|  line  | 
 stmt  | 
 bran  | 
 cond  | 
 sub  | 
 pod  | 
 time  | 
 code  | 
| 
1
 | 
  
 
  
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 package PDL::IO::CSV;  | 
| 
2
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 | 
 
 | 
    | 
| 
3
 | 
3
 | 
 
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 | 
  
3
  
 | 
 
 | 
374742
 | 
 use strict;  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
73
 | 
    | 
| 
4
 | 
3
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 | 
  
3
  
 | 
 
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9
 | 
 use warnings;  | 
| 
 
 | 
3
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4
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    | 
| 
 
 | 
3
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206
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    | 
| 
5
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    | 
| 
6
 | 
 
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 | 
 require Exporter;  | 
| 
7
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 our @ISA = qw(Exporter);  | 
| 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 our @EXPORT_OK   = qw(rcsv1D rcsv2D wcsv1D wcsv2D);  | 
| 
9
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 our %EXPORT_TAGS = (all => \@EXPORT_OK);  | 
| 
10
 | 
 
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 | 
 
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 | 
 
 | 
 
 | 
    | 
| 
11
 | 
 
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 our $VERSION = '0.009';  | 
| 
12
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 | 
 
 | 
 
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 | 
 
 | 
 
 | 
    | 
| 
13
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
12
 | 
 use Config;  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
174
 | 
    | 
| 
14
 | 
3
 | 
  
 50
  
 | 
 
 | 
  
3
  
 | 
 
 | 
11
 | 
 use constant NO64BITINT => ($Config{ivsize} < 8) ? 1 : 0;  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
468
 | 
    | 
| 
15
 | 
3
 | 
  
 50
  
 | 
 
 | 
  
3
  
 | 
 
 | 
11
 | 
 use constant NODATETIME => eval { require PDL::DateTime; require Time::Moment; 1 } ? 0 : 1;  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
690
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
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 | 
 
 | 
 
 | 
0
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
16
 | 
3
 | 
  
 50
  
 | 
 
 | 
  
3
  
 | 
 
 | 
11
 | 
 use constant DEBUG      => $ENV{PDL_IO_CSV_DEBUG} ? 1 : 0;  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
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 | 
 
 | 
 
 | 
138
 | 
    | 
| 
17
 | 
 
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 | 
 
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    | 
| 
18
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
511
 | 
 use PDL;  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
17
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
12
 | 
    | 
| 
19
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
165599
 | 
 use Text::CSV_XS;  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
21600
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
152
 | 
    | 
| 
20
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
18
 | 
 use Scalar::Util qw(looks_like_number openhandle blessed);  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
195
 | 
    | 
| 
21
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
1362
 | 
 use POSIX qw();  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
11727
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
61
 | 
    | 
| 
22
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
1364
 | 
 use Time::Piece;  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
20318
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
13
 | 
    | 
| 
23
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
24
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
175
 | 
 use Carp;  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
192
 | 
    | 
| 
25
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 $Carp::Internal{ (__PACKAGE__) }++;  | 
| 
26
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
27
 | 
 
 | 
 
 | 
 
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 | 
 
 | 
 sub import {  | 
| 
28
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
29
 | 
   my $package = shift;  | 
| 
29
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   {  | 
| 
30
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
12
 | 
     no strict 'refs';  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4113
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
31
 | 
3
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
8
 | 
     *{'PDL::wcsv2D'} = \&wcsv2D if grep { /^(:all|wcsv2D)$/ } @_;  | 
| 
 
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
10
 | 
    | 
| 
 
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
17
 | 
    | 
| 
32
 | 
3
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
6
 | 
     *{'PDL::wcsv1D'} = \&wcsv1D if grep { /^(:all|wcsv1D)$/ } @_;  | 
| 
 
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
18
 | 
    | 
| 
 
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
8
 | 
    | 
| 
33
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
34
 | 
3
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
298
 | 
   __PACKAGE__->export_to_level(1, $package, @_) if @_;  | 
| 
35
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
36
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
37
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 my %pck = (  | 
| 
38
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   byte     => "C",  | 
| 
39
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   short    => "s",  | 
| 
40
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   ushort   => "S",  | 
| 
41
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   long     => "l",  | 
| 
42
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   longlong => "q",  | 
| 
43
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   float    => "f",  | 
| 
44
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   double   => "d",  | 
| 
45
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 );  | 
| 
46
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
47
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub wcsv1D {  | 
| 
48
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
  
1
  
 | 
0
 | 
   my ($fh, $O, $C) = _proc_wargs('1D', @_);  | 
| 
49
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
50
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $cols = 0;  | 
| 
51
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $rows = 0;  | 
| 
52
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_pdl;  | 
| 
53
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   my @c_rows;  | 
| 
54
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_type;  | 
| 
55
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_size;  | 
| 
56
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_pack;  | 
| 
57
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_dataref;  | 
| 
58
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_offset;  | 
| 
59
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_max_offset;  | 
| 
60
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_bad;  | 
| 
61
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
62
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $bad2empty = $O->{bad2empty};  | 
| 
63
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
64
 | 
  
0
  
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
   while (blessed $_[0] && $_[0]->isa('PDL')) {  | 
| 
65
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_pdl[$cols] = shift;  | 
| 
66
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     croak "FATAL: wcsv1D() expects 1D piddles" unless $c_pdl[$cols]->ndims == 1;  | 
| 
67
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_size[$cols]       = PDL::Core::howbig($c_pdl[$cols]->get_datatype);  | 
| 
68
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_dataref[$cols]    = $c_pdl[$cols]->get_dataref;  | 
| 
69
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_offset[$cols]     = 0;  | 
| 
70
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     my $type             = $c_pdl[$cols]->type;  | 
| 
71
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     my $dim              = $c_pdl[$cols]->dim(0);  | 
| 
72
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_pack[$cols]       = $pck{$type};  | 
| 
73
 | 
  
