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# ABSTRACT: Access Matplotlib from Perl; providing consistent user interface between different plot types |
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362130
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use strict; |
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use feature 'say'; |
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use warnings FATAL => 'all'; |
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use autodie ':all'; |
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49274
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package Matplotlib::Simple; |
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require 5.010; |
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our $VERSION = 0.301; |
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86592
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use Scalar::Util 'looks_like_number'; |
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use List::Util qw(max sum min); |
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use Term::ANSIColor; |
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43070
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use Cwd 'getcwd'; |
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240
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use File::Temp; |
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use DDP { output => 'STDOUT', array_max => 10, show_memsize => 1 }; |
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use Devel::Confess 'color'; |
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37194
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use FindBin '$RealScript'; |
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use Exporter 'import'; |
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136
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use Capture::Tiny 'capture'; |
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23274
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2168
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use JSON::MaybeXS; |
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57004
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362
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use MIME::Base64; |
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3896
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6
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160478
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our @EXPORT = qw(plt bar barh boxplot colored_table hexbin hist hist2d imshow pie plot scatter violinplot violin wide); |
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our @EXPORT_OK = @EXPORT; |
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my @ax_methods = ( |
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'ArtistList', 'add_child_axes', 'add_collection', 'add_container', |
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'add_image', 'add_line', 'add_patch', 'add_table', 'apply_aspect', |
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'autoscale_view', 'axison', 'bxp', 'callbacks', 'can_pan', 'can_zoom', |
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'child_axes', 'collections', 'containers', 'contains_point', 'dataLim', |
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'drag_pan', 'end_pan', 'fmt_xdata', 'fmt_ydata', 'format_coord', |
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'format_xdata', 'format_ydata','hexbin', 'hist', 'hist2d', 'hlines', |
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'ignore_existing_data_limits', 'in_axes', 'indicate_inset', |
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'indicate_inset_zoom', 'inset_axes', 'invert_xaxis', 'invert_yaxis', |
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'label_outer', 'legend_', 'name', 'pcolorfast', 'redraw_in_frame', 'relim', |
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'reset_position', 'scatter', 'secondary_xaxis', 'secondary_yaxis', 'set_adjustable', |
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'set_anchor', 'set_aspect', 'set_autoscale_on', 'set_autoscalex_on', 'set_autoscaley_on', |
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'set_axes_locator', 'set_axis_off', 'set_axis_on', 'set_axisbelow', |
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'set_box_aspect', 'set_fc', 'set_forward_navigation_events', |
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'set_frame_on', 'set_navigate', 'set_navigate_mode', |
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'set_position', 'set_prop_cycle', 'set_rasterization_zorder', |
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'set_subplotspec', 'set_title', 'set_xbound', 'set_xlabel', |
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'set_xlim', # ax.set_xlim(left, right), or ax.set_xlim(right = 180) |
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'set_xmargin', 'set_xscale', 'set_xticklabels', 'set_xticks', 'set_ybound', |
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'set_ylabel', 'set_ylim', 'set_ymargin', 'set_yscale', 'set_yticklabels', |
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'set_yticks', 'sharex', 'sharey', 'spines', 'start_pan', 'tables', |
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'text', 'tick_params', 'ticklabel_format', 'titleOffsetTrans', 'transAxes', 'transData', 'transLimits', |
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'transScale', 'update_datalim', 'use_sticky_edges', 'viewLim', 'vlines', 'violin', |
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'xaxis', 'xaxis_date', 'xaxis_inverted', 'yaxis', 'yaxis_date', |
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'yaxis_inverted' |
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); |
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my @fig_methods = ( |
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'add_artist', 'add_axes', 'add_axobserver', 'add_callback', 'add_gridspec', |
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'add_subfigure', 'add_subplot', 'align_labels', 'align_titles', |
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'align_xlabels', 'align_ylabels', 'artists', 'autofmt_xdate', #'axes', # same as plt |
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'bbox', 'bbox_inches', 'canvas', 'clear', 'clf', 'clipbox', |
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'colorbar', # same name as in plt, have to use on case-by-case |
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'contains', 'convert_xunits', 'convert_yunits', 'delaxes', 'dpi', |
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'dpi_scale_trans', 'draw', 'draw_artist', 'draw_without_rendering', |
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'figbbox', 'figimage', # 'figure', 'findobj', |
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'format_cursor_data', 'frameon', 'have_units', 'images', 'is_transform_set', # 'legend', legends', |
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'lines', 'mouseover', 'number', 'patch', 'patches', 'pchanged', 'pick', |
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'pickable', 'properties', 'remove', |
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'remove_callback', #'savefig', keeping plt instead |
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64
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'sca', 'set', 'set_agg_filter', 'set_alpha', 'set_animated', 'set_canvas', |
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'set_clip_box', 'set_clip_on', 'set_clip_path', 'set_constrained_layout', |
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66
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'set_constrained_layout_pads', 'set_dpi', 'set_edgecolor', 'set_facecolor', |
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'set_figheight' |
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, # default 4.8 # 'set_figure', # deprecated as of matplotlib 3.10.0 |
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'set_figwidth', # default 6.4 |
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'set_frameon', 'set_gid', 'set_in_layout', 'set_label', |
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'set_layout_engine', 'set_linewidth', 'set_mouseover', 'set_path_effects', |
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'set_picker', 'set_rasterized', 'set_size_inches', 'set_sketch_params', |
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'set_snap', 'set_tight_layout', 'set_transform', 'set_url', 'set_visible', |
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'set_zorder', # 'show', # keeping plt instead |
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'stale', 'stale_callback', 'sticky_edges', 'subfigs', |
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'subfigures', # subplot_mosaic', |
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'subplotpars', # subplots','subplots_adjust', |
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'suppressComposite', # 'suptitle', # keeping plt instead |
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'supxlabel', 'supylabel', #'text', |
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80
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'texts', #'tight_layout', |
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'transFigure', 'transSubfigure', 'update', |
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82
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'update_from', #'waitforbuttonpress', |
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83
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'zorder' |
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84
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); |
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85
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my @plt_methods = ( |
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86
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'AbstractContextManager', 'Annotation', 'Arrow', 'Artist', 'AutoLocator', |
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87
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'AxLine', 'Axes', 'BackendFilter', 'Button', 'Circle', 'Colorizer', |
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88
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'ColorizingArtist', 'Colormap', 'Enum', 'ExitStack', 'Figure', |
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89
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'FigureBase', 'FigureCanvasBase', 'FigureManagerBase', 'FixedFormatter', |
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90
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'FixedLocator', 'FormatStrFormatter', 'Formatter', 'FuncFormatter', |
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91
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'GridSpec', 'IndexLocator', 'Line2D', 'LinearLocator', 'Locator', |
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92
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'LogFormatter', 'LogFormatterExponent', 'LogFormatterMathtext', |
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93
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'LogLocator', 'MaxNLocator', 'MouseButton', 'MultipleLocator', 'Normalize', |
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94
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'NullFormatter', 'NullLocator', 'PolarAxes', 'Polygon', 'Rectangle', |
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95
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'ScalarFormatter', 'Slider', 'Subplot', 'SubplotSpec', 'TYPE_CHECKING', |
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96
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'Text', 'TickHelper', 'Widget', 'acorr', 'angle_spectrum', 'annotate', |
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97
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'annotations', 'arrow', 'autoscale', 'autumn', 'axes', 'axhline', |
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98
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'axhspan', 'axis', 'axline', 'axvline', 'axvspan', 'backend_registry', |
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99
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'bar_label', 'barbs', 'bone', 'box', 'boxplot', |
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100
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'broken_barh', 'cast', 'cbook', 'cla', 'clabel' |
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101
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, #'clf', # I don't think you'd ever do that, also redundant with fig |
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102
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'clim', 'close', 'cm', 'cohere', 'color_sequences', 'colorbar', |
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103
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'colormaps', 'connect', 'contour', 'contourf', 'cool', 'copper', 'csd', |
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104
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'cycler', 'delaxes', 'disconnect', 'draw', 'draw_all', |
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105
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'draw_if_interactive', 'ecdf', 'errorbar', 'eventplot', 'figaspect', |
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106
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'figimage', 'figlegend', 'fignum_exists', 'figtext', 'figure', 'fill', |
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107
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'fill_between', 'fill_betweenx', 'findobj', 'flag', 'functools', 'gca', |
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108
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'gcf', 'gci', 'get', 'get_backend', 'get_cmap', 'get_current_fig_manager', |
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109
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'get_figlabels', 'get_fignums', 'get_plot_commands', 'get_scale_names', |
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110
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'getp', 'ginput', 'gray', 'grid', |
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111
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'hot', 'hsv', 'importlib', 'imread', 'imsave', 'inferno', |
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112
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'inspect', 'install_repl_displayhook', 'interactive', 'ioff', 'ion', |
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113
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'isinteractive', 'jet', 'legend', 'locator_params', 'logging', 'loglog', |
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114
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'magma', 'magnitude_spectrum', 'margins', 'matplotlib', 'matshow', |
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115
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'minorticks_off', 'minorticks_on', 'mlab', 'new_figure_manager', |
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116
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'nipy_spectral', 'np', 'overload', 'pause', 'pcolor', 'pcolormesh', |
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117
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'phase_spectrum', 'pie', 'pink', 'plasma', 'plot', 'plot_date', 'polar', |
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118
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'prism', 'psd', 'quiver', 'quiverkey', 'rc', 'rcParams', 'rcParamsDefault', |
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119
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'rcParamsOrig', 'rc_context', 'rcdefaults', 'rcsetup', 'rgrids', 'savefig', |
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120
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'sca', #'scatter', # taken by "ax" |
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121
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'sci', 'semilogx', 'semilogy', 'set_cmap', 'set_loglevel', 'setp', 'show', |
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122
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'specgram', 'spring', 'spy', 'stackplot', 'stairs', 'stem', 'step', |
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123
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'streamplot', 'style', |
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124
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'subplot', # nrows, ncols : int, default: 1 |
