|
|
} |
|
711
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
712
|
0
|
|
|
|
|
|
} break; |
|
713
|
0
|
|
|
|
|
|
case PDL_F: { |
|
714
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Float,F) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
715
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
716
|
|
|
|
|
|
|
PDL_Float a_, b_; |
|
717
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
718
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
719
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
720
|
0
|
|
|
|
|
|
PDL_Float ab = 0, sa = 0, sb = 0; |
|
721
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
722
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
723
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,F,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,F,a_badval_isnan)) continue; N++;,) |
|
724
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
725
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
726
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
727
|
|
|
|
|
|
|
}} /* Close n */ |
|
728
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
729
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
730
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
731
|
0
|
|
|
|
|
|
continue; |
|
732
|
|
|
|
|
|
|
} |
|
733
|
0
|
|
|
|
|
|
PDL_Float cov = ab - (sa * sb) / N; |
|
734
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
735
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
736
|
|
|
|
|
|
|
} |
|
737
|
|
|
|
|
|
|
} |
|
738
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
739
|
0
|
|
|
|
|
|
} break; |
|
740
|
2
|
|
|
|
|
|
case PDL_D: { |
|
741
|
2
|
50
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_Double,D) |
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
742
|
8
|
50
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
100
|
|
|
|
|
|
|
|
|
100
|
|
|
|
|
|
|
743
|
|
|
|
|
|
|
PDL_Double a_, b_; |
|
744
|
2
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
745
|
8
|
100
|
|
|
|
|
for (i=0; i
|
|
746
|
18
|
100
|
|
|
|
|
for (j=i; j
|
|
747
|
12
|
|
|
|
|
|
PDL_Double ab = 0, sa = 0, sb = 0; |
|
748
|
12
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
749
|
102
|
100
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
750
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,D,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,D,a_badval_isnan)) continue; N++;,) |
|
751
|
90
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
752
|
90
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
753
|
90
|
|
|
|
|
|
ab += a_ * b_; |
|
754
|
|
|
|
|
|
|
}} /* Close n */ |
|
755
|
12
|
50
|
|
|
|
|
if (N < 2) { |
|
756
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
757
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
758
|
0
|
|
|
|
|
|
continue; |
|
759
|
|
|
|
|
|
|
} |
|
760
|
12
|
|
|
|
|
|
PDL_Double cov = ab - (sa * sb) / N; |
|
761
|
12
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
762
|
12
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
763
|
|
|
|
|
|
|
} |
|
764
|
|
|
|
|
|
|
} |
|
765
|
2
|
50
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
50
|
|
|
|
|
|
|
766
|
2
|
|
|
|
|
|
} break; |
|
767
|
0
|
|
|
|
|
|
case PDL_LD: { |
|
768
|
0
|
0
|
|
|
|
|
PDL_DECLARE_PARAMS_cov_table_1(PDL_LDouble,E) |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
769
|
0
|
0
|
|
|
|
|
PDL_BROADCASTLOOP_START_cov_table_readdata { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
770
|
|
|
|
|
|
|
PDL_LDouble a_, b_; |
|
771
|
0
|
|
|
|
|
|
PDL_Indx M = __privtrans->ind_sizes[0], i, j; |
|
772
|
0
|
0
|
|
|
|
|
for (i=0; i
|
|
773
|
0
|
0
|
|
|
|
|
for (j=i; j
|
|
774
|
0
|
|
|
|
|
|
PDL_LDouble ab = 0, sa = 0, sb = 0; |
|
775
|
0
|
|
|
|
|
|
PDL_Indx N = PDL_IF_BAD(0,__privtrans->ind_sizes[1]); |
|
776
|
0
|
0
|
|
|
|
|
{/* Open n */ PDL_EXPAND2(register PDL_Indx n=0, __n_stop=(__n_size)); for(; n<__n_stop; n+=1) { |
|