0
  
 | 
  
  0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
     croak "FATAL: your perl does not support 64bitint (avoid using type longlong)" if $c_pack[$cols] eq 'q' && NO64BITINT;  | 
| 
74
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_max_offset[$cols] = $c_size[$cols] * $dim;  | 
| 
75
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $rows = $dim if $rows < $dim;  | 
| 
76
 | 
  
0
  
 | 
  
  0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
     if ($bad2empty && $c_pdl[$cols]->check_badflag) {  | 
| 
77
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       my $b = pdl($type, 1)->setbadif(1);  | 
| 
78
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       my $d = $b->get_dataref;  | 
| 
79
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $c_bad[$cols] = substr($$d, 0, $c_size[$cols]); # raw bytes representind BAD value  | 
| 
80
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
81
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $cols++;  | 
| 
82
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
83
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
84
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $csv = Text::CSV_XS->new($C) or croak "" . Text::CSV_XS->error_diag();  | 
| 
85
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   if ($O->{header}) {  | 
| 
86
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     my $count = scalar @{$O->{header}};  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
87
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     croak "FATAL: wrong header (expected $cols items, got $count)" if $cols != $count;  | 
| 
88
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $csv->print($fh, $O->{header});  | 
| 
89
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
90
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   for my $r (0..$rows-1) {  | 
| 
91
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     my @v = ('') x $cols;  | 
| 
92
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     for my $c (0..$cols-1) {  | 
| 
93
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       if ($c_max_offset[$c] >= $c_offset[$c]) {  | 
| 
94
 | 
  
0
  
 | 
  
  0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
         if ($bad2empty && $c_bad[$c]) {  | 
| 
95
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           my $v = substr(${$c_dataref[$c]}, $c_offset[$c], $c_size[$c]);  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
96
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           if ($v ne $c_bad[$c]) {  | 
| 
97
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             $v[$c] = unpack($c_pack[$c], $v);  | 
| 
98
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             $v[$c] = PDL::DateTime::ll2dt($v[$c]) if ref $c_pdl[$c] eq 'PDL::DateTime';  | 
| 
99
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
100
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
101
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         else {  | 
| 
102
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           my $v = substr(${$c_dataref[$c]}, $c_offset[$c], $c_size[$c]);  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
103
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           $v[$c] = unpack($c_pack[$c], $v);  | 
| 
104
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           $v[$c] = PDL::DateTime::ll2dt($v[$c]) if ref $c_pdl[$c] eq 'PDL::DateTime';  | 
| 
105
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
106
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       }  | 
| 
107
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $c_offset[$c] += $c_size[$c];  | 
| 
108
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
109
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $csv->print($fh, \@v);  | 
| 
110
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
111
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   #XXX close $fh;  | 
| 
112
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
113
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
114
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub wcsv2D {  | 
| 
115
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
  
1
  
 | 
0
 | 
   my $pdl = shift;  | 
| 
116
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my ($fh, $O, $C) = _proc_wargs('2D', @_);  | 
| 
117
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
118
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   croak "FATAL: wcsv2D() expects 2D piddle" unless $pdl->ndims == 2;  | 
| 
119
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $p = $pdl->transpose;  | 
| 
120
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
121
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my ($cols, $rows) = $p->dims;  | 
| 
122
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $type = $p->type;  | 
| 
123
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $size = PDL::Core::howbig($p->get_datatype);  | 
| 
124
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $packC = $pck{$type} . "[$cols]";  | 
| 
125
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $pack1 = $pck{$type};  | 
| 
126
 | 
  
0
  
 | 
  
  0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
   croak "FATAL: your perl does not support 64bitint (avoid using type longlong)" if $pck{$type} eq 'q' && NO64BITINT;  | 
| 
127
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $dataref = $p->get_dataref;  | 
| 
128
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $offset = 0;  | 
| 
129
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $colsize = $size * $cols;  | 
| 
130
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $max_offset = $colsize * ($rows - 1);  | 
| 
131
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $bad;  | 
| 
132
 | 
  
0
  
 | 
  
  0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
   if ($O->{bad2empty} && $p->check_badflag) {  | 
| 
133
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     my $b = pdl($type, 1)->setbadif(1);  | 
| 
134
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     my $d = $b->get_dataref;  | 
| 
135
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $bad = substr($$d, 0, $size); # raw bytes representind BAD value  | 
| 
136
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
137
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
138
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $csv = Text::CSV_XS->new($C) or croak "" . Text::CSV_XS->error_diag();  | 
| 
139
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   if ($O->{header}) {  | 
| 
140
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     my $n = scalar @{$O->{header}};  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
141
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     croak "FATAL: wrong header (expected $cols items, got $n)" if $cols != $n;  | 
| 
142
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $csv->print($fh, $O->{header});  | 
| 
143
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
144
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   while ($offset <= $max_offset) {  | 
| 
145
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     if (defined $bad) {  | 
| 
146
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       my @v = map { my $v = substr($$dataref, $offset + $_*$size, $size); $v eq $bad ? '' : unpack($pack1, $v) } (0..$cols-1);  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
147
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $csv->print($fh, \@v);  | 
| 
148
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
149
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     else {  | 
| 
150
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       my @v = unpack($packC, substr($$dataref, $offset, $colsize));  | 
| 
151
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $csv->print($fh, \@v);  | 
| 
152
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
153
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $offset += $colsize;  | 
| 
154
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
155
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   #XXX close $fh;  | 
| 
156
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
157
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
158
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub rcsv1D {  | 
| 
159
 | 
2
 | 
 