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125
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'subplot2grid', 'subplot_mosaic', 'subplot_tool', 'subplots', |
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126
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'subplots_adjust', 'summer', 'suptitle', 'switch_backend', 'sys', 'table', |
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127
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# 'text' |
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128
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, # text(x: 'float', y: 'float', s: 'str', fontdict: 'dict[str, Any] | None' = None, **kwargs) -> 'Text' |
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129
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'thetagrids', 'threading',# 'tick_params', |
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130
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'tight_layout', 'time', 'title', 'tricontour', 'tricontourf', 'tripcolor', |
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131
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'triplot', |
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132
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#'twinx', 'twiny', |
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133
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'uninstall_repl_displayhook', 'violinplot', |
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134
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'viridis', 'waitforbuttonpress', 'winter', 'xcorr', 'xkcd',# 'vlines' |
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135
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'xlabel','xscale','ylabel', 'ylim', 'yscale', |
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136
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# 'xlim','xticks','yticks' |
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137
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); |
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138
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139
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my @arg = ('add', 'cmap', 'data', 'execute', 'fh', 'ncol', 'ncols', 'nrow', 'nrows', 'p', 'plot.type', 'plots', 'plot', 'output.file', 'scale', 'scalex', 'scaley', 'shared.colorbar', 'show', 'twinx'); |
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140
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my @cb_arg = ( |
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141
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'cbdrawedges', # for colarbar: Whether to draw lines at color boundaries |
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142
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'cblabel', # The label on the colorbar's long axis |
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143
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'cblocation', # of the colorbar None or {'left', 'right', 'top', 'bottom'} |
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144
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'cb_min', |
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145
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'cb_max', |
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146
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'cborientation', # None or {'vertical', 'horizontal'} |
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147
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'cbpad', # pad : float, default: 0.05 if vertical, 0.15 if horizontal; Fraction of original Axes between colorbar and new image Axes |
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148
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'cb_logscale'); |
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my %opt = ( |
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150
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barplot_helper => [ |
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151
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'color' |
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, # :mpltype:`color` or list of :mpltype:`color`, optional; The colors of the bar faces. This is an alias for *facecolor*. If both are given, *facecolor* takes precedence # if entering multiple colors, quoting isn't needed |
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'edgecolor' , # optional; The colors of the bar edges. |
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'key.order', # define the keys in an order (an array reference) |
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155
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'label', # an array of labels for grouped bar plots |
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156
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'linewidth', # float or array, optional; Width of the bar edge(s). If 0, don't draw edges |
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157
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'log' , # bool, default: False; If *True*, set the y-axis to be log scale. |
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'logscale', # equivalent to "log" |
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'stacked', # stack the groups on top of one another; default 0 = off |
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160
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'width', # float or array, default: 0.8; The width(s) of the bars. |
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161
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'xerr', # float or array-like of shape(N,) or shape(2, N), optional. If not *None*, add horizontal / vertical errorbars to the bar tips. The values are +/- sizes relative to the data: - scalar: symmetric +/- values for all bars # - shape(N,): symmetric +/- values for each bar # - shape(2, N): Separate - and + values for each bar. First row # contains the lower errors, the second row contains the upper # errors. # - *None*: No errorbar. (Default) |
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'yerr', # same as xerr, but better with bar |
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], |
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164
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boxplot_helper => [ |
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'color', # a hash, where keys are the keys in data, and values are colors, e.g. X => 'blue' |
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166
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'colors', 'key.order', |
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167
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'logscale', # array of "x" and/or "y" |
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168
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'notch', # Whether to draw a notched boxplot (`True`), or a rectangular boxplot (`False`) |
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169
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'orientation',# {'vertical', 'horizontal'}, default: 'vertical' |
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170
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'showcaps', # bool: Show the caps on the ends of whiskers; default "True" |
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'showfliers', #bool, default: :rc:`boxplot.showfliers`; Show the outliers beyond the caps. |
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'showmeans' #bool, default: :rc:`boxplot.showmeans` |
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173
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], |
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174
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colored_table_helper => [@cb_arg, |
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175
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'col.labels', |
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176
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'cmap', # the cmap used for coloring |
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177
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'colorbar.on', # only draw if colorbar is on |
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178
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'default_undefined', # what value should undefined values be assigned to? |
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179
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'mirror', # $data{A}{B} = $data{B}{A} |
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180
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'row.labels', # row labels |
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181
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'shared.colorbar', # array of 0-based indices for sharing a colorbar |
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182
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'show.numbers',# show the numbers or not, by default off. 0 = "off"; "show.numbers" > 0 => "on" |
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183
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'undef.color', # what color will undefined points be |
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184
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], |
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185
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hexbin_helper => [ @cb_arg, |
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186
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'cb_logscale', |
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187
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'cmap', # "gist_rainbow" by default |
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188
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'colorbar.on', # only draw colorbar if colorbar is on |
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189
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'key.order', # define the keys in an order (an array reference) |
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190
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'marginals', # If marginals is *True*, plot the marginal density as colormapped rectangles along the bottom of the x-axis and left of the y-axis. |
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191
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'mincnt' |
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192
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, # int >= 0, default: 0 If > 0, only display cells with at least *mincnt* number of points in the cell. |
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193
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'shared.colorbar', # array of 0-based indices for sharing a colorbar |
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194
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'vmax' |
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195
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, # When using scalar data and no explicit *norm*, *vmin* and *vmax* define the data range that the colormap cover |
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196
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'vmin' |
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197
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, # When using scalar data and no explicit *norm*, *vmin* and *vmax* define the data range that the colormap cover |
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198
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'xbins', # default 15 |
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199
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'xscale.hexbin', # 'linear', 'log'}, default: 'linear': Use a linear or log10 scale on the horizontal axis. |
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200
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'ybins', # default 15 |
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201
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'yscale.hexbin', # 'linear', 'log'}, default: 'linear': Use a linear or log10 scale on the vertical axis. |
|
202
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], |
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203
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hist_helper => [ |
|
204
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'alpha', # default 0.5; same for all sets |
|
205
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'bins' |
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206
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, # nt or sequence or str, default: :rc:`hist.bins`If *bins* is an integer, it defines the number of equal-width bins in the range. If *bins* is a sequence, it defines the bin edges, including the left edge of the first bin and the right edge of the last bin; in this case, bins may be unequally spaced. All but the last (righthand-most) bin is half-open |
|
207
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'color', # a hash, where keys are the keys in data, and values are colors, e.g. X => 'blue' |
|
208
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'colorbar.on', # only draw colorbar if colorbar is on |
|
209
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'logscale', # if set to > 1, the y-axis will be logarithmic |
|
210
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'orientation', # {'vertical', 'horizontal'}, default: 'vertical' |
|
211
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'shared.colorbar', # array of 0-based indices for sharing a colorbar |
|
212
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'show.legend' |
|
213
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], |
|
214
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hist2d_helper => [@cb_arg, |
|
215
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'cb_logscale', |
|
216
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'cmap', # "gist_rainbow" by default |
|
217
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'cmax', # All bins that has count < *cmin* or > *cmax* will not be displayed |
|
218
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'cmin', # color min |
|
219
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'colorbar.on', # only draw colorbar if colorbar is on |
|
220
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'density', # density : bool, default: False |
|
221
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'key.order', # define the keys in an order (an array reference) |
|
222
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'logscale', # logscale, an array of axes that will get log scale |
|
223
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|
'shared.colorbar', # array of 0-based indices for sharing a colorbar |
|
224
|
|
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|
'show.colorbar', |
|
225
|
|
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|
'vmax' |
|
226
|
|
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|
, # When using scalar data and no explicit *norm*, *vmin* and *vmax* define the data range that the colormap cover |
|
227
|
|
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|
|
'vmin' |
|
228
|
|
|
|
|
|
|
, # When using scalar data and no explicit *norm*, *vmin* and *vmax* define the data range that the colormap cover |
|
229
|
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'xbins', # default 15 |
|
230
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|
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|
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'xmin', 'xmax', 'ymin', 'ymax', |
|
231
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'ybins', # default 15 |
|
232
|
|
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|
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|
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], |
|
233
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|
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|
|
imshow_helper => [@cb_arg, |
|
234
|
|
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|
'cblabel', # colorbar label |
|
235
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|
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|
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|
|
'cbdrawedges', # for colorbar |
|
236
|
|
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|
|
'cblocation', # of the colorbar None or {'left', 'right', 'top', 'bottom'} |
|
237
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|