777
|
|
|
|
|
|
|
PDL_IF_BAD(if (PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))],a_badval,E,a_badval_isnan) || PDL_ISBAD2((a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))],a_badval,E,a_badval_isnan)) continue; N++;,) |
|
778
|
0
|
|
|
|
|
|
sa += a_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(i))]; |
|
779
|
0
|
|
|
|
|
|
sb += b_ = (a_datap)[0+(__inc_a_n*(n))+(__inc_a_m*(j))]; |
|
780
|
0
|
|
|
|
|
|
ab += a_ * b_; |
|
781
|
|
|
|
|
|
|
}} /* Close n */ |
|
782
|
0
|
0
|
|
|
|
|
if (N < 2) { |
|
783
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))]=c_badval; |
|
784
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))]=c_badval; |
|
785
|
0
|
|
|
|
|
|
continue; |
|
786
|
|
|
|
|
|
|
} |
|
787
|
0
|
|
|
|
|
|
PDL_LDouble cov = ab - (sa * sb) / N; |
|
788
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(i))+(__inc_c_m1*(j))] = |
|
789
|
0
|
|
|
|
|
|
(c_datap)[0+(__inc_c_m0*(j))+(__inc_c_m1*(i))] = cov / N; |
|
790
|
|
|
|
|
|
|
} |
|
791
|
|
|
|
|
|
|
} |
|
792
|
0
|
0
|
|
|
|
|
}PDL_BROADCASTLOOP_END_cov_table_readdata |
|
|
|
0
|
|
|
|
|
|
|
793
|
0
|
|
|
|
|
|
} break; |
|
794
|
0
|
|
|
|
|
|
default: return PDL->make_error(PDL_EUSERERROR, "PP INTERNAL ERROR in cov_table: unhandled datatype(%d), only handles (ABSULKNPQFDE)! PLEASE MAKE A BUG REPORT\n", __privtrans->__datatype); |
|
795
|
|
|
|
|
|
|
} |
|
796
|
|
|
|
|
|
|
#undef PDL_IF_BAD |
|
797
|
|
|
|
|
|
|
} |
|
798
|
3
|
|
|
|
|
|
return PDL_err; |
|
799
|
|
|
|
|
|
|
} |
|
800
|
|
|
|
|
|
|
|
|
801
|
|
|
|
|
|
|
static pdl_datatypes pdl_cov_table_vtable_gentypes[] = { PDL_SB, PDL_B, PDL_S, PDL_US, PDL_L, PDL_UL, PDL_IND, PDL_ULL, PDL_LL, PDL_F, PDL_D, PDL_LD, -1 }; |
|
802
|
|
|
|
|
|
|
static PDL_Indx pdl_cov_table_vtable_realdims[] = { 2, 2 }; |
|
803
|
|
|
|
|
|
|
static char *pdl_cov_table_vtable_parnames[] = { "a","c" }; |
|
804
|
|
|
|
|
|
|
static short pdl_cov_table_vtable_parflags[] = { |
|
805
|
|
|
|
|
|
|
0, |
|
806
|
|
|
|
|
|
|
PDL_PARAM_ISCREAT|PDL_PARAM_ISOUT|PDL_PARAM_ISWRITE |
|
807
|
|
|
|
|
|
|
}; |
|
808
|
|
|
|
|
|
|
static pdl_datatypes pdl_cov_table_vtable_partypes[] = { -1, -1 }; |
|
809
|
|
|
|
|
|
|
static PDL_Indx pdl_cov_table_vtable_realdims_starts[] = { 0, 2 }; |
|
810
|
|
|
|
|
|
|
static PDL_Indx pdl_cov_table_vtable_realdims_ind_ids[] = { 1, 0, 0, 0 }; |
|
811
|
|
|
|
|
|
|
static char *pdl_cov_table_vtable_indnames[] = { "m","n" }; |
|
812
|
|
|
|
|
|
|
pdl_transvtable pdl_cov_table_vtable = { |
|
813
|
|
|
|
|
|
|
PDL_TRANS_DO_BROADCAST|PDL_TRANS_BADPROCESS, 0, pdl_cov_table_vtable_gentypes, 1, 2, NULL /*CORE21*/, |
|
814
|
|
|
|
|
|
|
pdl_cov_table_vtable_realdims, pdl_cov_table_vtable_parnames, |
|
815
|
|
|
|
|
|
|
pdl_cov_table_vtable_parflags, pdl_cov_table_vtable_partypes, |
|
816
|
|
|
|
|
|
|
pdl_cov_table_vtable_realdims_starts, pdl_cov_table_vtable_realdims_ind_ids, 4, |
|
817
|
|
|
|
|
|
|
2, pdl_cov_table_vtable_indnames, |
|
818
|
|
|
|
|
|
|
pdl_cov_table_redodims, pdl_cov_table_readdata, NULL, |
|
819
|
|
|
|
|
|
|
NULL, |
|
820
|
|
|
|
|
|
|
0,"PDL::Stats::Basic::cov_table" |
|
821
|
|
|
|
|
|
|
}; |
|
822
|
|
|
|
|
|
|
|
|
823
|
|
|
|
|
|
|
|
|
824
|
3
|
|
|
|
|
|
pdl_error pdl_run_cov_table(pdl *a,pdl *c) { |
|
825
|
3
|
|
|
|
|
|
pdl_error PDL_err = {0, NULL, 0}; |
|
826
|
3
|
50
|
|
|
|
|
if (!PDL) return (pdl_error){PDL_EFATAL, "PDL core struct is NULL, can't continue",0}; |
|
827
|
3
|
|
|
|
|
|
pdl_trans *__privtrans = PDL->create_trans(&pdl_cov_table_vtable); |
|
828
|
3
|
50
|
|
|
|
|
if (!__privtrans) return PDL->make_error_simple(PDL_EFATAL, "Couldn't create trans"); |
|
829
|
3
|
|
|
|
|
|
__privtrans->pdls[0] = a; |
|
830
|
3
|
|
|
|
|
|
__privtrans->pdls[1] = c; |
|
831
|
3
|
50
|
|
|
|
|
PDL_RETERROR(PDL_err, PDL->type_coerce(__privtrans)); |
|
832
|
3
|
50
|
|
|
|
|
PDL_RETERROR(PDL_err, PDL->make_trans_mutual(__privtrans)); |
|
833
|
3
|
|
|
|
|
|
return PDL_err; |
|
834
|
|
|
|
|
|
|
} |