 | 
 
 | 
  
2
  
 | 
  
1
  
 | 
978
 | 
   my ($fh, $coli, $O, $C) = _proc_rargs('1D', @_);  | 
| 
160
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
161
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   my ($c_type, $c_pack, $c_sizeof, $c_pdl, $c_bad, $c_dataref, $c_idx, $c_dt, $allocated, $cols); # initialize after we get 1st line  | 
| 
162
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
163
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
15
 | 
   my $csv = Text::CSV_XS->new($C) or croak "" . Text::CSV_XS->error_diag();  | 
| 
164
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
183
 | 
   my $processed = 0;  | 
| 
165
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   my $finished = 0;  | 
| 
166
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
   my $chunk = $O->{fetch_chunk};  | 
| 
167
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
11
 | 
   my $empty2bad = $O->{empty2bad};  | 
| 
168
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
   my $text2bad  = $O->{text2bad};  | 
| 
169
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
   my $dec_comma = $O->{decimal_comma};  | 
| 
170
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
171
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
8
 | 
   warn "Fetching 1D " . _dbg_msg($O, $C) . "\n" if $O->{debug};  | 
| 
172
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   # skip headers  | 
| 
173
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   my $headerline;  | 
| 
174
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   my $headerdetection;  | 
| 
175
 | 
2
 | 
  
 50
  
 | 
  
 33
  
 | 
 
 | 
 
 | 
27
 | 
   if (looks_like_number($O->{header})) {  | 
| 
 
 | 
 
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
176
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     if ($O->{header} == 1) {  | 
| 
177
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       # get the header line (only if skipping exactly 1 line)  | 
| 
178
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $headerline = $csv->getline($fh);  | 
| 
179
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
180
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     else {  | 
| 
181
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $csv->getline($fh) for (1..$O->{header});  | 
| 
182
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
183
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
184
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   elsif ($O->{header} && $O->{header} eq 'auto') {  | 
| 
185
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
     $headerdetection = 1;  | 
| 
186
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
187
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
188
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
   while (!$finished) {  | 
| 
189
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
     my $rows = 0;  | 
| 
190
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
22
 | 
     my @bytes;  | 
| 
191
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     my $r;  | 
| 
192
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9
 | 
     while ($rows < $chunk) {  | 
| 
193
 | 
3
 | 
 