|
'cborientation', # None or {'vertical', 'horizontal'} |
|
238
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|
|
'cmap', # The Colormap instance or registered colormap name used to map scalar data to colors |
|
239
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|
|
'colorbar.on', # only draw if colorbar is on |
|
240
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|
'shared.colorbar', # array of 0-based indices for sharing a colorbar |
|
241
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|
|
'stringmap', # 'H' => 'Alpha helix' |
|
242
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'vmax', # float |
|
243
|
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'vmin', # flat |
|
244
|
|
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|
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|
|
], |
|
245
|
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|
pie_helper => [ |
|
246
|
|
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|
|
'autopct', # percent wise |
|
247
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|
|
|
|
|
|
#labeldistance and pctdistance are ratios of the radius; therefore they vary between 0 for the center of the pie and 1 for the edge of the pie, and can be set to greater than 1 to place text outside the pie https://matplotlib.org/stable/gallery/pie_and_polar_charts/pie_features.html |
|
248
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|
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'labeldistance', |
|
249
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|
'pctdistance', |
|
250
|
|
|
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|
|
], |
|
251
|
|
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|
plot_helper => [ |
|
252
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|
|
'key.order', # an array of key strings (which are defined in data) |
|
253
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|
|
'logscale', # an array of "x" and/or "y" |
|
254
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|
|
'show.legend', # be default on; should be 0 if off |
|
255
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|
|
'set.options', |
|
256
|
|
|
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|
|
'twinx.args' |
|
257
|
|
|
|
|
|
|
], |
|
258
|
|
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|
|
scatter_helper => [ |
|
259
|
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|
|
'color_key', # which of data keys is the color key |
|
260
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|
|
'cmap', # for 3-set scatterplots; default "gist_rainbow" |
|
261
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|
|
'colorbar.on', # only draw colorbar if colorbar is on |
|
262
|
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|
|
'keys', # specify the order, otherwise alphabetical #'log', # if set to > 1, the y-axis will be logarithmic # 's', # float or array-like, shape (n, ), optional. The marker size in points**2 (typographic points are 1/72 in.). |
|
263
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|
'logscale', # "x" and/or "y" as an aray |
|
264
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|
|
'shared.colorbar', # array of 0-based indices for sharing a colorbar |
|
265
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'show.legend', |
|
266
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'set.options' # color = 'red', marker = 'v', etc. |
|
267
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], |
|
268
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|
violin_helper => [ |
|
269
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|
'color', # a hash, where keys are the keys in data, and values are colors, e.g. X => 'blue' |
|
270
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'colorbar.on',# only draw colorbar if colorbar is on |
|
271
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'colors', |
|
272
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'key.order', |
|
273
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'logscale', # array: "x" and/or "y" |
|
274
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'orientation',# {'vertical', 'horizontal'}, default: 'vertical' |
|
275
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'whiskers' |
|
276
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], |
|
277
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|
wide_helper => [ |
|
278
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|
'color', # a hash, with each key assigned to a color "blue" or something |
|
279
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'show.legend', # be default on; should be 0 if off |
|
280
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|
], |
|
281
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|
); |
|
282
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|
sub write_data { |
|
283
|
69
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69
|
0
|
113
|
my ($args) = @_; |
|
284
|
69
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|
671
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1]; |
|
285
|
69
|
50
|
|
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|
251
|
if ( ref $args ne 'HASH' ) { |
|
286
|
0
|
|
|
|
|
0
|
die "args must be given as a hash ref, e.g. \"$current_sub({ data => ... })\""; |
|
287
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|
|
|
|
|
|
} |
|
288
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69
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|
134
|
my @reqd_args = ( |
|
289
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|
|
'data', # args to original function (scalar, hashref, or arrayref) |
|
290
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|
|
'fh', # file handle |
|
291
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|
|
'name' # python variable name |
|
292
|
|
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|
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|
|
); |
|
293
|
69
|
|
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|
|
92
|
my @undef_args = grep { not defined $args->{$_} } @reqd_args; |
|
|
207
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|
289
|
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|
294
|
69
|
50
|
|
|
|
111
|
if (scalar @undef_args > 0) { |
|
295
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
296
|
0
|
|
|
|
|
0
|
die "the above args are required for $current_sub, but weren't defined"; |
|
297
|
|
|
|
|
|
|
} |
|
298
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|
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|
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|
|
# 1. Create the JSON Encoder; allow_nonref: allows scalars (strings/numbers) to be encoded |
|
299
|
69
|
|
|
|
|
482
|
my $json_encoder = JSON::MaybeXS->new->utf8->allow_nonref; |
|
300
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|
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|
|
|
# 2. Serialize Perl Data -> JSON String; Passing data directly. JSON::MaybeXS handles refs + scalars automatically. |
|
301
|
69
|
|
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|
|
1246
|
my $json_string = $json_encoder->encode($args->{data}); |
|
302
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|
|
|
|
|
|
# 3. Base64 Encode the JSON String, not the reference |
|
303
|
69
|
|
|
|
|
224
|
my $b64_data = encode_base64($json_string, ''); |
|
304
|
|
|
|
|
|
|
# Assign the b64 string to a temp python variable |
|
305
|
69
|
|
|
|
|
90
|
say {$args->{fh}} "$args->{name}_b64 = '$b64_data'"; |
|
|
69
|
|
|
|
|
396
|
|
|
306
|
|
|
|
|
|
|
# Decode b64 -> bytes -> utf8 string -> json load -> python object |
|
307
|
69
|
|
|
|
|
82
|
say {$args->{fh}} "$args->{name} = json.loads(base64.b64decode($args->{name}_b64).decode('utf-8'))"; |
|
|
69
|
|
|
|
|
688
|
|
|
308
|
|
|
|
|
|
|
} |
|
309
|
|
|
|
|
|
|
sub plot_args { # this is a helper function to other matplotlib subroutines |
|
310
|
79
|
|
|
79
|
0
|
134
|
my ($args) = @_; |
|
311
|
79
|
|
|
|
|
672
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1]; |
|
312
|
79
|
50
|
|
|
|
578
|
if ( ref $args ne 'HASH' ) { |
|
313
|
0
|
|
|
|
|
0
|
die "args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
314
|
|
|
|
|
|
|
} |
|
315
|
79
|
|
|
|
|
163
|
my @reqd_args = ( |
|
316
|
|
|
|
|
|
|
'ax', # ax1, ax2, etc. when there are multiple plots |
|
317
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
318
|
|
|
|
|
|
|
'args', # args to original function |
|
319
|
|
|
|
|
|
|
); |
|
320
|
79
|
|
|
|
|
103
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
237
|
|
|
|
|
347
|
|
|
321
|
79
|
50
|
|
|
|
126
|
if ( scalar @undef_args > 0 ) { |
|
322
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
323
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
324
|
|
|
|
|
|
|
} |
|
325
|
79
|
|
|
|
|
2940
|
my @defined_args = ( @reqd_args, @ax_methods, @fig_methods, @plt_methods, @arg, @cb_arg ); |
|
326
|
|
|
|
|
|
|
my @bad_args = grep { |
|
327
|
237
|
|
|
|
|
252
|
my $key = $_; |
|
328
|
237
|
|
|
|
|
613
|
not grep { $_ eq $key } @defined_args |
|
|
108783
|
|
|
|
|
111506
|
|
|
329
|
79
|
|
|
|
|
109
|
} keys %{$args}; |
|
|
79
|
|
|
|
|
161
|
|
|
330
|
79
|
50
|
|
|
|
199
|
if ( scalar @bad_args > 0 ) { |
|
331
|
0
|
|
|
|
|
0
|
p @bad_args, array_max => scalar @bad_args; |
|
332
|
0
|
|
|
|
|
0
|
say 'the above arguments are not recognized.'; |
|
333
|
0
|
|
|
|
|
0
|
p @defined_args, array_max => scalar @defined_args; |
|
334
|
0
|
|
|
|
|
0
|
die 'The above args are accepted.'; |
|
335
|
|
|
|
|
|
|
} |
|
336
|
79
|
|
50
|
|
|
201
|
$args->{ax} = $args->{ax} // 'ax'; |
|
337
|
79
|
|
|
|
|
129
|
foreach my $item ( |
|
338
|
553
|
|
|
|
|
800
|
grep { defined $args->{args}{$_} } ( # no quotes! |
|
339
|
|
|
|
|
|
|
'set_title', 'set_xlabel', 'set_ylabel', 'suptitle', |
|
340
|
|
|
|
|
|
|
'xlabel', 'ylabel', 'title' |
|
341
|
|
|
|
|
|
|
) |
|
342
|
|
|
|
|
|
|
) |
|
343
|
|
|
|
|
|
|
{ |
|
344
|
41
|
100
|
|
|
|
231
|
if ( $args->{args}{$item} =~ m/^([^\"\',]+)$/ ) { |
|
345
|
39
|
|
|
|
|
95
|
$args->{args}{$item} = "'$args->{args}{$item}'"; |
|
346
|
|
|
|
|
|
|
} |
|
347
|
|
|
|
|
|
|
} |
|
348
|
79
|
|
|
|
|
179
|
my @obj = ( $args->{ax}, 'fig', 'plt' ); |
|
349
|
79
|
|
|
|
|
141
|
my @args = ( \@ax_methods, \@fig_methods, \@plt_methods ); |
|
350
|
79
|
|
|
|
|
222
|
foreach my $i ( 0 .. $#args ) { |
|
351
|
237
|
|
|
|
|
240
|
foreach my $method ( grep { defined $args->{args}{$_} } @{ $args[$i] } ) { |
|
|
33812
|
|
|
|
|
39356
|
|
|
|
237
|
|
|
|
|
410
|
|
|
352
|
44
|
|
|
|
|
62
|
my $ref = ref $args->{args}{$method}; |
|
353
|
44
|
50
|
66
|
|
|
151
|
if ( ( $ref ne 'ARRAY' ) && ( $ref ne '' ) ) { |
|
354
|
0
|
|
|
|
|
0
|
die "$current_sub only accepts scalar or array types, but \"$ref\" was entered."; |
|
355
|
|
|
|
|
|
|
} |
|
356
|
44
|
100
|
|
|
|
88
|
if ( $ref eq '' ) { |
|
357
|
43
|
50
|
|
|
|
72
|
if ($method eq 'show') { |
|
358
|
0
|
|
|
|
|
0
|
next; # plt.show() is emitted by plt() after plt.savefig() |
|
359
|
|
|
|
|
|
|
} else { |
|
360
|
43
|
|
|
|
|
45
|
say {$args->{fh}} "$obj[$i].$method($args->{args}{$method}) #line" . __LINE__; |
|
|
43
|
|
|
|
|
329
|
|
|
361
|
|
|
|
|
|
|
} |
|
362
|
43
|
|
|
|
|
79
|
next; |
|
363
|
|
|
|
|
|
|
} |
|
364
|
|
|
|
|
|
|
# can only be ARRAY |
|
365
|
1
|
|
|
|
|
2
|
foreach my $j ( @{ $args->{args}{$method} } ) { |
|
|
1
|
|
|
|
|
3
|
|
|
366
|
1
|
|
|
|
|
1
|
say { $args->{fh} } "$obj[$i].$method($j) #line" . __LINE__; |
|
|
1
|
|
|
|
|
4
|
|
|
367
|
|
|
|
|
|
|
} |
|
368
|
|
|
|
|
|
|
} |
|
369
|
|
|
|
|
|
|
} |
|
370
|
79
|
50
|
|
|
|
162
|
return unless defined $args->{ax}; |
|
371
|
79
|
|
50
|
|
|
258
|
my $legend = $args->{args}{legend} // ''; |
|
372
|
79
|
|
|
|
|
90
|
my $pie_plot = 0; |
|
373
|
79
|
100
|
100
|
|
|
255
|
if ( ( defined $args->{args}{'plot.type'} ) |
|
374
|
|
|
|
|
|
|
&& ( $args->{args}{'plot.type'} eq 'pie' ) ) { |
|
375
|
2
|
|
|
|
|
4
|
$pie_plot = 1; |
|
376
|
|
|
|
|
|
|
} |
|
377
|
79
|
100
|
|
|
|
152
|
return 1 if $pie_plot == 1; |
|
378
|
|
|
|
|
|
|
# pie charts don't get legends |
|
379
|
77
|
|
|
|
|
92
|
say { $args->{fh} } |
|
|
77
|
|
|
|
|
295
|
|
|
380
|
|
|
|
|
|
|
"handles, labels = $args->{ax}.get_legend_handles_labels()"; |
|
381
|
77
|
|
|
|
|
91
|
say { $args->{fh} } 'if len(labels) > 0:'; |
|
|
77
|
|
|
|
|
120
|
|
|
382
|
77
|
|
|
|
|
81
|
say { $args->{fh} } "\t$args->{ax}.legend($legend)"; |
|
|
77
|
|
|
|
|
1369
|
|
|
383
|
|
|
|
|
|
|
} |
|
384
|
|
|
|
|
|
|
sub barplot_helper { # this is a helper function to other matplotlib subroutines |
|
385
|
7
|
|
|
7
|
0
|
21
|
my ($args) = @_; |
|
386
|
7
|
|
|
|
|
126
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
387
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
388
|
7
|
50
|
|
|
|
45
|
if ( ref $args ne 'HASH' ) { |
|
389
|
0
|
|
|
|
|
0
|
die |
|
390
|
|
|
|
|
|
|
"args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
391
|
|
|
|
|
|
|
} |
|
392
|
7
|
|
|
|
|
21
|
my @reqd_args = ( |
|
393
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
394
|
|
|
|
|
|
|
'plot', # args to original function |
|
395
|
|
|
|
|
|
|
); |
|
396
|
7
|
|
|
|
|
43
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
14
|
|
|
|
|
43
|
|
|
397
|
7
|
50
|
|
|
|
22
|
if ( scalar @undef_args > 0 ) { |
|
398
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
399
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
400
|
|
|
|
|
|
|
} |
|
401
|
7
|
|
|
|
|
29
|
my @opt = ('ax', @reqd_args, @ax_methods, @plt_methods, @fig_methods, @arg, @{ $opt{$current_sub} } ); |
|
|
7
|
|
|
|
|
407
|
|
|
402
|
7
|
|
|
|
|
19
|
my $plot = $args->{plot}; |
|
403
|
|
|
|
|
|
|
my @bad_opt = grep { |
|
404
|
44
|
|
|
|
|
56
|
my $key = $_; |
|
405
|
44
|
|
|
|
|
120
|
not grep { $_ eq $key } @opt |
|
|
20328
|
|
|
|
|
20895
|
|
|
406
|
7
|
|
|
|
|
10
|
} keys %{$plot}; |
|
|
7
|
|
|
|
|
26
|
|
|
407
|
7
|
|
50
|
|
|
34
|
my $ax = $args->{ax} // ''; |
|
408
|
7
|
100
|
|
|
|
29
|
if ( scalar @bad_opt > 0 ) { |
|
409
|
1
|
|
|
|
|
7
|
p @bad_opt; |
|
410
|
1
|
|
|
|
|
3444
|
die |
|
411
|
|
|
|
|
|
|
"The above arguments aren't defined for $plot->{'plot.type'} at plot position $ax"; |
|
412
|
|
|
|
|
|
|
} |
|
413
|
6
|
|
|
|
|
10
|
my ( %ref_counts, $plot_type ); |
|
414
|
6
|
|
|
|
|
10
|
foreach my $set ( keys %{ $plot->{data} } ) { |
|
|
6
|
|
|
|
|
24
|
|
|
415
|
14
|
|
|
|
|
31
|
$ref_counts{ ref $plot->{data}{$set} }++; |
|
416
|
|
|
|
|
|
|
} |
|
417
|
6
|
50
|
|
|
|
15
|
if ( scalar keys %ref_counts > 1 ) { |
|
418
|
0
|
|
|
|
|
0
|
p $plot->{data}; |
|
419
|
0
|
|
|
|
|
0
|
p %ref_counts; |
|
420
|
0
|
|
|
|
|
0
|
die |
|
421
|
|
|
|
|
|
|
"different kinds of data were entered to plot $ax which should be simple hash or hash of arrays."; |
|
422
|
|
|
|
|
|
|
} |
|
423
|
6
|
100
|
|
|
|
21
|
if ( defined $ref_counts{''} ) { |
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
424
|
4
|
|
|
|
|
8
|
$plot_type = 'simple'; |
|
425
|
|
|
|
|
|
|
} elsif ( defined $ref_counts{'ARRAY'} ) { |
|
426
|
0
|
|
|
|
|
0
|
$plot_type = 'grouped'; |
|
427
|
|
|
|
|
|
|
} elsif ( defined $ref_counts{'HASH'} ) { |
|
428
|
2
|
|
|
|
|
3
|
$plot_type = 'grouped'; # now make the hash of hash into a ARRAY structure |
|
429
|
2
|
|
|
|
|
4
|
my %key2; |
|
430
|
2
|
|
|
|
|
4
|
foreach my $key1 ( keys %{ $plot->{data} } ) { |
|
|
2
|
|
|
|
|
4
|
|
|
431
|
4
|
|
|
|
|
15
|
foreach my $key2 ( keys %{ $plot->{data}{$key1} } ) { |
|
|
4
|
|
|
|
|
9
|
|
|
432
|
8
|
|
|
|
|
13
|
$key2{$key2}++; |
|
433
|
|
|
|
|
|
|
} |
|
434
|
|
|
|
|
|
|
} |
|
435
|
2
|
|
|
|
|
13
|
my @key2 = sort { lc $a cmp lc $b } keys %key2; |
|
|
2
|
|
|
|
|
9
|
|
|
436
|
2
|
|
|
|
|
3
|
my %new_structure; |
|
437
|
2
|
|
|
|
|
5
|
foreach my $k1 ( keys %{ $plot->{data} } ) { |
|
|
2
|
|
|
|
|
4
|
|
|
438
|
4
|
|
|
|
|
4
|
@{ $new_structure{$k1} } = @{ $plot->{data}{$k1} }{@key2}; |
|
|
4
|
|
|
|
|
10
|
|
|
|
4
|
|
|
|
|
6
|
|
|
439
|
|
|
|
|
|
|
} |
|
440
|
2
|
|
|
|
|
4
|
@{ $plot->{label} } = @key2; |
|
|
2
|
|
|
|
|
6
|
|
|
441
|
2
|
|
|
|
|
6
|
$plot->{data} = \%new_structure; |
|
442
|
|
|
|
|
|
|
} else { |
|
443
|
0
|
|
|
|
|
0
|
p %ref_counts; |
|
444
|
0
|
|
|
|
|
0
|
p $plot->{data}; |
|
445
|
0
|
|
|
|
|
0
|
die 'the above plot type is not yet programmed in to bar/barh'; |
|
446
|
|
|
|
|
|
|
} |
|
447
|
6
|
|
100
|
|
|
28
|
$plot->{stacked} = $plot->{stacked} // 0; |
|
448
|
6
|
50
|
66
|
|
|
34
|
if ( ( $plot_type eq 'grouped' ) |
|
|
|
|
33
|
|
|
|
|
|
449
|
|
|
|
|
|
|
&& ( defined $plot->{width} ) |
|
450
|
|
|
|
|
|
|
&& ( $plot->{stacked} == 0 ) ) |
|
451
|
|
|
|
|
|
|
{ |
|
452
|
0
|
|
|
|
|
0
|
say STDERR 'grouped, non-stacked barplots ignore width settings'; |
|
453
|
0
|
|
|
|
|
0
|
delete $plot->{width}; |
|
454
|
|
|
|
|
|
|
} |
|
455
|
6
|
|
|
|
|
22
|
my @key_order; |
|
456
|
6
|
50
|
|
|
|
13
|