 | 
 
 | 
  
1
  
 | 
 
 | 
93
 | 
       my $r = $csv->getline($fh);  | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
    | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
    | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
37
 | 
    | 
| 
194
 | 
3
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
84
 | 
       if (defined $r) {  | 
| 
195
 | 
3
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
6
 | 
         if (defined $headerdetection) {  | 
| 
196
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
           my $numeric = 0;  | 
| 
197
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
           for (@$r) {  | 
| 
198
 | 
11
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
22
 | 
             if (looks_like_number($_)) {  | 
| 
199
 | 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
8
 | 
               $numeric++;  | 
| 
200
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
201
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             elsif (!NODATETIME) {  | 
| 
202
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
               my $v = $O->{strptime} ? _strptime($_, $O->{strptime}) : PDL::DateTime::dt2ll($_);  | 
| 
203
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
               $numeric++ if defined $v;  | 
| 
204
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
205
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
206
 | 
3
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
7
 | 
           if ($numeric == 0) {  | 
| 
207
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             # no numeric values found => skip this line but keep it as a potential header  | 
| 
208
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
1
 | 
             $headerline = $r;  | 
| 
209
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
             next;  | 
| 
210
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
211
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
           $headerdetection = undef;  | 
| 
212
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
213
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
9
 | 
         unless (defined $c_type) {  | 
| 
214
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
8
 | 
           ($c_type, $c_pack, $c_sizeof, $c_pdl, $c_bad, $c_dataref, $c_idx, $c_dt, $allocated, $cols) = _init_1D($coli, $r, $O);  | 
| 
215
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           warn "Initialized size=$allocated, cols=$cols, type=".join(",",@$c_type)."\n" if $O->{debug};  | 
| 
216
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
217
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         if ($dec_comma) {  | 
| 
218
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           for (@$r) { s/,/./ if defined $_ };  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
219
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
220
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         if ($empty2bad) {  | 
| 
221
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           if (defined $coli) {  | 
| 
222
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             for (0..$cols-1) {  | 
| 
223
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               my $i = $coli->[$_];  | 
| 
224
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               unless (defined $r->[$i]) { $r->[$i] = $c_bad->[$_]; $c_pdl->[$_]->badflag(1) }  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
225
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
226
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
227
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           else {  | 
| 
228
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             for (0..$cols-1) {  | 
| 
229
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               unless (defined $r->[$_]) { $r->[$_] = $c_bad->[$_]; $c_pdl->[$_]->badflag(1) }  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
230
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
231
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
232
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
233
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         if (defined $c_dt) {  | 
| 
234
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           for (0..$cols-1) {  | 
| 
235
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             next unless defined $c_dt->[$_];  | 
| 
236
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             my $v = $c_dt->[$_] ne 'datetime' ? _strptime($r->[$_], $c_dt->[$_]) : PDL::DateTime::dt2ll($r->[$_]);  | 
| 
237
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             if (defined $v) {  | 
| 
238
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               $r->[$_] = $v;  | 
| 
239
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
240
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             else {  | 
| 
241
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               $r->[$_] = $c_bad->[$_];  | 
| 
242
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               $c_pdl->[$_]->badflag(1);  | 
| 
243
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
244
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
245
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
246
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         if ($text2bad) {  | 
| 
247
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           if (defined $coli) {  | 
| 
248
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             for (0..$cols-1) {  | 
| 
249
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               my $i = $coli->[$_];  | 
| 
250
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               unless (looks_like_number($r->[$i])) { $r->[$i] = $c_bad->[$_]; $c_pdl->[$_]->badflag(1) }  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
251
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
252
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
253
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           else {  | 
| 
254
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             for (0..$cols-1) {  | 
| 
255
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               unless (looks_like_number($r->[$_])) { $r->[$_] = $c_bad->[$_]; $c_pdl->[$_]->badflag(1) }  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
256
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
257
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
258
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
259
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         if (defined $coli) { # only selected columns  | 
| 
260
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
16
 | 
           no warnings 'pack'; # intentionally disable all pack related warnings  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
108
 | 
    | 
| 
261
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
10
 | 
           no warnings 'numeric'; # disable: Argument ??? isn't numeric in pack  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
125
 | 
    | 
| 
262
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
15
 | 
           no warnings 'uninitialized'; # disable: Use of uninitialized value in pack  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
142
 | 
    | 
| 
263
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           $bytes[$_] .= pack($c_pack->[$_], $r->[$coli->[$_]]) for (0..$cols-1);  | 
| 
264
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
265
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         else { # all columns  | 
| 
266
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
10
 | 
           no warnings 'pack'; # intentionally disable all pack related warnings  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
69
 | 
    | 
| 
267
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
9
 | 
           no warnings 'numeric'; # disable: Argument ??? isn't numeric in pack  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
55
 | 
    | 
| 
268
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
9
 | 
           no warnings 'uninitialized'; # disable: Use of uninitialized value in pack  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2004
 | 
    | 
| 
269
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           $bytes[$_] .= pack($c_pack->[$_], $r->[$_]) for (0..$cols-1);  | 
| 
270
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
271
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         $rows++;  | 
| 
272
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       }  | 
| 
273
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       else {  | 
| 
274
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         $finished = 1;  | 
| 
275
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         last;  | 
| 
276
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       }  | 
| 
277
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
278
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     if ($rows > 0) {  | 
| 
279
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $processed += $rows;  | 
| 
280
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       if ($allocated < $processed) {  | 
| 
281
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         $allocated += $O->{reshape_inc};  | 
| 
282
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         warn "Reshape to: '$allocated'\n" if $O->{debug};  | 
| 
283
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         for (0..$cols-1) {  | 
| 
284
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           $c_pdl->[$_]->reshape($allocated);  | 
| 
285
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           $c_dataref->[$_] = $c_pdl->[$_]->get_dataref;  | 
| 
286
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
287
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       }  | 
| 
288
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       for my $ci (0..$cols-1) {  | 
| 
289
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         my $len = length $bytes[$ci];  | 
| 
290
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         my $expected_len = $c_sizeof->[$ci] * $rows;  | 
| 
291
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         croak "FATAL: len mismatch $len != $expected_len" if $len != $expected_len;  | 
| 
292
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         substr(${$c_dataref->[$ci]}, $c_idx->[$ci], $len) = $bytes[$ci];  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
293
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         $c_idx->[$ci] += $expected_len;  | 
| 
294
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       }  | 
| 
295
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
296
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
297
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
298
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   #XXX close $fh;  | 
| 
299
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   if (ref $c_pdl eq 'ARRAY') {  | 
| 
300
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     if ($processed != $allocated) {  | 
| 
301
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       warn "Reshape to: '$processed' (final)\n" if $O->{debug};  | 
| 
302
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $c_pdl->[$_]->reshape($processed) for (0..$cols-1);  | 
| 
303
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
304
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_pdl->[$_]->upd_data for (0..$cols-1);  | 
| 
305
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     if (ref $headerline eq 'ARRAY') {  | 
| 
306
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       for (0..$cols-1) {  | 
| 
307
 | 
  
0
  
 | 
  
  0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
         $c_pdl->[$_]->hdr->{col_name} = $headerline->[$_] if $headerline->[$_] && $headerline->[$_] ne '';  | 
| 
308
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       };  | 
| 
309
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
310
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     return @$c_pdl;  | 
| 
311
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
312
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
313
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   warn "rcsv1D: no data\n";  | 
| 
314
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   return undef;  | 
| 
315
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
316
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
317
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub rcsv2D {  | 
| 
318
 | 
2
 | 
 
 | 
 
 | 
  
2
  
 | 
  
1
  
 | 
80
 | 
   my ($fh, $coli, $O, $C) = _proc_rargs('2D', @_);  | 
| 
319
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
320
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
   my ($c_type, $c_pack, $c_sizeof, $c_pdl, $c_bad, $c_dataref, $allocated, $cols);  | 
| 
321
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
322
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
15
 | 
   my $csv = Text::CSV_XS->new($C) or croak "" . Text::CSV_XS->error_diag();  | 
| 
323
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
178
 | 
   my $processed = 0;  | 
| 
324
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
   my $c_idx = 0;  | 
| 
325
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
   my $finished;  | 
| 
326
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   my $pck;  | 
| 
327
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   my $chunk = $O->{fetch_chunk};  | 
| 
328
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
   my $empty2bad = $O->{empty2bad};  | 
| 
329
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   my $text2bad  = $O->{text2bad};  | 
| 
330
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
1
 | 
   my $dec_comma = $O->{decimal_comma};  | 
| 
331
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   my $bcount = 0;  | 
| 
332
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
333
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   warn "Fetching 2D " . _dbg_msg($O, $C) . "\n" if $O->{debug};  | 
| 
334
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   # skip headers  | 
| 
335
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
   $csv->getline($fh) for (1..$O->{header});  | 
| 
336
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
   while (!$finished) {  | 
| 
337
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
1
 | 
     my $bytes = '';  | 
| 
338
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
     my $rows = 0;  | 
| 
339
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
7
 | 
     while ($rows < $chunk) {  | 
| 
340
 | 
1
 | 
 