if ( defined $plot->{'key.order'} ) { |
|
457
|
0
|
|
|
|
|
0
|
@key_order = @{ $plot->{'key.order'} }; |
|
|
0
|
|
|
|
|
0
|
|
|
458
|
|
|
|
|
|
|
} else { |
|
459
|
6
|
|
|
|
|
10
|
@key_order = sort keys %{ $plot->{data} }; |
|
|
6
|
|
|
|
|
25
|
|
|
460
|
|
|
|
|
|
|
} |
|
461
|
6
|
|
|
|
|
10
|
my $options = ''; # these args go to the plt.bar call |
|
462
|
6
|
50
|
33
|
|
|
26
|
if ( $plot->{'log'} || $plot->{logscale}) { |
|
463
|
0
|
|
|
|
|
0
|
$options .= ', log = True'; |
|
464
|
|
|
|
|
|
|
} # args that can be either arrays or strings below; STRINGS: |
|
465
|
6
|
|
|
|
|
13
|
foreach my $c ( grep { defined $plot->{$_} } ( 'color', 'edgecolor' ) ) { |
|
|
12
|
|
|
|
|
24
|
|
|
466
|
1
|
50
|
33
|
|
|
9
|
next if ( ( $c eq 'color' ) && ( $plot_type eq 'grouped' ) && ( ref $plot->{$c} ne '' ) ); |
|
|
|
|
33
|
|
|
|
|
|
467
|
1
|
|
|
|
|
2
|
my $ref = ref $plot->{$c}; |
|
468
|
1
|
50
|
|
|
|
3
|
if ( $ref eq '' ) { # single color |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
469
|
1
|
|
|
|
|
4
|
$options .= ", $c = '$plot->{$c}'"; |
|
470
|
|
|
|
|
|
|
} elsif ( $ref eq 'ARRAY' ) { |
|
471
|
0
|
|
|
|
|
0
|
$options .= ", $c = [\"" . join( '","', @{ $plot->{$c} } ) . '"]'; |
|
|
0
|
|
|
|
|
0
|
|
|
472
|
|
|
|
|
|
|
} elsif ( $ref eq 'HASH') { |
|
473
|
|
|
|
|
|
|
|
|
474
|
|
|
|
|
|
|
} else { |
|
475
|
0
|
|
|
|
|
0
|
die "ref \"$ref\" isn't defined"; |
|
476
|
|
|
|
|
|
|
} |
|
477
|
|
|
|
|
|
|
} # args that can be either arrays or strings below; NUMERIC: |
|
478
|
6
|
|
|
|
|
9
|
foreach my $c ( grep { defined $plot->{$_} } ('linewidth') ) { |
|
|
6
|
|
|
|
|
14
|
|
|
479
|
0
|
|
|
|
|
0
|
my $ref = ref $plot->{$c}; |
|
480
|
0
|
0
|
|
|
|
0
|
if ( $ref eq '' ) { # single color |
|
|
|
0
|
|
|
|
|
|
|
481
|
0
|
|
|
|
|
0
|
$options .= ", $c = $plot->{$c}"; |
|
482
|
|
|
|
|
|
|
} elsif ( $ref eq 'ARRAY' ) { |
|
483
|
0
|
|
|
|
|
0
|
$options .= ", $c = [" . join( ',', @{ $plot->{$c} } ) . ']'; |
|
|
0
|
|
|
|
|
0
|
|
|
484
|
|
|
|
|
|
|
} else { |
|
485
|
0
|
|
|
|
|
0
|
p $args; |
|
486
|
0
|
|
|
|
|
0
|
die "$ref for $c isn't acceptable"; |
|
487
|
|
|
|
|
|
|
} |
|
488
|
|
|
|
|
|
|
} |
|
489
|
6
|
|
|
|
|
11
|
foreach my $err ( grep { defined $plot->{$_} } ( 'xerr', 'yerr' ) ) { |
|
|
12
|
|
|
|
|
19
|
|
|
490
|
0
|
|
|
|
|
0
|
my $ref = ref $plot->{$err}; |
|
491
|
0
|
0
|
|
|
|
0
|
if ( $ref eq '' ) { |
|
|
|
0
|
|
|
|
|
|
|
492
|
0
|
|
|
|
|
0
|
$options .= ", $err = $plot->{$err}"; |
|
493
|
|
|
|
|
|
|
} elsif ( $ref eq 'HASH' ) { # I assume that it's all defined |
|
494
|
0
|
|
|
|
|
0
|
my ( @low, @high ); |
|
495
|
0
|
|
|
|
|
0
|
foreach my $i (@key_order) { |
|
496
|
0
|
0
|
|
|
|
0
|
if ( scalar @{ $plot->{$err}{$i} } != 2 ) { |
|
|
0
|
|
|
|
|
0
|
|
|
497
|
0
|
|
|
|
|
0
|
p $plot->{$err}{$i}; |
|
498
|
0
|
|
|
|
|
0
|
die "$err/$i should have exactly 2 items: low and high error bars"; |
|
499
|
|
|
|
|
|
|
} |
|
500
|
0
|
|
|
|
|
0
|
push @low, $plot->{$err}{$i}[0]; |
|
501
|
0
|
|
|
|
|
0
|
push @high, $plot->{$err}{$i}[1]; |
|
502
|
|
|
|
|
|
|
} |
|
503
|
|
|
|
|
|
|
$options .= |
|
504
|
0
|
|
|
|
|
0
|
", $err = [[" |
|
505
|
|
|
|
|
|
|
. join( ',', @low ) . '],[' |
|
506
|
|
|
|
|
|
|
. join( ',', @high ) . ']]'; |
|
507
|
|
|
|
|
|
|
} else { |
|
508
|
0
|
|
|
|
|
0
|
p $args; |
|
509
|
0
|
|
|
|
|
0
|
die "$ref for $err isn't acceptable"; |
|
510
|
|
|
|
|
|
|
} |
|
511
|
|
|
|
|
|
|
} |
|
512
|
6
|
100
|
|
|
|
21
|
if ( $plot_type eq 'simple' ) { # a simple hash -> simple bar plot |
|
|
|
50
|
|
|
|
|
|
|
513
|
|
|
|
|
|
|
write_data({ |
|
514
|
|
|
|
|
|
|
data => \@key_order, |
|
515
|
|
|
|
|
|
|
fh => $args->{fh}, |
|
516
|
4
|
|
|
|
|
26
|
name => 'labels' |
|
517
|
|
|
|
|
|
|
}); |
|
518
|
4
|
|
|
|
|
11
|
say { $args->{fh} } 'vals = [' . join( ',', @{ $plot->{data} }{@key_order} ) . ']'; |
|
|
4
|
|
|
|
|
9
|
|
|
|
4
|
|
|
|
|
35
|
|
|
519
|
4
|
50
|
33
|
|
|
20
|
if ((defined $plot->{color}) && (ref $plot->{color} eq 'HASH')) { |
|
520
|
0
|
|
|
|
|
0
|
@undef_args = grep {not defined $plot->{color}{$_}} @key_order; |
|
|
0
|
|
|
|
|
0
|
|
|
521
|
0
|
0
|
|
|
|
0
|
if (scalar @undef_args > 0) { |
|
522
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
523
|
0
|
|
|
|
|
0
|
die 'the above keys were not defined in the colors hash'; |
|
524
|
|
|
|
|
|
|
} |
|
525
|
0
|
|
|
|
|
0
|
$options .= ',color = ["' . join ('","', @{ $plot->{color} }{@key_order} ) . '"]'; |
|
|
0
|
|
|
|
|
0
|
|
|
526
|
|
|
|
|
|
|
} |
|
527
|
4
|
|
|
|
|
7
|
say { $args->{fh} } "ax$ax.$plot->{'plot.type'}(labels, vals $options)"; |
|
|
4
|
|
|
|
|
83
|
|
|
528
|
|
|
|
|
|
|
} elsif ( $plot_type eq 'grouped' ) { # grouped bar plot; hash of array |
|
529
|
2
|
|
|
|
|
5
|
my @val; |
|
530
|
2
|
|
|
|
|
12
|
foreach my $k (@key_order) { |
|
531
|
4
|
|
|
|
|
5
|
foreach my $i ( 0 .. scalar @{ $plot->{data}{$k} } - 1 ) { |
|
|
4
|
|
|
|
|
11
|
|
|
532
|
8
|
|
50
|
|
|
16
|
$plot->{data}{$k}[$i] = $plot->{data}{$k}[$i] // 0; # must match in both sets |
|
533
|
8
|
|
|
|
|
8
|
push @{ $val[$i] }, $plot->{data}{$k}[$i]; |
|
|
8
|
|
|
|
|
13
|
|
|
534
|
|
|
|
|
|
|
} |
|
535
|
|
|
|
|
|
|
} |
|
536
|
2
|
|
50
|
|
|
9
|
my $barwidth = $plot->{width} // 0.8; |
|
537
|
2
|
|
50
|
|
|
6
|
$plot->{stacked} = $plot->{stacked} // 0; |
|
538
|
2
|
100
|
|
|
|
6
|
if ( $plot->{stacked} == 0 ) { |
|
539
|
1
|
|
|
|
|
2
|
$barwidth /= ( scalar @val + 1 ); # @val holds one array per bar series |
|
540
|
|
|
|
|
|
|
} |
|
541
|
2
|
|
|
|
|
4
|
my @xticks = 0 .. scalar @{ $val[0] } - 1; |
|
|
2
|
|
|
|
|
6
|
|
|
542
|
2
|
|
|
|
|
5
|
my @mean_pos = map { 0 } 0 .. scalar @{ $val[0] } - 1; # initialize |
|
|
4
|
|
|
|
|
7
|
|
|
|
2
|
|
|
|
|
3
|
|
|
543
|
2
|
|
|
|
|
4
|
my $hw = 'height'; |
|
544
|
2
|
100
|
|
|
|
8
|
$hw = 'width' if $plot->{'plot.type'} eq 'bar'; |
|
545
|
2
|
|
|
|
|
4
|
my @bottom = map { 0 } 0 .. scalar @{ $val[0] } - 1; # initialize |
|
|
4
|
|
|
|
|
6
|
|
|
|
2
|
|
|
|
|
4
|
|
|
546
|
2
|
|
|
|
|
3
|
my $i = 0; |
|
547
|
2
|
|
|
|
|
4
|
foreach my $arr (@val) { |
|
548
|
4
|
|
|
|
|
14
|
my $x = '[' . join( ',', @xticks ) . ']'; |
|
549
|
4
|
|
|
|
|
5
|
foreach my $p ( 0 .. $#mean_pos ) { |
|
550
|
8
|
|
|
|
|
11
|
$mean_pos[$p] += $xticks[$p]; |
|
551
|
|
|
|
|
|
|
} |
|
552
|
4
|
|
|
|
|
6
|
my $set_options = ''; |
|
553
|
4
|
|
|
|
|
5
|
foreach |
|
554
|
8
|
100
|
|
|
|
40
|
my $f ( grep { ( ref $plot->{$_} eq 'ARRAY' ) && defined $plot->{$_}[$i] } ( 'color', 'label' ) ) |
|
555
|
|
|
|
|
|
|
{ |
|
556
|
4
|
|
|
|
|
7
|
$set_options .= ", $f = '$plot->{$f}[$i]'"; |
|
557
|
|
|
|
|
|
|
} |
|
558
|
4
|
100
|
|
|
|
7
|
if ( $plot->{stacked} > 0 ) { |
|
559
|
2
|
50
|
|
|
|
7
|
my $stack_kwarg = $plot->{'plot.type'} eq 'barh' ? 'left' : 'bottom'; |
|
560
|
2
|
|
|
|
|
7
|
$set_options .= ", $stack_kwarg = [" . join( ',', @bottom ) . ']'; |
|
561
|
|
|
|
|
|
|
} |
|
562
|
4
|
|
|
|
|
10
|
say { $args->{fh} } "ax$ax.$plot->{'plot.type'}($x, [" |
|
563
|
4
|
|
|
|
|
5
|
. join( ',', @{$arr} ) |
|
|
4
|
|
|
|
|
24
|
|
|
564
|
|
|
|
|
|
|
. "], $hw = $barwidth $options $set_options)"; |
|
565
|
|
|
|
|
|
|
@bottom = |
|
566
|
4
|
|
|
|
|
8
|
map { $bottom[$_] + $arr->[$_] } 0 .. scalar @{ $val[0] } - 1 |
|
|
2
|
|
|
|
|
4
|
|
|
567
|
4
|
100
|
|
|
|
10
|
if $plot->{stacked} > 0; |
|
568
|
4
|
|
|
|
|
8
|
@xticks = map { $_ + $barwidth } @xticks |
|
569
|
4
|
100
|
|
|
|
8
|
if $plot->{stacked} <= 0; # for next iteration |
|
570
|
4
|
|
|
|
|
5
|
$i++; |
|
571
|
|
|
|
|
|
|
} |
|
572
|
2
|
|
|
|
|
4
|
my $xticks = '["' . join( '","', @key_order ) . '"]'; |
|
573
|
2
|
|
|
|
|
3
|
my $ticks = 'yticks'; |
|
574
|
2
|
100
|
|
|
|
7
|
$ticks = 'xticks' if $plot->{'plot.type'} eq 'bar'; |
|
575
|
2
|
|
|
|
|
6
|
$_ /= scalar @val for @mean_pos; |
|
576
|
2
|
|
|
|
|
2
|
say { $args->{fh} } "ax$ax.set_$ticks([" |
|
|
2
|
|
|
|
|
47
|
|
|
577
|
|
|
|
|
|
|
. join( ',', @mean_pos ) |
|
578
|
|
|
|
|
|
|
. "], $xticks)"; |
|
579
|
|
|
|
|
|
|
} else { |
|
580
|
0
|
|
|
|
|
0
|
die |
|
581
|
|
|
|
|
|
|
"\$plot_type = $plot_type & stacked = $plot->{stacked}and isn't defined."; |
|
582
|
|
|
|
|
|
|
} |
|
583
|
|
|
|
|
|
|
} |
|
584
|
|
|
|
|
|
|
|
|
585
|
|
|
|
|
|
|
sub boxplot_helper { |
|
586
|
4
|
|
|
4
|
0
|
14
|
my ($args) = @_; |
|
587
|
4
|
|
|
|
|
44
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
588
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
589
|
4
|
50
|
|
|
|
17
|
if ( ref $args ne 'HASH' ) { |
|
590
|
0
|
|
|
|
|
0
|
die "args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
591
|
|
|
|
|
|
|
} |
|
592
|
4
|
|
|
|
|
12
|
my @reqd_args = ( |
|
593
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
594
|
|
|
|
|
|
|
'plot', # args to original function |
|
595
|
|
|
|
|
|
|
); |
|
596
|
4
|
|
|
|
|
7
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
8
|
|
|
|
|
18
|
|
|
597
|
4
|
50
|
|
|
|
10
|
if ( scalar @undef_args > 0 ) { |
|
598
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
599
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
600
|
|
|
|
|
|
|
} |
|
601
|
|
|
|
|
|
|
my @opt = ( |
|
602
|
4
|
|
|
|
|
15
|
@ax_methods, @plt_methods, @fig_methods, @arg, 'ax', @{ $opt{$current_sub} } |
|
|
4
|
|
|
|
|
148
|
|
|
603
|
|
|
|
|
|
|
); |
|
604
|
4
|
|
|
|
|
11
|
my $plot = $args->{plot}; |
|
605
|
|
|
|
|
|
|
my @bad_opt = grep { |
|
606
|
22
|
|
|
|
|
27
|
my $key = $_; |
|
607
|
22
|
|
|
|
|
60
|
not grep { $_ eq $key } @opt |
|
|
10076
|
|
|
|
|
10472
|
|
|
608
|
4
|
|
|
|
|
6
|
} keys %{$plot}; |
|
|
4
|
|
|
|
|
10
|
|
|
609
|
4
|
50
|
|
|
|
17
|
if ( scalar @bad_opt > 0 ) { |
|
610
|
0
|
|
|
|
|
0
|
p @bad_opt; |
|
611
|
0
|
|
|
|
|
0
|
die "The above arguments aren't defined for $plot->{'plot.type'} using $current_sub"; |
|
612
|
|
|
|
|
|
|
} |
|
613
|
4
|
|
50
|
|
|
22
|
$plot->{orientation} = $plot->{orientation} // 'vertical'; |
|
614
|
4
|
50
|
|
|
|
36
|
if ( $plot->{orientation} !~ m/^(?:horizontal|vertical)$/ ) { |
|
615
|
0
|
|
|
|
|
0
|
die |
|
616
|
|
|
|
|
|
|
"$current_sub needs either \"horizontal\" or \"vertical\", not \"$plot->{orientation}\""; |
|
617
|
|
|
|
|
|
|
} |
|
618
|
4
|
100
|
|
|
|
12
|
if (ref $plot->{data} eq 'ARRAY') { |
|
619
|
1
|
|
|
|
|
3
|
my $tmp = delete $plot->{data}; |
|
620
|
1
|
|
|
|
|
4
|
$plot->{data}{''} = $tmp; |
|
621
|
|
|
|
|
|
|
} |
|
622
|
4
|
|
|
|
|
8
|
my ( @xticks, @key_order ); |
|
623
|
4
|
50
|
|
|
|
10
|
if ( defined $plot->{'key.order'} ) { |
|
624
|
0
|
|
|
|
|
0
|
@key_order = @{ $plot->{'key.order'} }; |
|
|
0
|
|
|
|
|
0
|
|
|
625
|
|
|
|
|
|
|
} else { |
|
626
|
4
|
|
|
|
|
6
|
@key_order = sort keys %{ $plot->{data} }; |
|
|
4
|
|
|
|
|
17
|
|
|
627
|
|
|
|
|
|
|
} |
|
628
|
4
|
|
50
|
|
|
10
|
my $ax = $args->{ax} // ''; |
|
629
|
|
|
|
|
|
|
# $plot->{medians} = $plot->{medians} // 1; # by default, show median values |
|
630
|
4
|
|
50
|
|
|
20
|
$plot->{notch} = $plot->{notch} // 'False'; |
|
631
|
4
|
|
50
|
|
|
14
|
$plot->{showcaps} = $plot->{showcaps} // 'True'; |
|
632
|
4
|
|
50
|
|
|
14
|
$plot->{showfliers} = $plot->{showfliers} // 'True'; |
|
633
|
4
|
|
50
|
|
|
43
|
$plot->{showmeans} = $plot->{showmeans} // 'True'; |
|
634
|
4
|
|
|
|
|
10
|
my $options = "orientation = '$plot->{orientation}'"; |
|
635
|
4
|
|
|
|
|
13
|
foreach my $arg ( 'showcaps', 'showfliers', 'showmeans', 'notch') { |
|
636
|
16
|
|
|
|
|
27
|
$options .= ", $arg = $plot->{$arg}"; |
|
637
|
|
|
|
|
|
|
} |
|
638
|
4
|
|
|
|
|
8
|
foreach my $axis (@{ $plot->{logscale} }) { # x, y |
|
|
4
|
|
|
|
|
13
|
|
|
639
|
0
|
0
|
|
|
|
0
|
if ($axis =~ m/^([^xy])$/) { |
|
640
|
0
|
|
|
|
|
0
|
p $plot->{logscale}; |
|
641
|
0
|
|
|
|
|
0
|
die "only \"x\" and \"y\" are allowed in boxplot, not \"$axis\""; |
|
642
|
|
|
|
|
|
|
} |
|
643
|
0
|
|
|
|
|
0
|
say {$args->{fh}} "ax$ax.set_$axis" . 'scale("log")'; |
|
|
0
|
|
|
|
|
0
|
|
|
644
|
|
|
|
|
|
|
} |
|
645
|
4
|
|
|
|
|
9
|
say { $args->{fh} } 'd = []'; |
|
|
4
|
|
|
|
|
12
|
|
|
646
|
4
|
|
|
|
|
9
|
foreach my $key (@key_order) { |
|
647
|
5
|
|
|
|
|
7
|
@{ $plot->{data}{$key} } = grep { defined } @{ $plot->{data}{$key} }; |
|
|
5
|
|
|
|
|
11
|
|
|
|
61
|
|
|
|
|
65
|
|
|
|
5
|
|
|
|
|
10
|
|
|
648
|
5
|
|
|
|
|
8
|
my @non_numeric = grep {!looks_like_number($_)} @{ $plot->{data}{$key} }; |
|
|
61
|
|
|
|
|
76
|
|
|
|
5
|
|
|
|
|
8
|
|
|
649
|
5
|
50
|
|
|
|
10
|
if (scalar @non_numeric > 0) { |
|
650
|
0
|
|
|
|
|
0
|
p @non_numeric; |
|
651
|
0
|
|
|
|
|
0
|
die "$key has non-numeric values"; |
|
652
|
|
|
|
|
|
|
} |
|
653
|
5
|
|
|
|
|
6
|
say { $args->{fh} } 'd.append([' . join( ',', @{ $plot->{data}{$key} } ) . '])'; |
|
|
5
|
|
|
|
|
8
|
|
|
|
5
|
|
|
|
|
29
|
|
|
654
|
|
|
|
|
|
|
} |
|
655
|
4
|
|
|
|
|
5
|
say { $args->{fh} } "bp = ax$ax.boxplot(d, patch_artist = True, $options)"; |
|
|
4
|
|
|
|
|
13
|
|
|
656
|
4
|
50
|
|
|
|
12
|
if ( defined $plot->{colors} ){ # every hash key should have its own color defined |
|
657
|
|
|
|
|
|
|
# the below code helps to provide better error messages in case I make an error in calling the sub |
|
658
|
|
|
|
|
|
|
my @bad_keys = |
|
659
|
0
|
|
|
|
|
0
|
grep { not defined $plot->{colors}{$_} } keys %{ $plot->{data} }; |
|
|
0
|
|
|
|
|
0
|
|
|
|
0
|
|
|
|
|
0
|
|
|
660
|
0
|
0
|
|
|
|
0
|
if ( scalar @bad_keys > 0 ) { |
|
661
|
0
|
|
|
|
|
0
|
p @bad_keys; |
|
662
|
0
|
|
|
|
|
0
|
die 'the above data keys have no defined color'; |
|
663
|
|
|
|
|
|
|
} |
|
664
|
|
|
|
|
|
|
|
|
665
|
|
|
|
|
|
|
# list of pre-defined colors: https://matplotlib.org/stable/gallery/color/named_colors.html |
|
666
|
0
|
|
|
|
|
0
|
print { $args->{fh} } 'colors = ["' |
|
667
|
0
|
|
|
|
|
0
|
. join( '","', @{ $plot->{colors} }{@key_order} ) . '"]' . "\n"; |
|
|
0
|
|
|
|
|
0
|
|
|
668
|
|
|
|
|
|
|
|
|
669
|
|
|
|
|
|
|
# the above color list will have the same order, via the above hash slice |
|
670
|
0
|
|
|
|
|
0
|
say { $args->{fh} } 'for patch, color in zip(bp["boxes"], colors):'; |
|
|
0
|
|
|
|
|
0
|
|
|
671
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "\tpatch.set_facecolor(color)"; |
|
|
0
|
|
|
|
|
0
|
|
|
672
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "\tpatch.set_edgecolor('black')"; |
|
|
0
|
|
|
|
|
0
|
|
|
673
|
|
|
|
|
|
|
} else { |
|
674
|
4
|
|
|
|
|
6
|
say { $args->{fh} } 'for pc in bp["boxes"]:'; |
|
|
4
|
|
|
|
|
7
|
|
|
675
|
4
|
50
|
|
|
|
8
|
if ( defined $plot->{color} ) { |
|
676
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "\tpc.set_facecolor('$plot->{color}')"; |
|
|
0
|
|
|
|
|
0
|
|
|
677
|
|
|
|
|
|
|
} |
|
678
|
4
|
|
|
|
|
7
|
say { $args->{fh} } "\tpc.set_edgecolor('black')"; |
|
|
4
|
|
|
|
|
7
|
|
|
679
|
|
|
|
|
|
|
} |
|
680
|
4
|
|
|
|
|
10
|
foreach my $key (@key_order) { |
|
681
|
|
|
|
|
|
|
push @xticks, "$key (" |
|
682
|
5
|
|
|
|
|
10
|
. format_commas( scalar @{ $plot->{data}{$key} }, '%.0u' ) . ')'; |
|
|
5
|
|
|
|
|
16
|
|
|
683
|
|
|
|
|
|
|
} |
|
684
|
4
|
50
|
|
|
|
12
|
if ( $plot->{orientation} eq 'vertical' ) { |
|
685
|
4
|
|
|
|
|
4
|
say { $args->{fh} } "ax$ax.set_xticks([" |
|
|
4
|
|
|
|
|
76
|
|
|
686
|
|
|
|
|
|
|
. join( ',', 1 .. scalar @key_order ) . '], ["' |
|
687
|
|
|
|
|
|
|
. join( '","', @xticks ) . '"])'; |
|
688
|
|
|
|
|
|
|
} else { |
|
689
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "ax$ax.set_yticks([" |
|
|
0
|
|
|
|
|
0
|
|
|
690
|
|
|
|
|
|
|
. join( ',', 1 .. scalar @key_order ) . '], ["' |
|
691
|
|
|
|
|
|
|
. join( '","', @xticks ) . '"])'; |
|
692
|
|
|
|
|
|
|
} |
|
693
|
|
|
|
|
|
|
} |
|
694
|
|
|
|
|
|
|
|
|
695
|
|
|
|
|
|
|
sub colored_table_helper { |
|
696
|
3
|
|
|
3
|
0
|
10
|
my ($args) = @_; |
|
697
|
3
|
|
|
|
|
41
|
my $current_sub = (split(/::/,(caller(0))[3]))[-1]; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
698
|
3
|
50
|
|
|
|
20
|
if (ref $args ne 'HASH') { |
|
699
|
0
|
|
|
|
|
0
|
die "args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
700
|
|
|
|
|
|
|
} |
|
701
|
3
|
|
|
|
|
17
|
my @reqd_args = ( |
|
702
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
703
|
|
|
|
|
|
|
'plot', # args to original function |
|
704
|
|
|
|
|
|
|
); |
|
705
|
3
|
|
|
|
|
8
|
my @undef_args = grep {!defined $args->{$_}} @reqd_args; |
|
|
6
|
|
|
|
|
15
|
|
|
706
|
3
|
50
|
|
|
|
9
|
if (scalar @undef_args > 0) { |
|
707
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
708
|
0
|
|
|
|
|
0
|
die "The arguments above are necessary for proper function of $current_sub and weren't defined."; |
|
709
|
|
|
|
|
|
|
} |
|
710
|
|
|
|
|
|
|
# optional args are below |
|
711
|
|
|
|
|
|
|
my @defined_args = (@reqd_args, @ax_methods, @plt_methods, @fig_methods, @arg, |
|
712
|
3
|
|
|
|
|
13
|
'ax', @{ $opt{$current_sub} }); |
|
|
3
|
|
|
|
|
150
|
|
|
713
|
3
|
|
|
|
|
6
|
my @bad_args = grep { my $key = $_; not grep {$_ eq $key} @defined_args} keys %{ $args }; |
|
|
9
|
|
|
|
|
11
|
|
|
|
9
|
|
|
|
|
26
|
|
|
|
4212
|
|
|
|
|
4344
|
|
|
|
3
|
|
|
|
|
11
|
|
|
714
|
3
|
50
|
|
|
|
15
|
if (scalar @bad_args > 0) { |
|
715
|
0
|
|
|
|
|
0
|
p @bad_args; |
|
716
|
0
|
|
|
|
|
0
|
say 'the above arguments are not recognized.'; |
|
717
|
0
|
|
|
|
|
0
|
p @defined_args; |
|
718
|
0
|
|
|
|
|
0
|
die 'The above args are accepted.' |
|
719
|
|
|
|
|
|
|
} |
|
720
|
3
|
|
|
|
|
8
|
my $plot = $args->{plot}; |
|
721
|
3
|
|
50
|
|
|
20
|
$plot->{default_undefined} = $plot->{default_undefined} // 0; |
|
722
|
3
|
|
100
|
|
|
13
|
$plot->{mirror} = $plot->{mirror} // 0; |
|
723
|
|
|
|
|
|
|
# my @data; |
|
724
|
3
|
|
|
|
|
7
|
my (@cols, @rows, %data); |
|
725
|
3
|
100
|
|
|
|
9
|
if (defined $plot->{'col.labels'}) { |
|
726
|
1
|
|
|
|
|
3
|
@cols = @{ $plot->{'col.labels'} }; |
|
|
1
|
|
|
|
|
4
|
|
|
727
|
|
|
|
|
|
|
} else { |
|
728
|
2
|
|
|
|
|
4
|
@cols = sort keys %{ $plot->{data} }; |
|
|
2
|
|
|
|
|
13
|
|
|
729
|
|
|
|
|
|
|
} |
|
730
|
3
|
|
|
|
|
12
|
foreach my $k1 (@cols) { |
|
731
|
9
|
|
|
|
|
8
|
foreach my $k2 (keys %{ $plot->{data}{$k1} }) { |
|
|
9
|
|
|
|
|
22
|
|
|
732
|
27
|
|
|
|
|
36
|
$data{$k1}{$k2} = $plot->{data}{$k1}{$k2}; |
|
733
|
27
|
100
|
|
|
|
46
|
$data{$k2}{$k1} = $data{$k1}{$k2} if $plot->{mirror} > 0; |
|
734
|
|
|
|
|
|
|
} |
|
735
|
|
|
|
|
|
|
} |
|
736
|
3
|
100
|
|
|
|
7
|
if (defined $plot->{'row.labels'}) { |
|
737
|
1
|
|
|
|
|
3
|
@rows = @{ $plot->{'row.labels'} }; |
|
|
1
|
|
|
|
|
3
|
|
|
738
|
|
|
|
|
|
|
} else { |
|
739
|
2
|
|
|
|
|
4
|
@rows = @cols; # the matrix "d" is built with one row per entry of @cols |
|
740
|
|
|
|
|
|
|
} |
|
741
|
3
|
|
|
|
|
6
|
my ($min, $max) = ('inf', '-inf'); |
|
742
|
3
|
|
|
|
|
4
|
say {$args->{fh}} 'd = []'; |
|
|
3
|
|
|
|
|
10
|
|
|
743
|
3
|
|
|
|
|
5
|
say {$args->{fh}} 'import numpy as np'; |
|
|
3
|
|
|
|
|
6
|
|
|
744
|
3
|
|
|
|
|
13
|
foreach my $k1 (@cols) { |
|
745
|
9
|
|
|
|
|
12
|
foreach my $k2 (grep {!defined $data{$k1}{$_}} @cols) { |
|
|
27
|
|
|
|
|
38
|
|
|
746
|
0
|
|
|
|
|
0
|
$data{$k1}{$k2} = 'np.nan';#$plot->{default_undefined}; |
|
747
|
|
|
|
|
|
|
} |
|
748
|
9
|
|
|
|
|
11
|
foreach my $k2 (grep {looks_like_number($data{$k1}{$_})} @cols) { |
|
|
27
|
|
|
|
|
42
|
|
|
749
|
27
|
|
|
|
|
43
|
$min = min($min, $data{$k1}{$k2}); |
|
750
|
27
|
|
|
|
|
38
|
$max = max($max, $data{$k1}{$k2}); |
|
751
|
|
|
|
|
|
|
} |
|
752
|
9
|
|
|
|
|
12
|
say {$args->{fh}} 'd.append([' . join (',', @{ $data{$k1} }{@cols}) . '])'; |
|
|
9
|
|
|
|
|
12
|
|
|
|
9
|
|
|
|
|
53
|
|
|
753
|
|
|
|
|
|
|
} |
|
754
|
3
|
|
33
|
|
|
14
|
$min = $plot->{cb_min} // $min; |
|
755
|
3
|
|
33
|
|
|
9
|
$max = $plot->{cb_max} // $max; |
|
756
|
3
|
|
50
|
|
|
13
|
$plot->{cmap} = $plot->{cmap} // 'gist_rainbow'; |
|
757
|
3
|
|
50
|
|
|
22
|
$plot->{cb_logscale} = $plot->{cb_logscale} // 0; |
|
758
|
3
|
|
50
|
|
|
8
|
my $ax = $args->{ax} // ''; |
|
759
|
3
|
50
|
|
|
|
6
|
say {$args->{fh}} 'from matplotlib import colors' if $plot->{cb_logscale} > 0; |
|
|
0
|
|
|
|
|
0
|
|
|
760
|
3
|
|
100
|
|
|
9
|
$plot->{'undef.color'} = $plot->{'undef.color'} // 'gray'; |
|
761
|
3
|
|
|
|
|
6
|
say {$args->{fh}} 'import matplotlib'; |
|
|
3
|
|
|
|
|
5
|
|
|
762
|
3
|
|
|
|
|
5
|
say {$args->{fh}} "table_cmap = matplotlib.colormaps['$plot->{cmap}'].copy()"; |
|
|
3
|
|
|
|
|
6
|
|
|
763
|
3
|
|
|
|
|
5
|
say {$args->{fh}} 'table_cmap.set_bad("' . $plot->{'undef.color'} . '")'; |
|
|
3
|
|
|
|
|
7
|
|
|
764
|
3
|
|
|
|
|
3
|
say {$args->{fh}} "norm = plt.Normalize($min, $max)"; |
|
|
3
|
|
|
|
|
7
|
|
|
765
|
3
|
|
|
|
|
5
|
say {$args->{fh}} 'datacolors = table_cmap(norm(d))'; |
|
|
3
|
|
|
|
|
5
|
|
|
766
|
3
|
|
|
|
|
4
|
my @options; |
|
767
|
3
|
|
|
|
|
10
|
my %translate = (cb_min => 'vmin', cb_max => 'vmax'); |
|
768
|
3
|
|
|
|
|
19
|
foreach my $opt (grep {defined $plot->{$_}} 'cb_min', 'cb_max'){ |
|
|
6
|
|
|
|
|
10
|
|
|
769
|
0
|
0
|
|
|
|
0
|
unless (looks_like_number( $plot->{$opt} )) { |
|
770
|
0
|
|
|
|
|
0
|
die "\"$opt\" = $plot->{$opt} must be a number"; |
|
771
|
|
|
|
|
|
|
} |
|
772
|
0
|
|
|
|
|
0
|
push @options, "$translate{$opt} = $plot->{$opt}"; |
|
773
|
|
|
|
|
|
|
} |
|
774
|
3
|
|
|
|
|
7
|
my $opt = join (',', @options); |
|
775
|
3
|
50
|
|
|
|
11
|
if (scalar @options > 0) { |
|
776
|
0
|
|
|
|
|
0
|
$opt = ", $opt"; |
|
777
|
|
|
|
|
|
|
} |
|
778
|
3
|
50
|
|
|
|
8
|
if ($plot->{cb_logscale}) { |
|
779
|
0
|
|
|
|
|
0
|
say {$args->{fh}} 'img = ax' . $ax . '.imshow(d, cmap=table_cmap, norm=colors.LogNorm(' . join (',', @options) . '))'; |
|
|
0
|
|
|
|
|
0
|
|
|
780
|
|
|
|
|
|
|
} else { |
|
781
|
3
|
|
|
|
|
5
|
say {$args->{fh}} "img = ax$ax.imshow(d, cmap=table_cmap $opt)"; |
|
|
3
|
|
|
|
|
7
|
|
|
782
|
|
|
|
|
|
|
} |
|
783
|
3
|
|
50
|
|
|
15
|
$plot->{'colorbar.on'} = $plot->{'colorbar.on'} // 1; |
|
784
|
3
|
100
|
|
|
|
8
|
if (defined $plot->{cblabel}) { |
|
785
|
1
|
|
|
|
|
1
|
say {$args->{fh}} "fig.colorbar(img, label = '$plot->{cblabel}')"; |
|
|
1
|
|
|
|
|
3
|
|
|
786
|
|
|
|
|
|
|
} else { |
|
787
|
2
|
50
|
|
|
|
16
|
say {$args->{fh}} "fig.colorbar(img)" if $plot->{'colorbar.on'}; |
|
|
2
|
|
|
|
|
7
|
|
|
788
|
|
|
|
|
|
|
} |
|
789
|
3
|
|
|
|
|
6
|
say {$args->{fh}} 'img.set_visible(False)'; |
|
|
3
|
|
|
|
|
5
|
|
|
790
|
3
|
|
100
|
|
|
14
|
$plot->{'show.numbers'} = $plot->{'show.numbers'} // 0; |
|
791
|
3
|
|
|
|
|
5
|
say {$args->{fh}} 'for ri, row in enumerate(d):'; |
|
|
3
|
|
|
|
|
5
|
|
|
792
|
3
|
|
|
|
|
6
|
say {$args->{fh}} ' for ii, item in enumerate(row):'; |
|
|
3
|
|
|
|
|
5
|
|
|
793
|
3
|
|
|
|
|
6
|
say {$args->{fh}} ' if np.isnan(item):'; |
|
|
3
|
|
|
|
|
5
|
|
|
794
|
3
|
|
|
|
|
4
|
say {$args->{fh}} ' d[ri][ii] = ""'; |
|
|
3
|
|
|
|
|
7
|
|
|
795
|
3
|
100
|
|
|
|
9
|
if ($plot->{'show.numbers'}) { |
|
796
|
1
|
|
|
|
|
2
|
say {$args->{fh}} "table = ax$ax" . '.table(cellText=d, rowLabels=["' . join ('","', @rows) . '"], colLabels = ["' . join ('","', @cols) . '"], cellColours = datacolors, loc = "center", bbox=[0,0,1,1])'; |
|
|
1
|
|
|
|
|
5
|
|
|
797
|
|
|
|
|
|
|
} else { |
|
798
|
2
|
|
|
|
|
3
|
say {$args->{fh}} "table = ax$ax" . '.table(rowLabels=["' . join ('","', @rows) . '"], colLabels = ["' . join ('","', @cols) . '"], cellColours = datacolors, loc = "center", bbox=[0,0,1,1])'; |
|
|
2
|
|
|
|
|
9
|
|
|
799
|
|
|
|
|
|
|
} |
|
800
|
3
|
|
|
|
|
6
|
foreach my $arg (grep {defined $plot->{$_}} ('title')) { |
|
|
3
|
|
|
|
|
9
|
|
|
801
|
0
|
|
|
|
|
0
|
say {$args->{fh}} "ax$ax.$arg('$plot->{$arg}')"; |
|
|
0
|
|
|
|
|
0
|
|
|
802
|
|
|
|
|
|
|
} |
|
803
|
3
|
|
|
|
|
4
|
foreach my $axis (@{ $plot->{logscale} }) { # x, y |
|
|
3
|
|
|
|
|
8
|
|
|
804
|
0
|
0
|
|
|
|
0
|
if ($axis =~ m/^([^xy])$/) { |
|
805
|
0
|
|
|
|
|
0
|
p $plot->{logscale}; |
|
806
|
0
|
|
|
|
|
0
|
die "only \"x\" and \"y\" are allowed in boxplot, not \"$axis\""; |
|
807
|
|
|
|
|
|
|
} |
|
808
|
0
|
|
|
|
|
0
|
say {$args->{fh}} "ax$ax.set_$axis" . 'scale("log")'; |
|
|
0
|
|
|
|
|
0
|
|
|
809
|
|
|
|
|
|
|
} |
|
810
|
|
|
|
|
|
|
# say {$args->{fh}} "fig.clim(vmin = $plot->{cb_min})" if defined $plot->{cb_min}; |
|
811
|
|
|
|
|
|
|
# say {$args->{fh}} "fig.clim(vmax = $plot->{cb_max})" if defined $plot->{cb_max}; |
|
812
|
3
|
|
|
|
|
6
|
foreach my $axis ('x','y') { |
|
813
|
6
|
|
|
|
|
7
|
say {$args->{fh}} "ax$ax.set_${axis}ticks" . '([])'; |
|
|
6
|
|
|
|
|
12
|
|
|
814
|
6
|
|
|
|
|
6
|
say {$args->{fh}} "ax$ax.set_${axis}ticklabels" . '([])'; |
|
|
6
|
|
|
|
|
64
|
|
|
815
|
|
|
|
|
|
|
} |
|
816
|
|
|
|
|
|
|
} |
|
817
|
|
|
|
|
|
|
|
|
818
|
|
|
|
|
|
|
sub hexbin_helper { |
|
819
|
3
|
|
|
3
|
0
|
11
|
my ($args) = @_; |
|
820
|
3
|
|
|
|
|
36
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
821
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
822
|
3
|
50
|
|
|
|
30
|
if ( ref $args ne 'HASH' ) { |
|
823
|
0
|
|
|
|
|
0
|
die "args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
824
|
|
|
|
|
|
|
} |
|
825
|
3
|
|
|
|
|
14
|
my @reqd_args = ( |
|
826
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
827
|
|
|
|
|
|
|
'plot', # args to original function |
|
828
|
|
|
|
|
|
|
); |
|
829
|
3
|
|
|
|
|
7
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
6
|
|
|
|
|
12
|
|
|
830
|
3
|
50
|
|
|
|
8
|
if ( scalar @undef_args > 0 ) { |
|
831
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
832
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
833
|
|
|
|
|
|
|
} |
|
834
|
|
|
|
|
|
|
my @opt = ( |
|
835
|
|
|
|
|
|
|
@ax_methods, @fig_methods, @arg, @plt_methods, |
|
836
|
3
|
|
|
|
|
11
|
'ax', @{ $opt{$current_sub} } |
|
|
3
|
|
|
|
|
200
|
|
|
837
|
|
|
|
|
|
|
); |
|
838
|
3
|
|
|
|
|
6
|
my $plot = $args->{plot}; |
|
839
|
|
|
|
|
|
|
@undef_args = grep { |
|
840
|
19
|
|
|
|
|
22
|
my $key = $_; |
|
841
|
19
|
|
|
|
|
55
|
not grep { $_ eq $key } @opt |
|
|
8930
|
|
|
|
|
9295
|
|
|
842
|
3
|
|
|
|
|
6
|
} keys %{$plot}; |
|
|
3
|
|
|
|
|
8
|
|
|
843
|
3
|
50
|
|
|
|
14
|
if ( scalar @undef_args > 0 ) { |
|
844
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
845
|
0
|
|
|
|
|
0
|
die "The above arguments aren't defined for $plot->{'plot.type'} in $current_sub"; |
|
846
|
|
|
|
|
|
|
} |
|
847
|
3
|
|
50
|
|
|
17
|
$plot->{cb_logscale} = $plot->{cb_logscale} // 0; |
|
848
|
3
|
|
50
|
|
|
12
|
$plot->{marginals} = $plot->{marginals} // 0; |
|
849
|
3
|
|
50
|
|
|
16
|
$plot->{xbins} = $plot->{xbins} // 15; |
|
850
|
3
|
|
50
|
|
|
19
|
$plot->{ybins} = $plot->{ybins} // 15; |
|
851
|
3
|
|
|
|
|
7
|
$plot->{xbins} = int $plot->{xbins}; |
|
852
|
3
|
|
|
|
|
3
|
$plot->{ybins} = int $plot->{ybins}; |
|
853
|
3
|
50
|
33
|
|
|
20
|
if ( ( $plot->{xbins} == 0 ) || ( $plot->{ybins} == 0 ) ) { |
|
854
|
0
|
|
|
|
|
0
|
p $plot; |
|
855
|
0
|
|
|
|
|
0
|
die "# of bins cannot be 0 in $current_sub"; |
|
856
|
|
|
|
|
|
|
} |
|
857
|
3
|
|
|
|
|
4
|
my @keys; |
|
858
|
3
|
100
|
|
|
|
10
|
if ( defined $plot->{'key.order'} ) { |
|
859
|
1
|
|
|
|
|
2
|
@keys = @{ $plot->{'key.order'} }; |
|
|
1
|
|
|
|
|
4
|
|
|
860
|
|
|
|
|
|
|
} else { |
|
861
|
2
|
|
|
|
|
2
|
@keys = sort keys %{ $plot->{data} }; |
|
|
2
|
|
|
|
|
11
|
|
|
862
|
|
|
|
|
|
|
} |
|
863
|
3
|
50
|
|
|
|
9
|
if ( scalar @keys != 2 ) { |
|
864
|
0
|
|
|
|
|
0
|
p @keys; |
|
865
|
0
|
|
|
|
|
0
|
die "There must be exactly 2 keys for $current_sub"; |
|
866
|
|
|
|
|
|
|
} |
|
867
|
3
|
|
|
|
|
4
|
my $n_points = scalar @{ $plot->{data}{ $keys[0] } }; |
|
|
3
|
|
|
|
|
6
|
|
|
868
|
3
|
50
|
|
|
|
5
|
if ( scalar @{ $plot->{data}{ $keys[1] } } != $n_points ) { |
|
|
3
|
|
|
|
|
8
|
|
|
869
|
0
|
|
|
|
|
0
|
say "\"$keys[0]\" has $n_points points."; |
|
870
|
|
|
|
|
|
|
say "\"$keys[1]\" has " |
|
871
|
0
|
|
|
|
|
0
|
. scalar @{ $plot->{data}{ $keys[1] } } |
|
|
0
|
|
|
|
|
0
|
|
|
872
|
|
|
|
|
|
|
. " points."; |
|
873
|
0
|
|
|
|
|
0
|
die 'The length of both keys must be equal.'; |
|
874
|
|
|
|
|
|
|
} |
|
875
|
3
|
|
33
|
|
|
13
|
$plot->{xlabel} = $plot->{xlabel} // $keys[0]; |
|
876
|
3
|
|
33
|
|
|
10
|
$plot->{ylabel} = $plot->{ylabel} // $keys[1]; |
|
877
|
3
|
|
50
|
|
|
22
|
$plot->{cmap} = $plot->{cmap} // 'gist_rainbow'; |
|
878
|
3
|
|
|
|
|
11
|
my $options = |
|
879
|
|
|
|
|
|
|
", gridsize = ($plot->{xbins}, $plot->{ybins}), cmap = '$plot->{cmap}'" |
|
880
|
|
|
|
|
|
|
; # these args go to the plt.hist call |
|
881
|
3
|
50
|
|
|
|
6
|
if ( $plot->{cb_logscale} ) { |
|
882
|
0
|
|
|
|
|
0
|
say { $args->{fh} } 'from matplotlib.colors import LogNorm'; |
|
|
0
|
|
|
|
|
0
|
|
|
883
|
0
|
|
|
|
|
0
|
$options .= ', norm = LogNorm()'; |
|
884
|
|
|
|
|
|
|
} |
|
885
|
3
|
|
|
|
|
6
|
foreach my $opt ( |
|
886
|
15
|
|
|
|
|
25
|
grep { defined $plot->{$_} } ('xrange', 'yrange', 'vmin', 'vmax', 'mincnt') |
|
887
|
|
|
|
|
|
|
) |
|
888
|
|
|
|
|
|
|
{ |
|
889
|
0
|
|
|
|
|
0
|
$options .= ", $opt = $plot->{$opt}"; |
|
890
|
|
|
|
|
|
|
} |
|
891
|
3
|
|
|
|
|
4
|
foreach my $opt (grep {defined $plot->{$_} } ('xscale.hexbin', 'yscale.hexbin')) { |
|
|
6
|
|
|
|
|
11
|
|
|
892
|
0
|
0
|
0
|
|
|
0
|
if (($plot->{$opt} ne 'log') && ($plot->{$opt} ne 'linear')) { |
|
893
|
0
|
|
|
|
|
0
|
die "\"$opt\" is neither \"log\" nor \"linear\""; |
|
894
|
|
|
|
|
|
|
} |
|
895
|
0
|
|
|
|
|
0
|
my $opth = $opt; |
|
896
|
0
|
|
|
|
|
0
|
$opth =~ s/\.\w+$//; |
|
897
|
0
|
|
|
|
|
0
|
$options .= ", $opth = '$plot->{$opt}'"; |
|
898
|
|
|
|
|
|
|
} |
|
899
|
3
|
50
|
33
|
|
|
13
|
if ((defined $plot->{marginals}) && ($plot->{marginals} > 0)) { |
|
900
|
0
|
|
|
|
|
0
|
$options .= ', marginals = True'; |
|
901
|
|
|
|
|
|
|
} |
|
902
|
3
|
|
|
|
|
6
|
say { $args->{fh} } 'x = [' |
|
903
|
3
|
|
|
|
|
4
|
. join( ',', @{ $plot->{data}{ $keys[0] } } ) . ']'; |
|
|
3
|
|
|
|
|
91
|
|
|
904
|
3
|
|
|
|
|
5
|
say { $args->{fh} } 'y = [' |
|
905
|
3
|
|
|
|
|
6
|
. join( ',', @{ $plot->{data}{ $keys[1] } } ) . ']'; |
|
|
3
|
|
|
|
|
83
|
|
|
906
|
3
|
|
50
|
|
|
10
|
my $ax = $args->{ax} // ''; |
|
907
|
3
|
|
|
|
|
3
|
say { $args->{fh} } "im$ax = ax$ax.hexbin(x, y $options)\n"; |
|
|
3
|
|
|
|
|
9
|
|
|
908
|
3
|
|
|
|
|
52
|
my $opts = ''; |
|
909
|
3
|
|
|
|
|
6
|
foreach my $o (grep {defined $plot->{$_}} ('cblocation', 'cborientation')) { #str; cblabel is handled separately below |
|
|
6
|
|
|
|
|
12
|
|
|
910
|
0
|
|
|
|
|
0
|
my $mpl_opt = $o; |
|
911
|
0
|
|
|
|
|
0
|
$mpl_opt =~ s/^cb//; |
|
912
|
0
|
|
|
|
|
0
|
$opts .= ", $mpl_opt = '$plot->{$o}'"; |
|
913
|
|
|
|
|
|
|
} |
|
914
|
3
|
|
|
|
|
5
|
foreach my $o (grep {defined $plot->{$_}} ('cbdrawedges', 'cbpad')) { # numeric |
|
|
6
|
|
|
|
|
10
|
|
|
915
|
0
|
0
|
|
|
|
0
|
die "$o = $plot->{$o} must be numeric" unless (looks_like_number($plot->{$o})); |
|
916
|
0
|
|
|
|
|
0
|
my $mpl_opt = $o; |
|
917
|
0
|
|
|
|
|
0
|
$mpl_opt =~ s/^cb//; |
|
918
|
0
|
|
|
|
|
0
|
$opts .= ", $mpl_opt = $plot->{$o}"; |
|
919
|
|
|
|
|
|
|
} |
|
920
|
3
|
|
50
|
|
|
9
|
$plot->{'colorbar.on'} = $plot->{'colorbar.on'} // 1; |
|
921
|
3
|
50
|
33
|
|
|
16
|
if (($plot->{'colorbar.on'}) && (defined $plot->{'shared.colorbar'})) { |
|
922
|
0
|
|
|
|
|
0
|
my @ax = map {"ax$_"} @{ $plot->{'shared.colorbar'} }; |
|
|
0
|
|
|
|
|
0
|
|
|
|
0
|
|
|
|
|
0
|
|
|
923
|
0
|
|
|
|
|
0
|
$opts .= ', ax = [' . join (',', @ax) . '] '; |
|
924
|
|
|
|
|
|
|
} |
|
925
|
3
|
50
|
|
|
|
7
|
if ( defined $plot->{cblabel} ) { |
|
926
|
|
|
|
|
|
|
write_data({ |
|
927
|
|
|
|
|
|
|
data => $plot->{cblabel}, |
|
928
|
|
|
|
|
|
|
fh => $args->{fh}, |
|
929
|
0
|
|
|
|
|
0
|
name => 'cblabel', |
|
930
|
|
|
|
|
|
|
}); |
|
931
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "plt.colorbar(im$ax, label = cblabel $opts)"; |
|
|
0
|
|
|
|
|
0
|
|
|
932
|
|
|
|
|
|
|
} else { |
|
933
|
3
|
|
|
|
|
3
|
say { $args->{fh} } "plt.colorbar(im$ax, label = 'Density' $opts)"; |
|
|
3
|
|
|
|
|
52
|
|
|
934
|
|
|
|
|
|
|
} |
|
935
|
|
|
|
|
|
|
} |
|
936
|
|
|
|
|
|
|
|
|
937
|
|
|
|
|
|
|
sub format_commas |
|
938
|
|
|
|
|
|
|
{ #($n, $format = '.%02d') { # https://stackoverflow.com/questions/33442240/perl-printf-to-use-commas-as-thousands-separator |
|
939
|
|
|
|
|
|
|
# $format should be '%.0u' for integers |
|
940
|
10
|
|
|
10
|
0
|
20
|
my ( $n, $format ) = @_; |
|
941
|
10
|
50
|
|
|
|
36
|
$format = '.%02d' if not defined $format; |
|
942
|
|
|
|
|
|
|
return |
|
943
|
10
|
|
|
|
|
122
|
reverse( join( ",", unpack( "(A3)*", reverse int($n) ) ) ) |
|
944
|
|
|
|
|
|
|
. sprintf( $format, int( 100 * ( .005 + ( $n - int($n) ) ) ) ); |
|
945
|
|
|
|
|
|
|
} |
|
946
|
|
|
|
|
|
|
|
|
947
|
|
|
|
|
|
|
sub hist_helper { |
|
948
|
25
|
|
|
25
|
0
|
49
|
my ($args) = @_; |
|
949
|
25
|
|
|
|
|
176
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
950
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
951
|
25
|
50
|
|
|
|
521
|
if ( ref $args ne 'HASH' ) { |
|
952
|
0
|
|
|
|
|
0
|
die |
|
953
|
|
|
|
|
|
|
"args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
954
|
|
|
|
|
|
|
} |
|
955
|
25
|
|
|
|
|
117
|
my @reqd_args = ( |
|
956
|
|
|
|
|
|
|
'ax', # used for multiple plots |
|
957
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
958
|
|
|
|
|
|
|
'plot', # args to original function |
|
959
|
|
|
|
|
|
|
); |
|
960
|
25
|
|
|
|
|
43
|
my @undef = grep { !defined $args->{$_} } @reqd_args; |
|
|
75
|
|
|
|
|
122
|
|
|
961
|
25
|
50
|
|
|
|
48
|
if ( scalar @undef > 0 ) { |
|
962
|
0
|
|
|
|
|
0
|
p @undef; |
|
963
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
964
|
|
|
|
|
|
|
} |
|
965
|
25
|
|
|
|
|
81
|
my @opt = (@ax_methods, @plt_methods, @fig_methods, @arg, 'ax', @{ $opt{$current_sub} }); |
|
|
25
|
|
|
|
|
1033
|
|
|
966
|
25
|
|
|
|
|
51
|
my $plot = $args->{plot}; |
|
967
|
|
|
|
|
|
|
@undef = grep { |
|
968
|
90
|
|
|
|
|
99
|
my $key = $_; |
|
969
|
90
|
|
|
|
|
232
|
not grep { $_ eq $key } @opt |
|
|
41130
|
|
|
|
|
41784
|
|
|
970
|
25
|
|
|
|
|
33
|
} keys %{$plot}; |
|
|
25
|
|
|
|
|
60
|
|
|
971
|
25
|
50
|
|
|
|
81
|
if ( scalar @undef > 0 ) { |
|
972
|
0
|
|
|
|
|
0
|
p @undef; |
|
973
|
0
|
|
|
|
|
0
|
die "The above arguments aren't defined for $plot->{'plot.type'}"; |
|
974
|
|
|
|
|
|
|
} |
|
975
|
25
|
|
|
|
|