 | 
 
 | 
  
1
  
 | 
 
 | 
6
 | 
       my $r = $csv->getline($fh);  | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
1
 | 
    | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
35
 | 
    | 
| 
 
 | 
12
 | 
 
 | 
 
 | 
 
 | 
 
 | 
236
 | 
    | 
| 
341
 | 
12
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
314
 | 
       if (defined $r) {  | 
| 
342
 | 
10
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
18
 | 
         unless (defined $pck) {  | 
| 
343
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
           ($c_type, $c_pack, $c_sizeof, $c_pdl, $c_bad, $c_dataref, $allocated, $cols) = _init_2D($coli, scalar @$r, $O);  | 
| 
344
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
7
 | 
           warn "Initialized size=$allocated, cols=$cols, type=$c_type\n" if $O->{debug};  | 
| 
345
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
           $pck = "$c_pack\[$cols\]";  | 
| 
346
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
5
 | 
           next if $O->{header};  | 
| 
347
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
348
 | 
10
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
14
 | 
         if ($dec_comma) {  | 
| 
349
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           for (@$r) { s/,/./ if defined $_ };  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
350
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
351
 | 
10
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
12
 | 
         if ($empty2bad) {  | 
| 
352
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           if (defined $coli) {  | 
| 
353
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             for (0..$cols-1) {  | 
| 
354
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               my $i = $coli->[$_];  | 
| 
355
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               unless (defined $r->[$i]) { $r->[$i] = $c_bad; $c_pdl->badflag(1) }  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
356
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
357
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
358
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           else {  | 
| 
359
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             for (0..$cols-1) {  | 
| 
360
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               unless (defined $r->[$_]) { $r->[$_] = $c_bad; $c_pdl->badflag(1) }  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
361
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
362
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
363
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
364
 | 
10
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
11
 | 
         if ($text2bad) {  | 
| 
365
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           if (defined $coli) {  | 
| 
366
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             for (0..$cols-1) {  | 
| 
367
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               my $i = $coli->[$_];  | 
| 
368
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               unless (looks_like_number($r->[$i])) { $r->[$i] = $c_bad; $c_pdl->badflag(1) }  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
369
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
370
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
371
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           else {  | 
| 
372
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
             for (0..$cols-1) {  | 
| 
373
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
               unless (looks_like_number($r->[$_])) { $r->[$_] = $c_bad; $c_pdl->badflag(1) }  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
374
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             }  | 
| 
375
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
           }  | 
| 
376
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
377
 | 
10
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
10
 | 
         if (defined $coli) { # only selected columns  | 
| 
378
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
17
 | 
           no warnings 'pack'; # intentionally disable all pack related warnings  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
117
 | 
    | 
| 
379
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
13
 | 
           no warnings 'numeric'; # disable: Argument ??? isn't numeric in pack  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
79
 | 
    | 
| 
380
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
13
 | 
           no warnings 'uninitialized'; # disable: Use of uninitialized value in pack  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
131
 | 
    | 
| 
381
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           $bytes .= pack($pck, map { $r->[$_] } @$coli);  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
382
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
383
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         else { # all columns  | 
| 
384
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
10
 | 
           no warnings 'pack'; # intentionally disable all pack related warnings  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
74
 | 
    | 
| 
385
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
9
 | 
           no warnings 'numeric'; # disable: Argument ??? isn't numeric in pack  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
60
 | 
    | 
| 
386
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
8
 | 
           no warnings 'uninitialized'; # disable: Use of uninitialized value in pack  | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
    | 
| 
 
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4471
 | 
    | 
| 
387
 | 
10
 | 
 
 | 
 
 | 
 
 | 
 
 | 
46
 | 
           $bytes .= pack($pck, @$r);  | 
| 
388
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
389
 | 
10
 | 
 
 | 
 
 | 
 
 | 
 
 | 
17
 | 
         $rows++;  | 
| 
390
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       }  | 
| 
391
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       else {  | 
| 
392
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
         $finished = 1;  | 
| 
393
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
         last;  | 
| 
394
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       }  | 
| 
395
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
396
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
5
 | 
     if ($rows > 0) {  | 
| 
397
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
       $processed += $rows;  | 
| 
398
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
5
 | 
       if ($allocated < $processed) {  | 
| 
399
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         $allocated += $O->{reshape_inc};  | 
| 
400
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         warn "Reshaping to $allocated\n" if $O->{debug};  | 
| 
401
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         $c_pdl->reshape($cols, $allocated);  | 
| 
402
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         $c_dataref = $c_pdl->get_dataref;  | 
| 
403
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       }  | 
| 
404
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
       my $len = length $bytes;  | 
| 
405
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
       my $expected_len = $c_sizeof * $cols * $rows;  | 
| 
406
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
4
 | 
       croak "FATAL: len mismatch $len != $expected_len" if $len != $expected_len;  | 
| 
407
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
       substr($$c_dataref, $c_idx, $len) = $bytes;  | 
| 
408
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
       $c_idx += $len;  | 
| 
409
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
410
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
411
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
412
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   #XXX close $fh;  | 
| 
413
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
414
 | 
2
 | 
  