42
|
my $options = ''; # these args go to the plt.hist call |
|
976
|
25
|
|
50
|
|
|
121
|
$plot->{alpha} = $plot->{alpha} // 0.5; |
|
977
|
25
|
|
|
|
|
46
|
foreach my $arg ( grep { defined $plot->{$_} } ( 'bins', 'orientation' ) ) { |
|
|
50
|
|
|
|
|
98
|
|
|
978
|
1
|
50
|
|
|
|
6
|
next if ref $plot->{$arg} eq 'HASH'; # set-specific setting exists |
|
979
|
1
|
|
|
|
|
2
|
my $ref = ref $plot->{$arg}; |
|
980
|
1
|
50
|
|
|
|
5
|
if ( $ref eq '' ) { # single color |
|
|
|
50
|
|
|
|
|
|
|
981
|
0
|
0
|
|
|
|
0
|
if ( $plot->{$arg} =~ m/^[A-Za-z]+$/ ) { # "Red" needs quotes |
|
982
|
0
|
|
|
|
|
0
|
$options .= ", $arg = '$plot->{$arg}'"; |
|
983
|
|
|
|
|
|
|
} else { # I'm assuming numeric |
|
984
|
0
|
|
|
|
|
0
|
$options .= ", $arg = $plot->{$arg}"; |
|
985
|
|
|
|
|
|
|
} |
|
986
|
|
|
|
|
|
|
} elsif ( $ref eq 'ARRAY' ) { |
|
987
|
1
|
|
|
|
|
3
|
$options .= ", $arg = [" . join( ',', @{ $plot->{$arg} } ) . ']'; |
|
|
1
|
|
|
|
|
6
|
|
|
988
|
|
|
|
|
|
|
} else { |
|
989
|
0
|
|
|
|
|
0
|
p $plot; |
|
990
|
0
|
|
|
|
|
0
|
die "$ref for $arg isn't acceptable"; |
|
991
|
|
|
|
|
|
|
} |
|
992
|
|
|
|
|
|
|
} |
|
993
|
25
|
|
|
|
|
38
|
foreach my $axis (@{ $plot->{logscale} }) { # x, y |
|
|
25
|
|
|
|
|
55
|
|
|
994
|
0
|
0
|
|
|
|
0
|
if ($axis =~ m/^([^xy])$/) { |
|
995
|
0
|
|
|
|
|
0
|
p $plot->{logscale}; |
|
996
|
0
|
|
|
|
|
0
|
die "only \"x\" and \"y\" are allowed in boxplot, not \"$axis\""; |
|
997
|
|
|
|
|
|
|
} |
|
998
|
0
|
|
|
|
|
0
|
say {$args->{fh}} "ax$args->{ax}.set_$axis" . 'scale("log")'; |
|
|
0
|
|
|
|
|
0
|
|
|
999
|
|
|
|
|
|
|
} |
|
1000
|
25
|
100
|
|
|
|
58
|
if (ref $plot->{data} eq 'ARRAY') { |
|
1001
|
1
|
|
|
|
|
3
|
my $tmp = delete $plot->{data}; |
|
1002
|
1
|
|
|
|
|
3
|
$plot->{data}{A} = $tmp; |
|
1003
|
|
|
|
|
|
|
} |
|
1004
|
25
|
100
|
|
|
|
28
|
if (scalar keys %{ $plot->{data} } > 1) { |
|
|
25
|
|
|
|
|
56
|
|
|
1005
|
1
|
|
50
|
|
|
5
|
$plot->{'show.legend'} = $plot->{'show.legend'} // 1; |
|
1006
|
|
|
|
|
|
|
} else { |
|
1007
|
24
|
|
100
|
|
|
86
|
$plot->{'show.legend'} = $plot->{'show.legend'} // 0; |
|
1008
|
|
|
|
|
|
|
} |
|
1009
|
25
|
|
|
|
|
30
|
foreach my $set ( sort keys %{ $plot->{data} } ) { |
|
|
25
|
|
|
|
|
61
|
|
|
1010
|
26
|
|
|
|
|
49
|
my @non_numeric = grep {not looks_like_number($_)} @{ $plot->{data}{$set} }; |
|
|
165
|
|
|
|
|
229
|
|
|
|
26
|
|
|
|
|
41
|
|
|
1011
|
26
|
50
|
|
|
|
45
|
if (scalar @non_numeric > 0) { |
|
1012
|
0
|
|
|
|
|
0
|
p @non_numeric; |
|
1013
|
0
|
|
|
|
|
0
|
die "$set has non-numeric values; which for hist must be numeric"; |
|
1014
|
|
|
|
|
|
|
} |
|
1015
|
26
|
|
|
|
|
37
|
my $set_options = ''; |
|
1016
|
26
|
|
|
|
|
32
|
foreach |
|
1017
|
52
|
|
|
|
|
77
|
my $arg ( grep { ref $plot->{$_} eq 'HASH' } ( 'bins', 'color' ) ) |
|
1018
|
|
|
|
|
|
|
{ |
|
1019
|
0
|
0
|
|
|
|
0
|
next unless defined $plot->{$arg}{$set}; |
|
1020
|
0
|
0
|
|
|
|
0
|
if ( $plot->{$arg}{$set} =~ m/^[A-Za-z]+$/ ) { # "Red" needs quotes |
|
1021
|
0
|
|
|
|
|
0
|
$set_options .= ", $arg = '$plot->{$arg}{$set}'"; |
|
1022
|
|
|
|
|
|
|
} else { # I'm assuming numeric; "10" doesn't need quotes |
|
1023
|
0
|
|
|
|
|
0
|
$set_options .= ", $arg = $plot->{$arg}{$set}"; |
|
1024
|
|
|
|
|
|
|
} |
|
1025
|
|
|
|
|
|
|
} |
|
1026
|
26
|
|
|
|
|
43
|
say {$args->{fh}} 'd = [' . join (',', @{ $plot->{data}{$set} }) . ']'; |
|
|
26
|
|
|
|
|
45
|
|
|
|
26
|
|
|
|
|
128
|
|
|
1027
|
26
|
100
|
|
|
|
49
|
if ($plot->{'show.legend'}) { |
|
1028
|
2
|
|
|
|
|
3
|
say { $args->{fh} } "ax$args->{ax}.hist(d, alpha = $plot->{alpha}, label = '$set' $options $set_options)"; |
|
|
2
|
|
|
|
|
24
|
|
|
1029
|
|
|
|
|
|
|
} else { |
|
1030
|
24
|
|
|
|
|
25
|
say { $args->{fh} } "ax$args->{ax}.hist(d, alpha = $plot->{alpha} $options $set_options)"; |
|
|
24
|
|
|
|
|
490
|
|
|
1031
|
|
|
|
|
|
|
} |
|
1032
|
|
|
|
|
|
|
} |
|
1033
|
|
|
|
|
|
|
} |
|
1034
|
|
|
|
|
|
|
|
|
1035
|
|
|
|
|
|
|
sub hist2d_helper { |
|
1036
|
7
|
|
|
7
|
0
|
13
|
my ($args) = @_; |
|
1037
|
7
|
|
|
|
|
81
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
1038
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
1039
|
7
|
50
|
|
|
|
39
|
if ( ref $args ne 'HASH' ) { |
|
1040
|
0
|
|
|
|
|
0
|
die "args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
1041
|
|
|
|
|
|
|
} |
|
1042
|
7
|
|
|
|
|
22
|
my @reqd_args = ( |
|
1043
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
1044
|
|
|
|
|
|
|
'plot', # args to original function |
|
1045
|
|
|
|
|
|
|
); |
|
1046
|
7
|
|
|
|
|
14
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
14
|
|
|
|
|
29
|
|
|
1047
|
7
|
50
|
|
|
|
16
|
if ( scalar @undef_args > 0 ) { |
|
1048
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1049
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
1050
|
|
|
|
|
|
|
} |
|
1051
|
7
|
|
|
|
|
25
|
my @opt = (@ax_methods, @plt_methods, @fig_methods, @arg, 'ax', @{ $opt{$current_sub} }); |
|
|
7
|
|
|
|
|
291
|
|
|
1052
|
7
|
|
|
|
|
18
|
my $plot = $args->{plot}; |
|
1053
|
|
|
|
|
|
|
@undef_args = grep { |
|
1054
|
49
|
|
|
|
|
70
|
my $key = $_; |
|
1055
|
49
|
|
|
|
|
136
|
not grep { $_ eq $key } @opt |
|
|
23275
|
|
|
|
|
24067
|
|
|
1056
|
7
|
|
|
|
|
9
|
} keys %{$plot}; |
|
|
7
|
|
|
|
|
38
|
|
|
1057
|
7
|
50
|
|
|
|
32
|
if ( scalar @undef_args > 0 ) { |
|
1058
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1059
|
0
|
|
|
|
|
0
|
die |
|
1060
|
|
|
|
|
|
|
"The above arguments aren't defined for $plot->{'plot.type'} in $current_sub"; |
|
1061
|
|
|
|
|
|
|
} |
|
1062
|
7
|
|
100
|
|
|
35
|
$plot->{cb_logscale} = $plot->{cb_logscale} // 0; |
|
1063
|
7
|
|
100
|
|
|
31
|
$plot->{'show.colorbar'} = $plot->{'show.colorbar'} // 1; |
|
1064
|
7
|
|
50
|
|
|
36
|
$plot->{xbins} = int( $plot->{xbins} // 15 ); |
|
1065
|
7
|
|
50
|
|
|
26
|
$plot->{ybins} = int( $plot->{ybins} // 15 ); |
|
1066
|
7
|
50
|
33
|
|
|
26
|
if ( ( $plot->{xbins} == 0 ) || ( $plot->{ybins} == 0 ) ) { |
|
1067
|
0
|
|
|
|
|
0
|
p $plot; |
|
1068
|
0
|
|
|
|
|
0
|
die "# of bins cannot be 0 in $current_sub"; |
|
1069
|
|
|
|
|
|
|
} |
|
1070
|
7
|
|
|
|
|
12
|
my @keys; |
|
1071
|
7
|
50
|
|
|
|
15
|
if ( defined $plot->{'key.order'} ) { |
|
1072
|
0
|
|
|
|
|
0
|
@keys = @{ $plot->{'key.order'} }; |
|
|
0
|
|
|
|
|
0
|
|
|
1073
|
|
|
|
|
|
|
} else { |
|
1074
|
7
|
|
|
|
|
8
|
@keys = sort keys %{ $plot->{data} }; |
|
|
7
|
|
|
|
|
58
|
|
|
1075
|
|
|
|
|
|
|
} |
|
1076
|
7
|
50
|
|
|
|
16
|
if ( scalar @keys != 2 ) { |
|
1077
|
0
|
|
|
|
|
0
|
p @keys; |
|
1078
|
0
|
|
|
|
|
0
|
die "There must be exactly 2 keys for $current_sub"; |
|
1079
|
|
|
|
|
|
|
} |
|
1080
|
7
|
|
|
|
|
9
|
my $n_points = scalar @{ $plot->{data}{ $keys[0] } }; |
|
|
7
|
|
|
|
|
17
|
|
|
1081
|
7
|
50
|
|
|
|
9
|
if ( scalar @{ $plot->{data}{ $keys[1] } } != $n_points ) { |
|
|
7
|
|
|
|
|
15
|
|
|
1082
|
0
|
|
|
|
|
0
|
say "$keys[0] has $n_points points."; |
|
1083
|
|
|
|
|
|
|
say "$keys[1] has " |
|
1084
|
0
|
|
|
|
|
0
|
. scalar @{ $plot->{data}{ $keys[1] } } |
|
|
0
|
|
|
|
|
0
|
|
|
1085
|
|
|
|
|
|
|
. " points."; |
|
1086
|
0
|
|
|
|
|
0
|
die 'The length of both keys must be equal.'; |
|
1087
|
|
|
|
|
|
|
} |
|
1088
|
7
|
|
33
|
|
|
33
|
$plot->{xlabel} = $plot->{xlabel} // $keys[0]; |
|
1089
|
7
|
|
33
|
|
|
31
|
$plot->{ylabel} = $plot->{ylabel} // $keys[1]; |
|
1090
|
7
|
|
100
|
|
|
23
|
$plot->{cmap} = $plot->{cmap} // 'gist_rainbow'; |
|
1091
|
7
|
|
|
|
|
18
|
my $options = ", cmap = '$plot->{cmap}'"; # these args go to the plt.hist call |
|
1092
|
7
|
100
|
|
|
|
17
|
if ( $plot->{cb_logscale} ) { |
|
1093
|
1
|
|
|
|
|
2
|
say {$args->{fh}} 'from matplotlib.colors import LogNorm'; |
|
|
1
|
|
|
|
|
4
|
|
|
1094
|
|
|
|
|
|
|
# prevents "ValueError: Passing a Normalize instance simultaneously with vmin/vmax is not supported. Please pass vmin/vmax directly to the norm when creating it" |
|
1095
|
1
|
|
|
|
|
3
|
my @logNorm_opt; |
|
1096
|
1
|
|
|
|
|
2
|
foreach my $arg (grep {defined $plot->{$_}} ('vmin', 'vmax')) { |
|
|
2
|
|
|
|
|
4
|
|
|
1097
|
0
|
0
|
|
|
|
0
|
if (not looks_like_number($plot->{$arg})) { |
|
1098
|
0
|
|
|
|
|
0
|
die "$arg must be numeric for $current_sub, but was given \"$plot->{$arg}\""; |
|
1099
|
|
|
|
|
|
|
} |
|
1100
|
0
|
|
|
|
|
0
|
push @logNorm_opt, "$arg = $plot->{$arg}"; |
|
1101
|
0
|
|
|
|
|
0
|
delete $plot->{$arg}; |
|
1102
|
|
|
|
|
|
|
} |
|
1103
|
1
|
|
|
|
|
3
|
$options .= ', norm = LogNorm(' . join (',', @logNorm_opt) . ')'; |
|
1104
|
|
|
|
|
|
|
} |
|
1105
|
7
|
|
|
|
|
12
|
foreach my $opt ( grep { defined $plot->{$_} } ( 'cmin', 'cmax', 'density', 'vmin', 'vmax' ) ) |
|
|
35
|
|
|
|
|
50
|
|
|
1106
|
|
|
|
|
|
|
{ |
|
1107
|
2
|
|
|
|
|
5
|
$options .= ", $opt = $plot->{$opt}"; |
|
1108
|
|
|
|
|
|
|
} |
|
1109
|
7
|
|
|
|
|
9
|
my @bad_indices; |
|
1110
|
7
|
|
|
|
|
11
|
my $bad_pts = 0; |
|
1111
|
7
|
|
|
|
|
12
|
foreach my $i (0,1) { |
|
1112
|
14
|
|
|
|
|
29
|
@{ $bad_indices[$i] } = grep {not defined $plot->{data}{$keys[$i]}[$_]} 0..$n_points-1; |
|
|
14
|
|
|
|
|
26
|
|
|
|
420
|
|
|
|
|
490
|
|
|
1113
|
14
|
|
|
|
|
22
|
$bad_pts += scalar @{ $bad_indices[$i] }; |
|
|
14
|
|
|
|
|
24
|
|
|
1114
|
|
|
|
|
|
|
} |
|
1115
|
7
|
50
|
|
|
|
15
|
if ($bad_pts > 0) { |
|
1116
|
0
|
|
|
|
|
0
|
say STDERR "the above args have the following indices undefined ($n_points total)"; |
|
1117
|
0
|
|
|
|
|
0
|
p @bad_indices; |
|
1118
|
0
|
|
|
|
|
0
|
die "Cannot proceed as there are $bad_pts undefined points."; |
|
1119
|
|
|
|
|
|
|
} |
|
1120
|
7
|
|
|
|
|
15
|
foreach my $i (0,1) { |
|
1121
|
14
|
|
|
|
|
22
|
@{ $bad_indices[$i] } = grep {not looks_like_number($plot->{data}{$keys[$i]}[$_])} 0..$n_points-1; |
|
|
14
|
|
|
|
|
16
|
|
|
|
420
|
|
|
|
|
602
|
|
|
1122
|
14
|
|
|
|
|
22
|
$bad_pts += scalar @{ $bad_indices[$i] }; |
|
|
14
|
|
|
|
|
16
|
|
|
1123
|
|
|
|
|
|
|
} |
|
1124
|
7
|
50
|
|
|
|
17
|
if ($bad_pts > 0) { |
|
1125
|
0
|
|
|
|
|
0
|
p $args; |
|
1126
|
0
|
|
|
|
|
0
|
say STDERR "the above args have the following indices non-numeric ($n_points total)"; |
|
1127
|
0
|
|
|
|
|
0
|
p @bad_indices; |
|
1128
|
0
|
|
|
|
|
0
|
die "Cannot proceed as there are $bad_pts non-numeric points."; |
|
1129
|
|
|
|
|
|
|
} |
|
1130
|
7
|
|
|
|
|
14
|
say { $args->{fh} } 'x = [' |
|
1131
|
7
|
|
|
|
|
8
|
. join( ',', @{ $plot->{data}{ $keys[0] } } ) . ']'; |
|
|
7
|
|
|
|
|
181
|
|
|
1132
|
7
|
|
33
|
|
|
21
|
$plot->{xmin} = $plot->{xmin} // min( @{ $plot->{data}{ $keys[0] } } ); |
|
|
7
|
|
|
|
|
33
|
|
|
1133
|
7
|
|
33
|
|
|
17
|
$plot->{xmax} = $plot->{xmax} // max( @{ $plot->{data}{ $keys[0] } } ); |
|
|
7
|
|
|
|
|
26
|
|
|
1134
|
7
|
|
|
|
|
10
|
say { $args->{fh} } 'y = [' |
|
1135
|
7
|
|
|
|
|
10
|
. join( ',', @{ $plot->{data}{ $keys[1] } } ) . ']'; |
|
|
7
|
|
|
|
|
178
|
|
|
1136
|
7
|
|
33
|
|
|
17
|
$plot->{ymin} = $plot->{ymin} // min( @{ $plot->{data}{ $keys[1] } } ); |
|
|
7
|
|
|
|
|
28
|
|
|
1137
|
7
|
|
33
|
|
|
15
|
$plot->{ymax} = $plot->{ymax} // max( @{ $plot->{data}{ $keys[1] } } ); |
|
|
7
|
|
|
|
|
23
|
|
|
1138
|
7
|
|
50
|
|
|
21
|
my $ax = $args->{ax} // ''; |
|
1139
|
|
|
|
|
|
|
# the range argument ensures that there are no empty parts of the plot |
|
1140
|
7
|
|
|
|
|
27
|
my $range = ", range = [($plot->{xmin}, $plot->{xmax}), ($plot->{ymin}, $plot->{ymax})]"; |
|
1141
|
|
|
|
|
|
|
# logscale complications |
|
1142
|
7
|
|
|
|
|
9
|
say {$args->{fh}} 'import numpy as np'; |
|
|
7
|
|
|
|
|
18
|
|
|
1143
|
7
|
50
|
|
|
|
14
|
if ($plot->{logscale}) { |
|
1144
|
0
|
|
|
|
|
0
|
my %linear_axes = ('x' => 1, 'y' => 1); |
|
1145
|
0
|
|
|
|
|
0
|
foreach my $axis (@{ $plot->{logscale} }) { # x, y |
|
|
0
|
|
|
|
|
0
|
|
|
1146
|
0
|
0
|
|
|
|
0
|
if ($axis =~ m/^([^xy])$/) { |
|
1147
|
0
|
|
|
|
|
0
|
p $plot->{logscale}; |
|
1148
|
0
|
|
|
|
|
0
|
die "only \"x\" and \"y\" are allowed in boxplot, not \"$axis\""; |
|
1149
|
|
|
|
|
|
|
} |
|
1150
|
0
|
|
|
|
|
0
|
say {$args->{fh}} "ax$ax.set_$axis" . 'scale("log")'; |
|
|
0
|
|
|
|
|
0
|
|
|
1151
|
0
|
|
|
|
|
0
|
my $min = $plot->{$axis . 'min'}; |
|
1152
|
0
|
|
|
|
|
0
|
my $max = $plot->{$axis . 'max'}; |
|
1153
|
0
|
|
|
|
|
0
|
my $key = "${axis}bins"; |
|
1154
|
0
|
|
|
|
|
0
|
say {$args->{fh}} "${axis}bins = np.logspace(np.log10($min), np.log10($max), $plot->{$key})"; |
|
|
0
|
|
|
|
|
0
|
|
|
1155
|
0
|
|
|
|
|
0
|
delete $linear_axes{$axis}; # so that I don't make a linear space for it |
|
1156
|
|
|
|
|
|
|
} |
|
1157
|
0
|
|
|
|
|
0
|
foreach my $axis ( keys %linear_axes ) { |
|
1158
|
0
|
|
|
|
|
0
|
my $min = $plot->{$axis . 'min'}; |
|
1159
|
0
|
|
|
|
|
0
|
my $max = $plot->{$axis . 'max'}; |
|
1160
|
0
|
|
|
|
|
0
|
my $key = "${axis}bins"; |
|
1161
|
0
|
|
|
|
|
0
|
say {$args->{fh}} "${axis}bins = np.linspace($min, $max, $plot->{$key})"; |
|
|
0
|
|
|
|
|
0
|
|
|
1162
|
|
|
|
|
|
|
} |
|
1163
|
0
|
|
|
|
|
0
|
$options = ", bins = [xbins, ybins] $options"; |
|
1164
|
|
|
|
|
|
|
} else { |
|
1165
|
7
|
|
|
|
|
20
|
$options = ", ($plot->{xbins}, $plot->{ybins}) $options"; |
|
1166
|
|
|
|
|
|
|
} |
|
1167
|
7
|
|
|
|
|
9
|
say {$args->{fh}} "hist2d_n, hist2d_xedges, hist2d_yedges, im$ax = ax$ax.hist2d(x, y $options $range)"; |
|
|
7
|
|
|
|
|
15
|
|
|
1168
|
7
|
|
|
|
|
11
|
say {$args->{fh}} 'max_hist2d_box = np.max(hist2d_n)'; |
|
|
7
|
|
|
|
|
10
|
|
|
1169
|
7
|
|
|
|
|
9
|
say {$args->{fh}} 'min_hist2d_box = np.min(hist2d_n)'; |
|
|
7
|
|
|
|
|
10
|
|
|
1170
|
7
|
|
|
|
|
9
|
say {$args->{fh}} "print(f'plot $ax hist2d density range = [{min_hist2d_box}, {max_hist2d_box}]')"; |
|
|
7
|
|
|
|
|
12
|
|
|
1171
|
7
|
100
|
|
|
|
34
|
return 0 if $plot->{'show.colorbar'} == 0; |
|
1172
|
6
|
|
|
|
|
11
|
my $opts = ''; |
|
1173
|
6
|
|
|
|
|
6
|
foreach my $o (grep {defined $plot->{$_}} ('cblocation', 'cborientation')) { #str; cblabel is handled separately below |
|
|
12
|
|
|
|
|
25
|
|
|
1174
|
1
|
|
|
|
|
1
|
my $mpl_opt = $o; |
|
1175
|
1
|
|
|
|
|
4
|
$mpl_opt =~ s/^cb//; |
|
1176
|
1
|
|
|
|
|
4
|
$opts .= ", $mpl_opt = '$plot->{$o}'"; |
|
1177
|
|
|
|
|
|
|
} |
|
1178
|
6
|
|
|
|
|
8
|
foreach my $o (grep {defined $plot->{$_}} ('cbdrawedges', 'cbpad')) { # numeric |
|
|
12
|
|
|
|
|
20
|
|
|
1179
|
2
|
50
|
|
|
|
6
|
die "$o = $plot->{$o} must be numeric" unless (looks_like_number($plot->{$o})); |
|
1180
|
2
|
|
|
|
|
9
|
my $mpl_opt = $o; |
|
1181
|
2
|
|
|
|
|
6
|
$mpl_opt =~ s/^cb//; |
|
1182
|
2
|
|
|
|
|
6
|
$opts .= ", $mpl_opt = $plot->{$o}"; |
|
1183
|
|
|
|
|
|
|
} |
|
1184
|
6
|
|
100
|
|
|
25
|
$plot->{'colorbar.on'} = $plot->{'colorbar.on'} // 1; |
|
1185
|
6
|
100
|
100
|
|
|
24
|
if (($plot->{'colorbar.on'}) && (defined $plot->{'shared.colorbar'})) { |
|
1186
|
1
|
|
|
|
|
2
|
my @ax = map {"ax$_"} @{ $plot->{'shared.colorbar'} }; |
|
|
2
|
|
|
|
|
6
|
|
|
|
1
|
|
|
|
|
3
|
|
|
1187
|
1
|
|
|
|
|
3
|
$opts .= ', ax = [' . join (',', @ax) . '] '; |
|
1188
|
|
|
|
|
|
|
} |
|
1189
|
|
|
|
|
|
|
# say { $args->{fh} } "cbar = fig.colorbar(im$ax $opts)" if $plot->{'colorbar.on'}; |
|
1190
|
6
|
100
|
|
|
|
12
|
if ( defined $plot->{cblabel} ) { |
|
1191
|
1
|
|
|
|
|
2
|
say { $args->{fh} } "plt.colorbar(im$ax, label = '$plot->{cblabel}' $opts)"; |
|
|
1
|
|
|
|
|
61
|
|
|
1192
|
|
|
|
|
|
|
} else { |
|
1193
|
5
|
|
|
|
|
7
|
say { $args->{fh} } "plt.colorbar(im$ax, label = 'Density' $opts)"; |
|
|
5
|
|
|
|
|
157
|
|
|
1194
|
|
|
|
|
|
|
} |
|
1195
|
|
|
|
|
|
|
} |
|
1196
|
|
|
|
|
|
|
|
|
1197
|
|
|
|
|
|
|
sub imshow_helper { |
|
1198
|
5
|
|
|
5
|
0
|
12
|
my ($args) = @_; |
|
1199
|
5
|
|
|
|
|
69
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
1200
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
1201
|
5
|
50
|
|
|
|
30
|
if ( ref $args ne 'HASH' ) { |
|
1202
|
0
|
|
|
|
|
0
|
die |
|
1203
|
|
|
|
|
|
|
"args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
1204
|
|
|
|
|
|
|
} |
|
1205
|
5
|
|
|
|
|
28
|
my @reqd_args = ( |
|
1206
|
|
|
|
|
|
|
'ax', |
|
1207
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
1208
|
|
|
|
|
|
|
'plot', # args to original function |
|
1209
|
|
|
|
|
|
|
); |
|
1210
|
5
|
|
|
|
|
13
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
15
|
|
|
|
|
34
|
|
|
1211
|
5
|
50
|
|
|
|
17
|
if ( scalar @undef_args > 0 ) { |
|
1212
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1213
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
1214
|
|
|
|
|
|
|
} |
|
1215
|
5
|
|
|
|
|
23
|
my @opt = (@ax_methods, @plt_methods, @fig_methods, @arg, 'ax', @{ $opt{$current_sub} }); |
|
|
5
|
|
|
|
|
312
|
|
|
1216
|
5
|
|
|
|
|
14
|
my $plot = $args->{plot}; |
|
1217
|
|
|
|
|
|
|
@undef_args = grep { |
|
1218
|
34
|
|
|
|
|
40
|
my $key = $_; |
|
1219
|
34
|
|
|
|
|
97
|
not grep { $_ eq $key } @opt |
|
|
15878
|
|
|
|
|
16578
|
|
|
1220
|
5
|
|
|
|
|
30
|
} keys %{$plot}; |
|
|
5
|
|
|
|
|
20
|
|
|
1221
|
5
|
50
|
|
|
|
21
|
if ( scalar @undef_args > 0 ) { |
|
1222
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1223
|
0
|
|
|
|
|
0