 50
  
 | 
  
 33
  
 | 
 
 | 
 
 | 
24
 | 
   if (blessed $c_pdl && $c_pdl->isa('PDL')) {  | 
| 
415
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
4
 | 
     if ($processed != $allocated) {  | 
| 
416
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
9
 | 
       warn "Reshaping to $processed (final)\n" if $O->{debug};  | 
| 
417
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
       $c_pdl->reshape($cols, $processed); # allocate the exact size  | 
| 
418
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
419
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
76
 | 
     $c_pdl->upd_data;  | 
| 
420
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
8
 | 
     return $c_pdl->transpose;  | 
| 
421
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
422
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
423
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   warn "rcsv2D: no data\n";  | 
| 
424
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   return undef;  | 
| 
425
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
426
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
427
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _dbg_msg {  | 
| 
428
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
 
 | 
0
 | 
   my ($O, $C) = @_;  | 
| 
429
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   sprintf "chunk=%s, reshape=%s, bad=%s/%s, sep_char='%s'",  | 
| 
430
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         $O->{fetch_chunk} ||= '?',  | 
| 
431
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         $O->{reshape_inc} ||= '?',  | 
| 
432
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         $O->{empty2bad}   ||= '?',  | 
| 
433
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         $O->{text2bad}    ||= '?',  | 
| 
434
 | 
  
0
  
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
         $C->{sep_char}    ||= '?';  | 
| 
 
 | 
 
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
 
 | 
 
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
 
 | 
 
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
 
 | 
 
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
435
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
436
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
437
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _proc_wargs {  | 
| 
438
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
  
0
  
 | 
 
 | 
0
 | 
   my $options        = ref $_[-1] eq 'HASH' ? pop : {};  | 
| 
439
 | 
  
0
  
 | 
  
  0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
   my $filename_or_fh = !blessed $_[-1] || !$_[-1]->isa('PDL') ? pop : undef;  | 
| 
440
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $fn = shift;  | 
| 
441
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
442
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $C = { %$options }; # make a copy  | 
| 
443
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
444
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @keys = qw/ debug header bad2empty encoding /;  | 
| 
445
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $O = { map { $_ => delete $C->{$_} } @keys };  | 
| 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
446
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   $O->{debug}     = DEBUG unless defined $O->{debug};  | 
| 
447
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   $O->{bad2empty} = 1     unless defined $O->{bad2empty};  | 
| 
448
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   $O->{header}    = ($fn eq '1D' ? 'auto' : 0) if !defined $O->{header};  | 
| 
 
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
449
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
450
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   # explicitely set  | 
| 
451
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   $C->{sep_char} = ','  unless defined $C->{sep_char};  | 
| 
452
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   $C->{eol}      = "\n" unless defined $C->{eol};  | 
| 
453
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
454
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   if (defined $O->{header}) {  | 
| 
455
 | 
  
0
  
 | 
  
  0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
     croak "FATAL: header should be arrayref" unless ref $O->{header} eq 'ARRAY' || $O->{header} eq 'auto';  | 
| 
456
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     if ($O->{header} eq 'auto') {  | 
| 
457
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       my @n;  | 
| 
458
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       my $count = 0;  | 
| 
459
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       for (@_) {  | 
| 
460
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         push @n, my $n = $_->hdr->{col_name};  | 
| 
461
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         $count++ if defined $n;  | 
| 
462
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       }  | 
| 
463
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $O->{header} = $count > 0 ? \@n : undef;  | 
| 
464
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
465
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
466
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
467
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $fh;  | 
| 
468
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   if (!defined $filename_or_fh) {  | 
| 
 
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
469
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $fh = \*STDOUT;  | 
| 
470
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
471
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   elsif (openhandle($filename_or_fh)) {  | 
| 
472
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $fh = $filename_or_fh;  | 
| 
473
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
474
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   else {  | 
| 
475
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     open $fh, ">", $filename_or_fh or croak "$filename_or_fh: $!";  | 
| 
476
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
477
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   binmode $fh, $O->{encoding} if $O->{encoding};  | 
| 
478
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
479
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   return ($fh, $O, $C);  | 
| 
480
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
481
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
482
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _proc_rargs {  | 
| 
483
 | 
4
 | 
  
100
  
 | 
 
 | 
  
4
  
 | 
 
 | 
15
 | 
   my $options = ref $_[-1] eq 'HASH' ? pop : {};  | 
| 
484
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9
 | 
   my ($fn, $filename_or_fh, $coli) = @_;  | 
| 
485
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
486
 | 
4
 | 
  
 50
  
 | 
  
 33
  
 | 
 
 | 
 
 | 
12
 | 
   croak "FATAL: invalid column ids" if defined $coli && ref $coli ne 'ARRAY';  | 
| 
487
 | 
4
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
9
 | 
   croak "FATAL: invalid filename"   unless defined $filename_or_fh;  | 
| 
488
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9
 | 
   my $C = { %$options }; # make a copy  | 
| 
489
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
490
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   # get options related to this module the rest will be passed to Text::CSV_XS  | 
| 
491
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
22
 | 
   my @keys = qw/ reshape_inc fetch_chunk type debug empty2bad text2bad header decimal_comma encoding detect_datetime /;  | 
| 
492
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
   my $O = { map { $_ => delete $C->{$_} } @keys };  | 
| 
 
 | 
40
 | 
 
 | 
 
 | 
 
 | 
 
 | 
53
 | 
    | 
| 
493
 | 
4
 | 
 
 | 
  
 50
  
 | 
 
 | 
 
 | 
23
 | 
   $O->{fetch_chunk} ||= 40_000;  | 
| 
494
 | 
4
 | 
 
 | 
  
 50
  
 | 
 
 | 
 
 | 
13
 | 
   $O->{reshape_inc} ||= 80_000;  | 
| 
495
 | 
4
 | 
  
100
  
 | 
  
 33
  
 | 
 
 | 
 
 | 
26
 | 
   $O->{type}        ||= ($fn eq '1D' ? 'auto' : double);  | 
| 
496
 | 
4
 | 
  