|
die |
|
1224
|
|
|
|
|
|
|
"The above arguments aren't defined for $plot->{'plot.type'} in $current_sub"; |
|
1225
|
|
|
|
|
|
|
} |
|
1226
|
5
|
|
|
|
|
15
|
my $data_ref = ref $plot->{data}; |
|
1227
|
5
|
100
|
|
|
|
13
|
if ($data_ref ne 'ARRAY') { |
|
1228
|
1
|
|
|
|
|
6
|
p $args; |
|
1229
|
1
|
|
|
|
|
7595
|
die "$current_sub can only accept 2-D arrays as input in \"data\", but received $data_ref"; |
|
1230
|
|
|
|
|
|
|
} |
|
1231
|
4
|
|
|
|
|
6
|
my $non_numeric_data = 0; |
|
1232
|
4
|
|
|
|
|
6
|
foreach my $row (@{ $plot->{data} }) { |
|
|
4
|
|
|
|
|
16
|
|
|
1233
|
7
|
100
|
|
|
|
12
|
if (grep {not looks_like_number($_)} @{ $row }) { |
|
|
18
|
|
|
|
|
46
|
|
|
|
7
|
|
|
|
|
19
|
|
|
1234
|
1
|
|
|
|
|
4
|
$non_numeric_data = 1; |
|
1235
|
1
|
|
|
|
|
4
|
last; |
|
1236
|
|
|
|
|
|
|
} |
|
1237
|
|
|
|
|
|
|
} |
|
1238
|
4
|
50
|
66
|
|
|
27
|
if (($non_numeric_data) && (not defined $plot->{stringmap})) { |
|
1239
|
0
|
|
|
|
|
0
|
p $args; |
|
1240
|
0
|
|
|
|
|
0
|
die "$current_sub needs a map to translate strings to integers"; |
|
1241
|
|
|
|
|
|
|
} |
|
1242
|
4
|
|
|
|
|
10
|
my (@ytick_labels, %intmap); |
|
1243
|
|
|
|
|
|
|
# assign integers for each key in stringmap |
|
1244
|
4
|
|
|
|
|
7
|
foreach my $string (sort keys %{ $plot->{stringmap} }) { |
|
|
4
|
|
|
|
|
19
|
|
|
1245
|
3
|
|
|
|
|
6
|
$intmap{$string} = scalar @ytick_labels; |
|
1246
|
3
|
|
|
|
|
7
|
push @ytick_labels, $plot->{stringmap}{$string}; |
|
1247
|
|
|
|
|
|
|
} |
|
1248
|
4
|
100
|
|
|
|
11
|
if ($non_numeric_data) { |
|
1249
|
1
|
|
|
|
|
2
|
foreach my $row (@{ $plot->{data} }) { |
|
|
1
|
|
|
|
|
4
|
|
|
1250
|
2
|
|
|
|
|
3
|
@{ $row } = map { $intmap{$_} } @{ $row }; |
|
|
2
|
|
|
|
|
5
|
|
|
|
4
|
|
|
|
|
7
|
|
|
|
2
|
|
|
|
|
2
|
|
|
1251
|
|
|
|
|
|
|
} |
|
1252
|
|
|
|
|
|
|
} |
|
1253
|
4
|
|
|
|
|
11
|
my ($min_val, $max_val) = ('inf', '-inf'); |
|
1254
|
4
|
|
|
|
|
8
|
my $opts = ''; |
|
1255
|
4
|
100
|
|
|
|
10
|
if ($non_numeric_data) { |
|
1256
|
1
|
|
|
|
|
3
|
say { $args->{fh} } 'from matplotlib.colors import ListedColormap'; |
|
|
1
|
|
|
|
|
4
|
|
|
1257
|
1
|
|
|
|
|
7
|
my @prop_cycle = ('#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', '#8c564b', '#e377c2', |
|
1258
|
|
|
|
|
|
|
'#7f7f7f', '#bcbd22', '#17becf'); #plt.rcParams['axes.prop_cycle'] |
|
1259
|
1
|
|
|
|
|
2
|
say { $args->{fh} } 'colors = ["' . join ('","', @prop_cycle[0..(scalar keys %intmap) - 1]) . '"]'; |
|
|
1
|
|
|
|
|
7
|
|
|
1260
|
1
|
|
|
|
|
1
|
say { $args->{fh} } 'this_cmap = ListedColormap(colors)'; |
|
|
1
|
|
|
|
|
3
|
|
|
1261
|
1
|
50
|
|
|
|
4
|
warn "deleting \"$plot->{cmap}\" because string data is present" if defined $plot->{cmap}; |
|
1262
|
1
|
|
|
|
|
2
|
delete $plot->{cmap}; |
|
1263
|
1
|
|
|
|
|
2
|
$min_val = 0; |
|
1264
|
1
|
|
|
|
|
5
|
$max_val = max(values %intmap); |
|
1265
|
1
|
|
|
|
|
3
|
$opts .= ', cmap = this_cmap'; |
|
1266
|
|
|
|
|
|
|
} |
|
1267
|
|
|
|
|
|
|
write_data({ |
|
1268
|
|
|
|
|
|
|
data => $plot->{data}, |
|
1269
|
|
|
|
|
|
|
fh => $args->{fh}, |
|
1270
|
4
|
|
|
|
|
22
|
name => 'd', |
|
1271
|
|
|
|
|
|
|
}); |
|
1272
|
4
|
|
|
|
|
10
|
foreach my $row (@{ $plot->{data} }) { # write data to the python file |
|
|
4
|
|
|
|
|
9
|
|
|
1273
|
8
|
100
|
|
|
|
14
|
next if $non_numeric_data; # strings don't have max and min |
|
1274
|
6
|
|
|
|
|
8
|
$min_val = min(@{ $row }, $min_val); |
|
|
6
|
|
|
|
|
18
|
|
|
1275
|
6
|
|
|
|
|
6
|
$max_val = max(@{ $row }, $max_val); |
|
|
6
|
|
|
|
|
13
|
|
|
1276
|
|
|
|
|
|
|
} |
|
1277
|
4
|
|
50
|
|
|
12
|
my $ax = $args->{ax} // ''; |
|
1278
|
4
|
|
33
|
|
|
19
|
$plot->{vmax} = $plot->{vmax} // $max_val; |
|
1279
|
4
|
|
66
|
|
|
22
|
$plot->{vmin} = $plot->{vmin} // $min_val; |
|
1280
|
4
|
|
|
|
|
8
|
foreach my $opt (grep {defined $plot->{$_}} ('cmap')) { # strings |
|
|
4
|
|
|
|
|
10
|
|
|
1281
|
0
|
|
|
|
|
0
|
$opts .= ", $opt = '$plot->{$opt}'"; |
|
1282
|
|
|
|
|
|
|
} |
|
1283
|
4
|
|
|
|
|
8
|
foreach my $opt (grep {defined $plot->{$_}} ('vmax', 'vmin')) { # numeric |
|
|
8
|
|
|
|
|
13
|
|
|
1284
|
8
|
|
|
|
|
17
|
$opts .= ", $opt = $plot->{$opt}"; |
|
1285
|
|
|
|
|
|
|
} |
|
1286
|
4
|
|
|
|
|
5
|
say { $args->{fh} } "im$ax = ax$ax.imshow(d, aspect = 'auto' $opts)"; |
|
|
4
|
|
|
|
|
10
|
|
|
1287
|
4
|
|
|
|
|
11
|
$opts = ''; |
|
1288
|
4
|
100
|
|
|
|
9
|
if ($non_numeric_data) { |
|
1289
|
1
|
|
|
|
|
3
|
$opts .= ', ticks = [' . join (',', map {$_ + 0.5 - $_/$max_val} 0..$max_val) . ']'; |
|
|
3
|
|
|
|
|
13
|
|
|
1290
|
|
|
|
|
|
|
} |
|
1291
|
4
|
|
|
|
|
8
|
foreach my $o (grep {defined $plot->{$_}} ('cblabel', 'cblocation', 'cborientation')) { #str |
|
|
12
|
|
|
|
|
22
|
|
|
1292
|
0
|
|
|
|
|
0
|
my $mpl_opt = $o; |
|
1293
|
0
|
|
|
|
|
0
|
$mpl_opt =~ s/^cb//; |
|
1294
|
0
|
|
|
|
|
0
|
$opts .= ", $mpl_opt = '$plot->{$o}'"; |
|
1295
|
|
|
|
|
|
|
} |
|
1296
|
4
|
|
|
|
|
7
|
foreach my $o (grep {defined $plot->{$_}} ('cbdrawedges', 'cbpad')) { # numeric |
|
|
8
|
|
|
|
|
13
|
|
|
1297
|
1
|
50
|
|
|
|
4
|
die "$o = $plot->{$o} must be numeric" unless (looks_like_number($plot->{$o})); |
|
1298
|
1
|
|
|
|
|
2
|
my $mpl_opt = $o; |
|
1299
|
1
|
|
|
|
|
4
|
$mpl_opt =~ s/^cb//; |
|
1300
|
1
|
|
|
|
|
7
|
$opts .= ", $mpl_opt = $plot->{$o}"; |
|
1301
|
|
|
|
|
|
|
} |
|
1302
|
4
|
|
50
|
|
|
26
|
$plot->{'colorbar.on'} = $plot->{'colorbar.on'} // 1; |
|
1303
|
4
|
50
|
33
|
|
|
22
|
if (($plot->{'colorbar.on'}) && (defined $plot->{'shared.colorbar'})) { |
|
1304
|
0
|
|
|
|
|
0
|
my @ax = map {"ax$_"} @{ $plot->{'shared.colorbar'} }; |
|
|
0
|
|
|
|
|
0
|
|
|
|
0
|
|
|
|
|
0
|
|
|
1305
|
0
|
|
|
|
|
0
|
$opts .= ', ax = [' . join (',', @ax) . '] '; |
|
1306
|
|
|
|
|
|
|
} |
|
1307
|
4
|
50
|
|
|
|
9
|
say { $args->{fh} } "cbar = fig.colorbar(im$ax $opts)" if $plot->{'colorbar.on'}; |
|
|
4
|
|
|
|
|
10
|
|
|
1308
|
4
|
50
|
66
|
|
|
57
|
if (($non_numeric_data) && ($plot->{'colorbar.on'})) { |
|
1309
|
1
|
|
|
|
|
2
|
say { $args->{fh} } 'cbar.ax.set_yticklabels(["' . join ('","', @ytick_labels) . '"])'; |
|
|
1
|
|
|
|
|
21
|
|
|
1310
|
|
|
|
|
|
|
} |
|
1311
|
|
|
|
|
|
|
} |
|
1312
|
|
|
|
|
|
|
|
|
1313
|
|
|
|
|
|
|
sub pie_helper { |
|
1314
|
2
|
|
|
2
|
0
|
5
|
my ($args) = @_; |
|
1315
|
2
|
|
|
|
|
24
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
1316
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
1317
|
2
|
50
|
|
|
|
11
|
if ( ref $args ne 'HASH' ) { |
|
1318
|
0
|
|
|
|
|
0
|
die |
|
1319
|
|
|
|
|
|
|
"args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
1320
|
|
|
|
|
|
|
} |
|
1321
|
2
|
|
|
|
|
13
|
my @reqd_args = ( |
|
1322
|
|
|
|
|
|
|
'ax', |
|
1323
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
1324
|
|
|
|
|
|
|
'plot', # args to original function |
|
1325
|
|
|
|
|
|
|
); |
|
1326
|
2
|
|
|
|
|
4
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
6
|
|
|
|
|
13
|
|
|
1327
|
2
|
50
|
|
|
|
4
|
if ( scalar @undef_args > 0 ) { |
|
1328
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1329
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
1330
|
|
|
|
|
|
|
} |
|
1331
|
2
|
|
|
|
|
8
|
my @opt = (@ax_methods, @plt_methods, @fig_methods, @arg, 'ax', @{ $opt{$current_sub} }); |
|
|
2
|
|
|
|
|
74
|
|
|
1332
|
2
|
|
|
|
|
4
|
my $plot = $args->{plot}; |
|
1333
|
|
|
|
|
|
|
my @undef_opt = grep { |
|
1334
|
12
|
|
|
|
|
14
|
my $key = $_; |
|
1335
|
12
|
|
|
|
|
30
|
not grep { $_ eq $key } @opt |
|
|
5424
|
|
|
|
|
5702
|
|
|
1336
|
2
|
|
|
|
|
4
|
} keys %{$plot}; |
|
|
2
|
|
|
|
|
6
|
|
|
1337
|
2
|
50
|
|
|
|
10
|
if ( scalar @undef_opt > 0 ) { |
|
1338
|
0
|
|
|
|
|
0
|
p @undef_opt; |
|
1339
|
0
|
|
|
|
|
0
|
die |
|
1340
|
|
|
|
|
|
|
"The above arguments aren't defined for $plot->{'plot.type'} in $current_sub"; |
|
1341
|
|
|
|
|
|
|
} |
|
1342
|
2
|
|
|
|
|
4
|
my @key_order; |
|
1343
|
2
|
50
|
|
|
|
11
|
if ( defined $plot->{'key.order'} ) { |
|
1344
|
0
|
|
|
|
|
0
|
@key_order = @{ $plot->{'key.order'} }; |
|
|
0
|
|
|
|
|
0
|
|
|
1345
|
|
|
|
|
|
|
} else { |
|
1346
|
2
|
|
|
|
|
6
|
@key_order = sort keys %{ $plot->{data} }; |
|
|
2
|
|
|
|
|
14
|
|
|
1347
|
|
|
|
|
|
|
} |
|
1348
|
2
|
|
50
|
|
|
22
|
$plot->{autopct} = $plot->{autopct} // ''; |
|
1349
|
2
|
|
|
|
|
4
|
my $opt = ''; |
|
1350
|
2
|
50
|
|
|
|
8
|
if ( $plot->{autopct} ne '' ) { |
|
1351
|
0
|
|
|
|
|
0
|
$opt .= ", autopct = '$plot->{autopct}'"; |
|
1352
|
|
|
|
|
|
|
} |
|
1353
|
2
|
|
|
|
|
4
|
foreach my $arg ( grep { defined $plot->{$_} } 'labeldistance', 'pctdistance' ) { |
|
|
4
|
|
|
|
|
16
|
|
|
1354
|
0
|
|
|
|
|
0
|
$opt .= ", $arg = $plot->{$arg}"; |
|
1355
|
|
|
|
|
|
|
} |
|
1356
|
|
|
|
|
|
|
write_data({ |
|
1357
|
|
|
|
|
|
|
data => \@key_order, |
|
1358
|
|
|
|
|
|
|
fh => $args->{fh}, |
|
1359
|
2
|
|
|
|
|
16
|
name => 'labels', |
|
1360
|
|
|
|
|
|
|
}); |
|
1361
|
2
|
|
|
|
|
5
|
say { $args->{fh} } 'vals = [' |
|
1362
|
2
|
|
|
|
|
4
|
. join( ',', @{ $plot->{data} }{@key_order} ) . ']'; |
|
|
2
|
|
|
|
|
59
|
|
|
1363
|
2
|
|
50
|
|
|
8
|
my $ax = $args->{ax} // ''; |
|
1364
|
2
|
|
|
|
|
3
|
say { $args->{fh} } "ax$ax.pie(vals, labels = labels $opt)"; |
|
|
2
|
|
|
|
|
34
|
|
|
1365
|
|
|
|
|
|
|
} |
|
1366
|
|
|
|
|
|
|
|
|
1367
|
|
|
|
|
|
|
sub plot_helper { |
|
1368
|
13
|
|
|
13
|
0
|
33
|
my ($args) = @_; |
|
1369
|
13
|
|
|
|
|
167
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
1370
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
1371
|
13
|
50
|
|
|
|
70
|
if ( ref $args ne 'HASH' ) { |
|
1372
|
0
|
|
|
|
|
0
|
die "args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
1373
|
|
|
|
|
|
|
} |
|
1374
|
13
|
|
|
|
|
40
|
my @reqd_args = ( |
|
1375
|
|
|
|
|
|
|
'ax', 'fh',# e.g. $py, $fh, which will be passed by the subroutine |
|
1376
|
|
|
|
|
|
|
'plot', # args to original function |
|
1377
|
|
|
|
|
|
|
); |
|
1378
|
13
|
|
|
|
|
29
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
39
|
|
|
|
|
80
|
|
|
1379
|
13
|
50
|
|
|
|
36
|
if ( scalar @undef_args > 0 ) { |
|
1380
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1381
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
1382
|
|
|
|
|
|
|
} |
|
1383
|
13
|
|
|
|
|
46
|
my @opt = (@ax_methods, @fig_methods, @arg, @plt_methods, 'ax', @{ $opt{$current_sub} }); |
|
|
13
|
|
|
|
|
616
|
|
|
1384
|
13
|
|
|
|
|
30
|
my $plot = $args->{plot}; |
|
1385
|
|
|
|
|
|
|
my @bad_opt = grep { |
|
1386
|
92
|
|
|
|
|
98
|
my $key = $_; |
|
1387
|
92
|
|
|
|
|
283
|
not grep { $_ eq $key } @opt |
|
|
41768
|
|
|
|
|
43199
|
|
|
1388
|
13
|
|
|
|
|
22
|
} keys %{$plot}; |
|
|
13
|
|
|
|
|
45
|
|
|
1389
|
13
|
50
|
|
|
|
46
|
if ( scalar @bad_opt > 0 ) { |
|
1390
|
0
|
|
|
|
|
0
|
p $args; |
|
1391
|
0
|
|
|
|
|
0
|
p @bad_opt; |
|
1392
|
0
|
|
|
|
|
0
|
die "The above arguments aren't defined for $plot->{'plot.type'} in $current_sub"; |
|
1393
|
|
|
|
|
|
|
} |
|
1394
|
13
|
|
100
|
|
|
68
|
$plot->{'show.legend'} = $plot->{'show.legend'} // 1; |
|
1395
|
13
|
|
|
|
|
18
|
foreach my $axis (@{ $plot->{logscale} }) { # x, y |
|
|
13
|
|
|
|
|
45
|
|
|
1396
|
0
|
0
|
|
|
|
0
|
if ($axis =~ m/^([^xy])$/) { |
|
1397
|
0
|
|
|
|
|
0
|
p $plot->{logscale}; |
|
1398
|
0
|
|
|
|
|
0
|
die "only \"x\" and \"y\" are allowed in boxplot, not \"$axis\""; |
|
1399
|
|
|
|
|
|
|
} |
|
1400
|
0
|
|
|
|
|
0
|
say {$args->{fh}} "ax$args->{ax}.set_$axis" . 'scale("log")'; |
|
|
0
|
|
|
|
|
0
|
|
|
1401
|
|
|
|
|
|
|
} |
|
1402
|
13
|
|
|
|
|
21
|
my @twinx; |
|
1403
|
|
|
|
|
|
|
# Allow a single line entered as two bare array refs, with no enclosing |
|
1404
|
|
|
|
|
|
|
# pair-array and no hash key: |
|
1405
|
|
|
|
|
|
|
# data => [ \@x, \@y ] |
|
1406
|
|
|
|
|
|
|
# Promote it to the canonical array-of-pairs form so the array path below |
|
1407
|
|
|
|
|
|
|
# handles it unchanged: |
|
1408
|
|
|
|
|
|
|
# data => [ [ \@x, \@y ] ] |
|
1409
|
|
|
|
|
|
|
# The discriminator vs. the multi-line form (data => [ [\@x,\@y], ... ]) is |
|
1410
|
|
|
|
|
|
|
# data->[0][0]: a number here, an ARRAY ref in the multi-line form. |
|
1411
|
13
|
100
|
66
|
|
|
79
|
if ( ( ref $plot->{data} eq 'ARRAY' ) |
|
|
|
|
66
|
|
|
|
|
|
|
|
|
33
|
|
|
|
|
|
|
|
|
66
|
|
|
|
|
|
1412
|
6
|
|
|
|
|
61
|
&& ( scalar @{ $plot->{data} } == 2 ) |
|
1413
|
|
|
|
|
|
|
&& ( ref $plot->{data}[0] eq 'ARRAY' ) |
|
1414
|
|
|
|
|
|
|
&& ( ref $plot->{data}[1] eq 'ARRAY' ) |
|
1415
|
|
|
|
|
|
|
&& ( ref $plot->{data}[0][0] ne 'ARRAY' ) ) |
|
1416
|
|
|
|
|
|
|
{ |
|
1417
|
2
|
|
|
|
|
6
|
$plot->{data} = [ $plot->{data} ]; |
|
1418
|
|
|
|
|
|
|
} |
|
1419
|
13
|
100
|
|
|
|
33
|
if (ref $plot->{data} eq 'ARRAY') { |
|
1420
|
6
|
100
|
|
|
|
16
|
if (defined $plot->{'set.options'}) { |
|
1421
|
4
|
|
|
|
|
7
|
my $ref_type = ref $plot->{'set.options'}; |
|
1422
|
|
|
|
|
|
|
# a scalar applies to every line (handy for the single-line form); |
|
1423
|
|
|
|
|
|
|
# an array gives one option string per line (positional) |
|
1424
|
4
|
100
|
|
|
|
14
|
if ($ref_type eq 'ARRAY') { |
|
|
|
50
|
|
|
|
|
|
|
1425
|
2
|
|
|
|
|
4
|
my $n_set_opt = scalar @{ $plot->{'set.options'} }; |
|
|
2
|
|
|
|
|
3
|
|
|
1426
|
2
|
|
|
|
|
5
|
my $n_data = scalar @{ $plot->{data} }; |
|
|
2
|
|
|
|
|
4
|
|
|
1427
|
2
|
50
|
|
|
|
7
|
if ($n_set_opt > $n_data) { |
|
1428
|
0
|
|
|
|
|
0
|
p $args; |
|
1429
|
0
|
|
|
|
|
0
|
die "there are $n_set_opt sets for options, but only $n_data data points."; |
|
1430
|
|
|
|
|
|
|
} |
|
1431
|
|
|
|
|
|
|
} elsif ($ref_type ne '') { |
|
1432
|
0
|
|
|
|
|
0
|
p $args; |
|
1433
|
0
|
|
|
|
|
0
|
die "\"set.options\" must be a scalar (applied to every line) or an array (one per line) when data is an array, but \"$ref_type\" was given."; |
|
1434
|
|
|
|
|
|
|
} |
|
1435
|
|
|
|
|
|
|
} |
|
1436
|
6
|
50
|
|
|
|
15
|
if (defined $plot->{twinx}) { |
|
1437
|
0
|
0
|
|
|
|
0
|
if (ref $plot->{twinx} eq '') { |
|
|
|
0
|
|
|
|
|
|
|
1438
|
0
|
0
|
|
|
|
0
|
die "twinx must be an array index, not \"$plot->{twinx}\"" unless $plot->{twinx} =~ m/^\d+$/; |
|
1439
|
0
|
|
|
|
|
0
|
@twinx = $plot->{twinx}; |
|
1440
|
|
|
|
|
|
|
} elsif (ref $plot->{twinx} eq 'ARRAY') { |
|
1441
|
0
|
|
|
|
|
0
|
@bad_opt = grep {$_ !~ m/^\d+$/} @{ $plot->{twinx} }; |
|
|
0
|
|
|
|
|
0
|
|
|
|
0
|
|
|
|
|
0
|
|
|
1442
|
0
|
0
|
|
|
|
0
|
if (scalar @bad_opt > 0) { |
|
1443
|
0
|
|
|
|
|
0
|
p @bad_opt; |
|
1444
|
0
|
|
|
|
|
0
|
die 'data that could not possibly be an array index for twinx is shown above'; |
|
1445
|
|
|
|
|
|
|
} |
|
1446
|
0
|
|
|
|
|
0
|
@twinx = @{ $plot->{twinx} }; |
|
|
0
|
|
|
|
|
0
|
|
|
1447
|
|
|
|
|
|
|
} |
|
1448
|
|
|
|
|
|
|
} |
|
1449
|
6
|
100
|
|
|
|
11
|
if (defined $plot->{'twinx.args'}) { |
|
1450
|
1
|
|
|
|
|
3
|
my $ref = ref $plot->{'twinx.args'}; |
|
1451
|
1
|
50
|
|
|
|
3
|
die "\"twinx.args\" must be a hash, but $ref was entered" unless $ref eq 'HASH'; |
|
1452
|
1
|
|
|
|
|
2
|
@bad_opt = grep {$_ !~ m/^\d+$/} keys %{ $plot->{'twinx.args'} }; |
|
|
1
|
|
|
|
|
6
|
|
|
|
1
|
|
|
|
|
3
|
|
|
1453
|
1
|
50
|
|
|
|
3
|
if (scalar @bad_opt > 0) { |
|
1454
|
0
|
|
|
|
|
0
|
p @bad_opt; |
|
1455
|
0
|
|
|
|
|
0
|
die 'the above keys are not hash indices'; |
|
1456
|
|
|
|
|
|
|
} |
|
1457
|
1
|
|
|
|
|
2
|
foreach my $idx (keys %{ $plot->{'twinx.args'} }) { |
|
|
1
|
|
|
|
|
3
|
|
|
1458
|
1
|
50
|
|
|
|
4
|
next if grep {$idx == $_} @twinx; |
|
|
0
|
|
|
|
|
0
|
|
|
1459
|
1
|
|
|
|
|
2
|
push @twinx, $idx; |
|
1460
|
|
|
|
|
|
|
} |
|
1461
|
|
|
|
|
|
|
} |
|
1462
|
6
|
|
|
|
|
9
|
my $arr_i = 0; |
|
1463
|
6
|
|
|
|
|
7
|
foreach my $arr (@{ $plot->{data} }) { |
|
|
6
|
|
|
|
|
12
|
|
|
1464
|
10
|
|
|
|
|
15
|
my $ref = ref $arr; |
|
1465
|
10
|
50
|
|
|
|
18
|
if ($ref ne 'ARRAY') { |
|
1466
|
0
|
|
|
|
|
0
|
p $plot->{data}[$arr_i]; |
|
1467
|
0
|
|
|
|
|
0
|
die "index $arr_i is \"$ref\" but must be \"ARRAY\""; |
|
1468
|
|
|
|
|
|
|
} |
|
1469
|
10
|
|
|
|
|
10
|
my $n_elem = scalar @{ $arr }; |
|
|
10
|
|
|
|
|
14
|
|
|
1470
|
10
|
50
|
|
|
|
16
|
if ($n_elem != 2) { |
|
1471
|
0
|
|
|
|
|
0
|
p $arr; |
|
1472
|
0
|
|
|
|
|
0
|
die "there must be 2 array references (x, y) but index $arr_i has $n_elem"; |
|
1473
|
|
|
|
|
|
|
} |
|
1474
|
10
|
|
|
|
|
16
|
@bad_opt = map { scalar @{ $arr->[$_] } } (0,1); |
|
|
20
|
|
|
|
|
19
|
|
|
|
20
|
|
|
|
|
35
|
|
|
1475
|
10
|
50
|
|
|
|
19
|
if ($bad_opt[0] != $bad_opt[1]) { |
|
1476
|
0
|
|
|
|
|
0
|
say STDERR "index $arr_i must have arrays/array refs of equal length, but these lengths were given:"; |
|
1477
|
0
|
|
|
|
|
0
|
p @bad_opt; |
|
1478
|
0
|
|
|
|
|
0
|
die 'the array/array ref lengths must be equal'; |
|
1479
|
|
|
|
|
|
|
} |
|
1480
|
10
|
|
|
|
|
12
|
foreach my $i (0,1) { |
|
1481
|
20
|
|
|
|
|
22
|
my $max_i = scalar @{ $arr->[$i] } - 1; |
|
|
20
|
|
|
|
|
40
|
|
|
1482
|
20
|
|
|
|
|
30
|
@bad_opt = grep {not looks_like_number($arr->[$i][$_])} 0..$max_i; |
|
|
156
|
|
|
|
|
208
|
|
|
1483
|
20
|
50
|
|
|
|
53
|
next if scalar @bad_opt == 0; # it's fine, don't worry |
|
1484