100
  
 | 
  
100
  
 | 
 
 | 
 
 | 
84
 | 
   $O->{header}      ||= ($fn eq '1D' ? 'auto' : 0);  | 
| 
497
 | 
4
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
11
 | 
   $O->{detect_datetime} = 1 unless defined $O->{detect_datetime};  | 
| 
498
 | 
4
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
13
 | 
   if ($O->{detect_datetime} =~ /%/) {  | 
| 
499
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
     $O->{strptime} = $O->{detect_datetime};  | 
| 
500
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
     $O->{detect_datetime} = 1;  | 
| 
501
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
502
 | 
4
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
10
 | 
   $O->{debug} = DEBUG unless defined $O->{debug};  | 
| 
503
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
504
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   # reshape_inc cannot be lower than fetch_chunk  | 
| 
505
 | 
4
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
10
 | 
   $O->{reshape_inc} = $O->{fetch_chunk} if $O->{reshape_inc} < $O->{fetch_chunk};  | 
| 
506
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
507
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   # explicitely set column separator default  | 
| 
508
 | 
4
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
12
 | 
   $C->{sep_char} = ',' unless defined $C->{sep_char};  | 
| 
509
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
510
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   # empty2bad implies some Text::CSV_XS extra options  | 
| 
511
 | 
4
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
9
 | 
   if ($O->{empty2bad}) {  | 
| 
512
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $C->{blank_is_undef} = 1;  | 
| 
513
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $C->{empty_is_undef} = 1;  | 
| 
514
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
515
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
516
 | 
4
 | 
  
 50
  
 | 
  
 33
  
 | 
 
 | 
 
 | 
10
 | 
   croak "FATAL: cannot use decimal_comma + sep_char ','" if $O->{decimal_comma} && $C->{sep_char} eq ',';  | 
| 
517
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
518
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   my $fh;  | 
| 
519
 | 
4
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
13
 | 
   if (openhandle($filename_or_fh)) {  | 
| 
520
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $fh = $filename_or_fh;  | 
| 
521
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
522
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   else {  | 
| 
523
 | 
4
 | 
  
 50
  
 | 
 
 | 
  
1
  
 | 
 
 | 
143
 | 
     open $fh, "<", $filename_or_fh or croak "$filename_or_fh: $!";  | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9
 | 
    | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
    | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
7
 | 
    | 
| 
524
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
525
 | 
4
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
978
 | 
   binmode $fh, $O->{encoding} if $O->{encoding};  | 
| 
526
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
527
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
15
 | 
   return ($fh, $coli, $O, $C);  | 
| 
528
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
529
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
530
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _init_1D {  | 
| 
531
 | 
2
 | 
 
 | 
 
 | 
  
2
  
 | 
 
 | 
3
 | 
   my ($coli, $firstline, $O) = @_;  | 
| 
532
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
   my $colcount = scalar @$firstline;  | 
| 
533
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
   my $cols;  | 
| 
534
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
7
 | 
   if (!defined $coli) {    # take all columns  | 
| 
535
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
     $cols = $colcount;  | 
| 
536
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
537
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   else {  | 
| 
538
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $cols = scalar @$coli;  | 
| 
539
 | 
  
0
  
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
     ($_<0 || $_>$colcount) and croak "FATAL: invalid column '$_' (column count=$colcount)" for (@$coli);  | 
| 
 
 | 
 
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
540
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
541
 | 
2
 | 
  
 50
  
 | 
  
 33
  
 | 
 
 | 
 
 | 
23
 | 
   croak "FATAL: invalid column count" unless $cols && $cols > 0 && $cols <= $colcount;  | 
| 
 
 | 
 
 | 
 
 | 
  
 33
  
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
542
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
543
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   my @c_type;  | 
| 
544
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   my @c_pack;  | 
| 
545
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_sizeof;  | 
| 
546
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_pdl;  | 
| 
547
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_bad;  | 
| 
548
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_dataref;  | 
| 
549
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my @c_idx;  | 
| 
550
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
551
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
9
 | 
   if (ref $O->{type} eq 'ARRAY') {  | 
| 
552
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_type[$_] = $O->{type}->[$_] for (0..$cols-1);  | 
| 
553
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
554
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   else {  | 
| 
555
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
14
 | 
     $c_type[$_] = $O->{type} for (0..$cols-1);  | 
| 
556
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
557
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
558
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   my @c_dt;  | 
| 
559
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
   for (0..$cols-1) {  | 
| 
560
 | 
2
 | 
  
 50
  
 | 
  
 33
  
 | 
 
 | 
 
 | 
11
 | 
     if (!defined $c_type[$_] || $c_type[$_] eq 'auto') {  | 
| 
 
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
 
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
561
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
       $c_type[$_] = undef;  | 
| 
562
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
7
 | 
       if ($O->{detect_datetime}) {  | 
| 
563
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
757
 | 
         croak "PDL::DateTime not installed" if NODATETIME;  | 
| 
564
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         my $v = $O->{strptime} ? _strptime($firstline->[$_], $O->{strptime}) : PDL::DateTime::dt2ll($firstline->[$_]);  | 
| 
565
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
         if (defined $v) {  | 
| 
566
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           $c_dt[$_] = $O->{strptime} ? $O->{strptime} : 'datetime';  | 
| 
567
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
           $c_type[$_] = longlong;  | 
| 
568
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
569
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       }  | 
| 
570
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
571
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     elsif ($c_type[$_] eq 'datetime') {  | 
| 
572
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       croak "PDL::DateTime not installed" if NODATETIME;  | 
| 
573
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $c_dt[$_] = 'datetime';  | 
| 
574
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $c_type[$_] = longlong;  | 
| 
575
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
576
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     elsif ($c_type[$_] =~ /%/) {  | 
| 
577
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $c_dt[$_] = $c_type[$_]; # strptime format  | 
| 
578
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
       $c_type[$_] = longlong;  | 
| 
579
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
580
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_type[$_] = double if !$c_type[$_];  | 
| 
581
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
582
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
583
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   my $allocated = $O->{reshape_inc};  | 
| 
584
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   for (0..$cols-1) {  | 
| 
585
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_type[$_] = double if !defined $c_type[$_];  | 
| 
586
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_pack[$_] = $pck{$c_type[$_]};  | 
| 
587
 | 
  
0
  
 | 
  
  0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
     croak "FATAL: your perl does not support 64bitint (avoid using type longlong)" if $c_pack[$_] eq 'q' && NO64BITINT;  | 
| 
588
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     croak "FATAL: invalid type '$c_type[$_]' for column $_" if !$c_pack[$_];  | 
| 
589
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_sizeof[$_] = length pack($c_pack[$_], 1);  | 
| 
590
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_pdl[$_] = $c_dt[$_] ? PDL::DateTime->new(zeroes(longlong, $allocated)) : zeroes($c_type[$_], $allocated);  | 
| 
591
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_dataref[$_] = $c_pdl[$_]->get_dataref;  | 
| 
592
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_bad[$_] = $c_pdl[$_]->badvalue;  | 
| 
593
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $c_idx[$_] = 0;  | 
| 
594
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     my $big = PDL::Core::howbig($c_pdl[$_]->get_datatype);  | 
| 
595
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     croak "FATAL: column $_ mismatch (type=$c_type[$_], sizeof=$c_sizeof[$_], big=$big)" if $big != $c_sizeof[$_];  | 
| 
596
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
597
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
598
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   return (\@c_type, \@c_pack, \@c_sizeof, \@c_pdl, \@c_bad, \@c_dataref, \@c_idx, (@c_dt > 0 ? \@c_dt : undef), $allocated, $cols);  | 
| 
599
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
600
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
601
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _init_2D {  | 
| 
602
 | 
2
 | 
 
 | 
 
 | 
  
2
  
 | 
 
 | 
4
 | 
   my ($coli, $colcount, $O) = @_;  | 
| 
603
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
604
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
   my $cols;  | 
| 
605
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
6
 | 
   if (!defined $coli) {    # take all columns  | 
| 
606
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
     $cols = $colcount;  | 
| 
607
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
608
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   else {  | 
| 
609
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
     $cols = scalar @$coli;  | 
| 
610
 | 
  
0
  
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
0
 | 
     ($_<0 || $_>$colcount) and croak "FATAL: invalid column '$_' (column count=$colcount)" for (@$coli);  | 
| 
 
 | 
 
 | 
 
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
611
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
   }  | 
| 
612
 | 
2
 | 
  
 50
  
 | 
  
 33
  
 | 
 
 | 
 
 | 
17
 | 
   croak "FATAL: invalid column count" unless $cols && $cols > 0 && $cols <= $colcount;  | 
| 
 
 | 
 
 | 
 
 | 
  
 33
  
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
613
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
614
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
   my $c_type = $O->{type};  | 
| 
615
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
7
 | 
   my $c_pack = $pck{$c_type};  | 
| 
616
 | 
2
 | 
  
 50
  
 | 
  
 50
  
 | 
 
 | 
 
 | 
27
 | 
   croak "FATAL: your perl does not support 64bitint (avoid using type longlong)" if $c_pack eq 'q' && NO64BITINT;  | 
| 
617
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   croak "FATAL: invalid type '$c_type' for column $_" if !$c_pack;  | 
| 
618
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
619
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
   my $allocated = $O->{reshape_inc};  | 
| 
620
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
   my $c_sizeof = length pack($c_pack, 1);  | 
| 
621
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
   my $c_pdl = zeroes($c_type, $cols, $allocated);  | 
| 
622
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3883
 | 
   my $c_dataref = $c_pdl->get_dataref;  | 
| 
623
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
10
 | 
   my $c_bad = $c_pdl->badvalue;  | 
| 
624
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
625
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
72
 | 
   my $big = PDL::Core::howbig($c_pdl->get_datatype);  | 
| 
626
 | 
2
 | 
  
 50
  
 | 
 
 | 
 
 | 
 
 | 
14
 | 
   croak "FATAL: column $_ size mismatch (type=$c_type, sizeof=$c_sizeof, big=$big)" if $big != $c_sizeof;  | 
| 
627
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
628
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
7
 | 
   return ($c_type, $c_pack, $c_sizeof, $c_pdl, $c_bad, $c_dataref, $allocated, $cols);  | 
| 
629
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
630
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
631
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _strptime {  | 
| 
632
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
 
 | 
0
 | 
   my ($string, $format) = @_;  | 
| 
633
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
   return eval { int POSIX::floor(Time::Piece->strptime($string, $format)->epoch * 1_000_000 + 0.5) };  | 
| 
 
 | 
0
 | 
 
 | 
 
 | 
 
 | 
 
 | 
0
 | 
    | 
| 
634
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
635
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
636
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 1;  | 
| 
637
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
638
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 __END__  |