|
0
|
|
|
|
|
0
|
p $plot->{data}[$arr_i]; |
|
1485
|
0
|
|
|
|
|
0
|
p @bad_opt; |
|
1486
|
0
|
|
|
|
|
0
|
@bad_opt = @{ $arr->[$i] }[@bad_opt]; |
|
|
0
|
|
|
|
|
0
|
|
|
1487
|
0
|
|
|
|
|
0
|
say STDERR 'have these non-numeric values:'; |
|
1488
|
0
|
|
|
|
|
0
|
p @bad_opt; |
|
1489
|
0
|
|
|
|
|
0
|
die "Array index $arr_i/axis $i has non-numeric values (above)"; |
|
1490
|
|
|
|
|
|
|
} |
|
1491
|
10
|
|
|
|
|
16
|
my $options = ''; |
|
1492
|
10
|
|
|
|
|
13
|
say { $args->{fh} } 'x = [' . join( ',', @{ $arr->[0] } ) . ']'; |
|
|
10
|
|
|
|
|
19
|
|
|
|
10
|
|
|
|
|
92
|
|
|
1493
|
10
|
|
|
|
|
15
|
say { $args->{fh} } 'y = [' . join( ',', @{ $arr->[1] } ) . ']'; |
|
|
10
|
|
|
|
|
33
|
|
|
|
10
|
|
|
|
|
149
|
|
|
1494
|
10
|
100
|
|
|
|
28
|
if ( defined $plot->{'set.options'} ) { |
|
1495
|
7
|
|
|
|
|
13
|
my $so_ref = ref $plot->{'set.options'}; |
|
1496
|
7
|
100
|
33
|
|
|
42
|
if ( $so_ref eq '' ) { # scalar: same options for every line |
|
|
|
50
|
|
|
|
|
|
|
1497
|
3
|
|
|
|
|
24
|
$options = ", $plot->{'set.options'}"; |
|
1498
|
|
|
|
|
|
|
} elsif ( ( $so_ref eq 'ARRAY' ) |
|
1499
|
|
|
|
|
|
|
&& ( defined $plot->{'set.options'}[$arr_i] ) ) { |
|
1500
|
4
|
|
|
|
|
9
|
$options = ", $plot->{'set.options'}[$arr_i]"; # one per line |
|
1501
|
|
|
|
|
|
|
} |
|
1502
|
|
|
|
|
|
|
} |
|
1503
|
10
|
|
|
|
|
19
|
my $ax = "ax$args->{ax}"; |
|
1504
|
10
|
100
|
|
|
|
21
|
if (grep {$arr_i == $_} @twinx) { |
|
|
2
|
|
|
|
|
6
|
|
|
1505
|
1
|
|
|
|
|
3
|
say { $args->{fh} } "twinx_$ax = $ax.twinx()# " . __LINE__; |
|
|
1
|
|
|
|
|
4
|
|
|
1506
|
1
|
|
|
|
|
2
|
say { $args->{fh} } "twinx_$ax.plot(x, y $options) # " . __LINE__; |
|
|
1
|
|
|
|
|
3
|
|
|
1507
|
1
|
50
|
|
|
|
4
|
if (defined $plot->{'twinx.args'}{$arr_i}) { |
|
1508
|
|
|
|
|
|
|
plot_args({ |
|
1509
|
|
|
|
|
|
|
fh => $args->{fh}, |
|
1510
|
1
|
|
|
|
|
7
|
args => $plot->{'twinx.args'}{$arr_i}, |
|
1511
|
|
|
|
|
|
|
ax => "twinx_$ax" |
|
1512
|
|
|
|
|
|
|
}); |
|
1513
|
|
|
|
|
|
|
} |
|
1514
|
|
|
|
|
|
|
} else { |
|
1515
|
9
|
|
|
|
|
11
|
say { $args->{fh} } "ax$args->{ax}.plot(x, y $options) # " . __LINE__; |
|
|
9
|
|
|
|
|
26
|
|
|
1516
|
|
|
|
|
|
|
} |
|
1517
|
10
|
|
|
|
|
19
|
$arr_i++; |
|
1518
|
|
|
|
|
|
|
} |
|
1519
|
6
|
|
|
|
|
110
|
return 1; # the rest only applies if $plot->{data} is a hash |
|
1520
|
|
|
|
|
|
|
} |
|
1521
|
7
|
|
|
|
|
10
|
my @key_order; |
|
1522
|
7
|
50
|
|
|
|
20
|
if ( defined $plot->{'key.order'} ) { |
|
1523
|
0
|
|
|
|
|
0
|
@key_order = @{ $plot->{'key.order'} }; |
|
|
0
|
|
|
|
|
0
|
|
|
1524
|
|
|
|
|
|
|
} else { |
|
1525
|
7
|
|
|
|
|
9
|
@key_order = sort keys %{ $plot->{data} }; |
|
|
7
|
|
|
|
|
33
|
|
|
1526
|
|
|
|
|
|
|
} |
|
1527
|
7
|
100
|
66
|
|
|
37
|
if ((defined $plot->{'set.options'}) && (ref $plot->{'set.options'} eq 'HASH')) { |
|
1528
|
2
|
|
|
|
|
4
|
@bad_opt = sort grep {!defined $plot->{data}{$_}} keys %{ $plot->{'set.options'} }; |
|
|
3
|
|
|
|
|
10
|
|
|
|
2
|
|
|
|
|
8
|
|
|
1529
|
2
|
50
|
|
|
|
7
|
if (scalar @bad_opt > 0) { |
|
1530
|
0
|
|
|
|
|
0
|
p @bad_opt; |
|
1531
|
0
|
|
|
|
|
0
|
die "the above options are defined for undefined data sets in $current_sub."; |
|
1532
|
|
|
|
|
|
|
} |
|
1533
|
|
|
|
|
|
|
} |
|
1534
|
7
|
50
|
|
|
|
36
|
if (defined $plot->{twinx}) { |
|
1535
|
0
|
0
|
|
|
|
0
|
if (ref $plot->{twinx} eq '') { |
|
|
|
0
|
|
|
|
|
|
|
1536
|
0
|
0
|
|
|
|
0
|
die "twinx \"$plot->{twinx}\" is not a key in data" unless defined $plot->{data}{ $plot->{twinx} }; |
|
1537
|
0
|
|
|
|
|
0
|
@twinx = ($plot->{twinx}); |
|
1538
|
|
|
|
|
|
|
} elsif (ref $plot->{twinx} eq 'HASH') { |
|
1539
|
0
|
|
|
|
|
0
|
@bad_opt = sort grep {!defined $plot->{data}{$_}} keys %{ $plot->{twinx} }; |
|
|
0
|
|
|
|
|
0
|
|
|
|
0
|
|
|
|
|
0
|
|
|
1540
|
0
|
0
|
|
|
|
0
|
if (scalar @bad_opt > 0) { |
|
1541
|
0
|
|
|
|
|
0
|
p @bad_opt; |
|
1542
|
0
|
|
|
|
|
0
|
die 'data for undefined data keys is shown above'; |
|
1543
|
|
|
|
|
|
|
} |
|
1544
|
0
|
|
|
|
|
0
|
@twinx = sort keys %{ $plot->{twinx} }; |
|
|
0
|
|
|
|
|
0
|
|
|
1545
|
|
|
|
|
|
|
} |
|
1546
|
|
|
|
|
|
|
} |
|
1547
|
7
|
100
|
|
|
|
16
|
if (defined $plot->{'twinx.args'}) { |
|
1548
|
1
|
|
|
|
|
156
|
my $ref = ref $plot->{'twinx.args'}; |
|
1549
|
1
|
50
|
|
|
|
7
|
die "\"twinx.args\" must be a hash, but $ref was entered" unless $ref eq 'HASH'; |
|
1550
|
1
|
|
|
|
|
2
|
@bad_opt = sort grep {!defined $plot->{data}{$_}} keys %{ $plot->{'twinx.args'} }; |
|
|
1
|
|
|
|
|
3
|
|
|
|
1
|
|
|
|
|
3
|
|
|
1551
|
1
|
50
|
|
|
|
3
|
if (scalar @bad_opt > 0) { |
|
1552
|
0
|
|
|
|
|
0
|
p @bad_opt; |
|
1553
|
0
|
|
|
|
|
0
|
die 'the above keys are not present in data keys'; |
|
1554
|
|
|
|
|
|
|
} |
|
1555
|
1
|
|
|
|
|
2
|
foreach my $set (keys %{ $plot->{'twinx.args'} }) { |
|
|
1
|
|
|
|
|
3
|
|
|
1556
|
1
|
50
|
|
|
|
3
|
next if grep {$set eq $_} @twinx; |
|
|
0
|
|
|
|
|
0
|
|
|
1557
|
1
|
|
|
|
|
2
|
push @twinx, $set; |
|
1558
|
|
|
|
|
|
|
} |
|
1559
|
|
|
|
|
|
|
} |
|
1560
|
7
|
|
|
|
|
12
|
my $set_i = 0; |
|
1561
|
7
|
|
|
|
|
12
|
foreach my $set (@key_order) { |
|
1562
|
8
|
|
|
|
|
19
|
my $set_ref = ref $plot->{data}{$set}; |
|
1563
|
8
|
50
|
|
|
|
16
|
if ( $set_ref ne 'ARRAY' ) { |
|
1564
|
0
|
|
|
|
|
0
|
p $plot->{data}{$set}; |
|
1565
|
0
|
|
|
|
|
0
|
die "$set must have two arrays, x and y coordinates, but instead has a $set_ref"; |
|
1566
|
|
|
|
|
|
|
} |
|
1567
|
8
|
|
|
|
|
10
|
my $n_arrays = scalar @{ $plot->{data}{$set} }; |
|
|
8
|
|
|
|
|
14
|
|
|
1568
|
8
|
50
|
|
|
|
18
|
if ( $n_arrays != 2 ) { |
|
1569
|
0
|
|
|
|
|
0
|
p $plot->{data}{$set}; |
|
1570
|
0
|
|
|
|
|
0
|
die "$n_arrays were entered for $set, but there must be exactly 2"; |
|
1571
|
|
|
|
|
|
|
} |
|
1572
|
8
|
|
|
|
|
17
|
my @n_elem = map { scalar @{ $plot->{data}{$set}[$_] }} (0,1); |
|
|
16
|
|
|
|
|
16
|
|
|
|
16
|
|
|
|
|
48
|
|
|
1573
|
8
|
50
|
|
|
|
17
|
if ( $n_elem[0] != $n_elem[1] ) { |
|
1574
|
0
|
|
|
|
|
0
|
p $plot->{data}{$set}; |
|
1575
|
0
|
|
|
|
|
0
|
p @n_elem; |
|
1576
|
0
|
|
|
|
|
0
|
die "$set has length = $n_elem[0] for x; length = $n_elem[1] for y: x & y must be of equal length"; |
|
1577
|
|
|
|
|
|
|
} |
|
1578
|
8
|
|
|
|
|
15
|
foreach my $ax (0,1) { |
|
1579
|
16
|
|
|
|
|
14
|
my $n = scalar @{ $plot->{data}{$set}[$ax] }; |
|
|
16
|
|
|
|
|
22
|
|
|
1580
|
16
|
|
|
|
|
38
|
my @undef_i = grep {not defined $plot->{data}{$set}[$ax][$_]} 0..$n-1; |
|
|
450
|
|
|
|
|
529
|
|
|
1581
|
16
|
50
|
|
|
|
34
|
if (scalar @undef_i > 0) { |
|
1582
|
0
|
|
|
|
|
0
|
p $plot; |
|
1583
|
0
|
|
|
|
|
0
|
p @undef_i; |
|
1584
|
0
|
|
|
|
|
0
|
my $max_i = scalar @{ $plot->{data}{$set}[$ax] }; |
|
|
0
|
|
|
|
|
0
|
|
|
1585
|
0
|
|
|
|
|
0
|
die "set $set axis $ax has undefined indices, of max index $max_i in $current_sub"; |
|
1586
|
|
|
|
|
|
|
} |
|
1587
|
|
|
|
|
|
|
} |
|
1588
|
8
|
|
|
|
|
13
|
my $options = ''; |
|
1589
|
8
|
|
|
|
|
9
|
say { $args->{fh} } 'x = [' . join( ',', @{ $plot->{data}{$set}[0] } ) . ']'; |
|
|
8
|
|
|
|
|
16
|
|
|
|
8
|
|
|
|
|
232
|
|
|
1590
|
8
|
|
|
|
|
14
|
say { $args->{fh} } 'y = [' . join( ',', @{ $plot->{data}{$set}[1] } ) . ']'; |
|
|
8
|
|
|
|
|
14
|
|
|
|
8
|
|
|
|
|
244
|
|
|
1591
|
8
|
50
|
66
|
|
|
33
|
if ( ( defined $plot->{'set.options'} ) |
|
1592
|
|
|
|
|
|
|
&& ( ref $plot->{'set.options'} eq '' ) ) |
|
1593
|
|
|
|
|
|
|
{ |
|
1594
|
0
|
|
|
|
|
0
|
$options = ", $plot->{'set.options'}"; |
|
1595
|
|
|
|
|
|
|
} |
|
1596
|
8
|
100
|
66
|
|
|
31
|
if ( ( ref $plot->{'set.options'} eq 'HASH' ) && ( defined $plot->{'set.options'}{$set} ) ) { |
|
1597
|
3
|
|
|
|
|
7
|
$options = ", $plot->{'set.options'}{$set}"; |
|
1598
|
|
|
|
|
|
|
} |
|
1599
|
8
|
|
|
|
|
11
|
my $label = ''; |
|
1600
|
8
|
100
|
|
|
|
21
|
if ( $plot->{'show.legend'} ) { |
|
1601
|
4
|
|
|
|
|
8
|
$label = ",label = '$set'"; |
|
1602
|
|
|
|
|
|
|
} |
|
1603
|
8
|
|
|
|
|
15
|
my $ax = "ax$args->{ax}"; |
|
1604
|
8
|
100
|
|
|
|
19
|
if (grep {$set eq $_} @twinx) { # this set has |
|
|
2
|
|
|
|
|
8
|
|
|
1605
|
1
|
|
|
|
|
3
|
say { $args->{fh} } "twinx_${ax}_$set_i = $ax.twinx()# " . __LINE__; |
|
|
1
|
|
|
|
|
4
|
|
|
1606
|
1
|
|
|
|
|
3
|
say { $args->{fh} } "twinx_${ax}_$set_i.plot(x, y $label $options) # " . __LINE__; |
|
|
1
|
|
|
|
|
5
|
|
|
1607
|
1
|
50
|
|
|
|
5
|
if (defined $plot->{'twinx.args'}{$set}) { |
|
1608
|
|
|
|
|
|
|
plot_args({ |
|
1609
|
|
|
|
|
|
|
fh => $args->{fh}, |
|
1610
|
1
|
|
|
|
|
9
|
args => $plot->{'twinx.args'}{$set}, |
|
1611
|
|
|
|
|
|
|
ax => "twinx_${ax}_$set_i" |
|
1612
|
|
|
|
|
|
|
}); |
|
1613
|
|
|
|
|
|
|
} |
|
1614
|
|
|
|
|
|
|
} else { |
|
1615
|
7
|
|
|
|
|
12
|
say { $args->{fh} } "ax$args->{ax}.plot(x, y $label $options) # " . __LINE__; |
|
|
7
|
|
|
|
|
23
|
|
|
1616
|
|
|
|
|
|
|
} |
|
1617
|
8
|
|
|
|
|
19
|
$set_i++; |
|
1618
|
|
|
|
|
|
|
} |
|
1619
|
7
|
|
|
|
|
135
|
return 1; |
|
1620
|
|
|
|
|
|
|
} |
|
1621
|
|
|
|
|
|
|
|
|
1622
|
|
|
|
|
|
|
sub scatter_helper { |
|
1623
|
6
|
|
|
6
|
0
|
18
|
my ($args) = @_; |
|
1624
|
6
|
|
|
|
|
72
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
1625
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
1626
|
6
|
50
|
|
|
|
35
|
if ( ref $args ne 'HASH' ) { |
|
1627
|
0
|
|
|
|
|
0
|
die "args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
1628
|
|
|
|
|
|
|
} |
|
1629
|
6
|
|
|
|
|
24
|
my @reqd_args = ( |
|
1630
|
|
|
|
|
|
|
'ax', 'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
1631
|
|
|
|
|
|
|
'plot', # args to original function |
|
1632
|
|
|
|
|
|
|
); |
|
1633
|
6
|
|
|
|
|
29
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
18
|
|
|
|
|
49
|
|
|
1634
|
6
|
50
|
|
|
|
17
|
if ( scalar @undef_args > 0 ) { |
|
1635
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1636
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
1637
|
|
|
|
|
|
|
} |
|
1638
|
6
|
|
|
|
|
24
|
my @opt = (@ax_methods, @cb_arg, @plt_methods, @fig_methods, @arg, 'ax', @{ $opt{$current_sub} }); |
|
|
6
|
|
|
|
|
284
|
|
|
1639
|
6
|
|
|
|
|
15
|
my $plot = $args->{plot}; |
|
1640
|
|
|
|
|
|
|
@undef_args = grep { |
|
1641
|
43
|
|
|
|
|
51
|
my $key = $_; |
|
1642
|
43
|
|
|
|
|
112
|
not grep { $_ eq $key } @opt |
|
|
19995
|
|
|
|
|
20807
|
|
|
1643
|
6
|
|
|
|
|
11
|
} keys %{$plot}; |
|
|
6
|
|
|
|
|
22
|
|
|
1644
|
6
|
50
|
|
|
|
25
|
if ( scalar @undef_args > 0 ) { |
|
1645
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1646
|
0
|
|
|
|
|
0
|
die "The above arguments aren't defined for $plot->{'plot.type'} in $current_sub"; |
|
1647
|
|
|
|
|
|
|
} |
|
1648
|
6
|
|
|
|
|
19
|
my $overall_ref = ref $plot->{data}; |
|
1649
|
6
|
50
|
|
|
|
18
|
if ( $overall_ref ne 'HASH' ) { |
|
1650
|
0
|
|
|
|
|
0
|
die |
|
1651
|
|
|
|
|
|
|
"scatter only takes 1) hashes of arrays (single or 2) hash of hash of arrays; but $overall_ref was entered"; |
|
1652
|
|
|
|
|
|
|
} |
|
1653
|
6
|
|
|
|
|
14
|
my ( %ref_counts, $plot_type ); |
|
1654
|
6
|
|
|
|
|
11
|
foreach my $set ( keys %{ $plot->{data} } ) { |
|
|
6
|
|
|
|
|
49
|
|
|
1655
|
16
|
|
|
|
|
44
|
$ref_counts{ ref $plot->{data}{$set} }++; |
|
1656
|
|
|
|
|
|
|
} |
|
1657
|
6
|
|
|
|
|
13
|
my $ax = $args->{ax}; |
|
1658
|
6
|
50
|
|
|
|
15
|
if ( (scalar keys %ref_counts) > 1 ) { |
|
1659
|
0
|
|
|
|
|
0
|
p $plot->{data}; |
|
1660
|
0
|
|
|
|
|
0
|
die "different kinds of data were entered to plot $ax; should be simple hash or hash of arrays."; |
|
1661
|
|
|
|
|
|
|
} |
|
1662
|
6
|
100
|
|
|
|
22
|
if ( defined $ref_counts{ARRAY} ) { |
|
|
|
50
|
|
|
|
|
|
|
1663
|
4
|
|
|
|
|
7
|
$plot_type = 'single'; |
|
1664
|
|
|
|
|
|
|
} elsif ( defined $ref_counts{HASH} ) { |
|
1665
|
2
|
|
|
|
|
4
|
$plot_type = 'multiple'; |
|
1666
|
|
|
|
|
|
|
} else { |
|
1667
|
0
|
|
|
|
|
0
|
p $plot->{data}; |
|
1668
|
0
|
|
|
|
|
0
|
p %ref_counts; |
|
1669
|
0
|
|
|
|
|
0
|
die 'Could not determine scatter type for the above data.'; |
|
1670
|
|
|
|
|
|
|
} |
|
1671
|
6
|
|
50
|
|
|
32
|
$plot->{cmap} = $plot->{cmap} // 'gist_rainbow'; |
|
1672
|
6
|
|
|
|
|
9
|
foreach my $axis (@{ $plot->{logscale} }) { # x, y |
|
|
6
|
|
|
|
|
14
|
|
|
1673
|
2
|
|
|
|
|
4
|
say {$args->{fh}} "ax$ax.set_$axis" . 'scale("log")'; |
|
|
2
|
|
|
|
|
7
|
|
|
1674
|
|
|
|
|
|
|
} |
|
1675
|
6
|
100
|
|
|
|
21
|
if ( $plot_type eq 'single' ) { # only a single set of data |
|
|
|
50
|
|
|
|
|
|
|
1676
|
4
|
|
|
|
|
5
|
my $options = ''; |
|
1677
|
4
|
|
|
|
|
7
|
my ( $color_key, @keys ); |
|
1678
|
4
|
50
|
|
|
|
10
|
if ( defined $plot->{'keys'} ) { |
|
1679
|
0
|
|
|
|
|
0
|
@keys = @{ $plot->{'keys'} }; |
|
|
0
|
|
|
|
|
0
|
|
|
1680
|
|
|
|
|
|
|
} else { |
|
1681
|
4
|
|
|
|
|
5
|
@keys = sort { lc $a cmp lc $b } keys %{ $plot->{data} }; |
|
|
10
|
|
|
|
|
26
|
|
|
|
4
|
|
|
|
|
24
|
|
|
1682
|
|
|
|
|
|
|
} |
|
1683
|
4
|
|
|
|
|
4
|
my $n_keys = scalar keys %{ $plot->{data} }; |
|
|
4
|
|
|
|
|
9
|
|
|
1684
|
4
|
50
|
33
|
|
|
21
|
if ( ( $n_keys != 2 ) && ( $n_keys != 3 ) ) { |
|
1685
|
0
|
|
|
|
|
0
|
p $plot->{data}; |
|
1686
|
0
|
|
|
|
|
0
|
die "scatterplots can only take 2 or 3 keys as data, but $current_sub received $n_keys"; |
|
1687
|
|
|
|
|
|
|
} |
|
1688
|
4
|
50
|
|
|
|
19
|
if ( defined $plot->{color_key} ) { |
|
|
|
0
|
|
|
|
|
|
|
1689
|
4
|
|
|
|
|
7
|
$color_key = $plot->{color_key}; |
|
1690
|
4
|
|
|
|
|
7
|
@keys = grep {$_ ne $plot->{color_key}} @keys; |
|
|
12
|
|
|
|
|
20
|
|
|
1691
|
|
|
|
|
|
|
} elsif ( scalar @keys == 3 ) { |
|
1692
|
0
|
|
|
|
|
0
|
$color_key = pop @keys; |
|
1693
|
|
|
|
|
|
|
} |
|
1694
|
4
|
|
|
|
|
8
|
foreach my $i (0,1) { |
|
1695
|
8
|
|
|
|
|
11
|
my @undef_i = grep {not defined $plot->{data}{$keys[$i]}[$_]} 0..scalar @{ $plot->{data}{ $keys[$i] } } - 1; |
|
|
240
|
|
|
|
|
278
|
|
|
|
8
|
|
|
|
|
27
|
|
|
1696
|
8
|
50
|
|
|
|
19
|
if (scalar @undef_i > 0) { |
|
1697
|
0
|
|
|
|
|
0
|
p @undef_i; |
|
1698
|
0
|
|
|
|
|
0
|
die "the above indices for $current_sub group $i are undefined."; |
|
1699
|
|
|
|
|
|
|
} |
|
1700
|
|
|
|
|
|
|
} |
|
1701
|
4
|
|
|
|
|
5
|
say { $args->{fh} } 'x = [' . join( ',', @{ $plot->{data}{ $keys[0] } } ) . ']'; |
|
|
4
|
|
|
|
|
7
|
|
|
|
4
|
|
|
|
|
109
|
|
|
1702
|
4
|
|
|
|
|
5
|
say { $args->{fh} } 'y = [' . join( ',', @{ $plot->{data}{ $keys[1] } } ) . ']'; |
|
|
4
|
|
|
|
|
7
|
|
|
|
4
|
|
|
|
|
159
|
|
|
1703
|
4
|
50
|
33
|
|
|
12
|
if ( ( defined $plot->{'set.options'} ) |
|
1704
|
|
|
|
|
|
|
&& ( ref $plot->{'set.options'} eq '' ) ) |
|
1705
|
|
|
|
|
|
|
{ |
|
1706
|
0
|
|
|
|
|
0
|
$options = ", $plot->{'set.options'}"; |
|
1707
|
|
|
|
|
|
|
} |
|
1708
|
4
|
|
|
|
|
9
|
my $cb_opts = ''; |
|
1709
|
4
|
|
|
|
|
10
|
foreach my $o (grep {defined $plot->{$_}} ('cbdrawedges', 'cbpad')) { # numeric |
|
|
8
|
|
|
|
|
16
|
|
|
1710
|
0
|
0
|
|
|
|
0
|
die "$o = $plot->{$o} must be numeric" unless (looks_like_number($plot->{$o})); |
|
1711
|
0
|
|
|
|
|
0
|
my $mpl_opt = $o; |
|
1712
|
0
|
|
|
|
|
0
|
$mpl_opt =~ s/^cb//; |
|
1713
|
0
|
|
|
|
|
0
|
$cb_opts .= ", $mpl_opt = $plot->{$o}"; |
|
1714
|
|
|
|
|
|
|
} |
|
1715
|
4
|
50
|
|
|
|
9
|
if ( defined $color_key ) { |
|
1716
|
4
|
50
|
|
|
|
10
|
if (not defined $plot->{data}{$color_key}) { |
|
1717
|
0
|
|
|
|
|
0
|
die "\"$color_key\" isn't defined for this scatter"; |
|
1718
|
|
|
|
|
|
|
} |
|
1719
|
4
|
|
|
|
|
6
|
say { $args->{fh} } 'z = [' . join( ',', @{ $plot->{data}{$color_key} } ) . ']'; |
|
|
4
|
|
|
|
|
7
|
|
|
|
4
|
|
|
|
|
33
|
|
|
1720
|
4
|
|
|
|
|
6
|
say { $args->{fh} } |
|
|
4
|
|
|
|
|
10
|
|
|
1721
|
|
|
|
|
|
|
"im = ax$ax.scatter(x, y, c = z, cmap = '$plot->{cmap}' $options)"; |
|
1722
|
4
|
|
|
|
|
5
|
say { $args->{fh} } "fig.colorbar(im, label = '$color_key' $cb_opts)"; |
|
|
4
|
|
|
|
|
9
|
|
|
1723
|
|
|
|
|
|
|
} else { |
|
1724
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "ax$ax.scatter(x, y $options)"; |
|
|
0
|
|
|
|
|
0
|
|
|
1725
|
|
|
|
|
|
|
} |
|
1726
|
4
|
|
33
|
|
|
23
|
$plot->{xlabel} = $plot->{xlabel} // $keys[0]; |
|
1727
|
4
|
|
33
|
|
|
83
|
$plot->{ylabel} = $plot->{ylabel} // $keys[1]; |
|
1728
|
|
|
|
|
|
|
} elsif ( $plot_type eq 'multiple' ) { # multiple sets |
|
1729
|
2
|
|
|
|
|
5
|
my @undefined_opts; |
|
1730
|
2
|
|
|
|
|
3
|
foreach my $set ( sort keys %{ $plot->{'set.options'} } ) { |
|
|
2
|
|
|
|
|
18
|
|
|
1731
|
2
|
50
|
|
|
|
3
|
next if grep { $set eq $_ } keys %{ $plot->{data} }; |
|
|
4
|
|
|
|
|
8
|
|
|
|
2
|
|
|
|
|
5
|
|
|
1732
|
0
|
|
|
|
|
0
|
push @undefined_opts, $set; |
|
1733
|
|
|
|
|
|
|
} |
|
1734
|
2
|
50
|
|
|
|
6
|
if ( scalar @undefined_opts > 0 ) { |
|
1735
|
0
|
|
|
|
|
0
|
p $plot->{data}; |
|
1736
|
0
|
|
|
|
|
0
|
p $plot; |
|
1737
|
0
|
|
|
|
|
0
|
say 'The data and options are above, but the following sets have options without data:'; |
|
1738
|
0
|
|
|
|
|
0
|
p @undefined_opts; |
|
1739
|
0
|
|
|
|
|
0
|
die 'no data was defined for the above options'; |
|
1740
|
|
|
|
|
|
|
} |
|
1741
|
2
|
|
|
|
|
3
|
my $color_key; |
|
1742
|
2
|
|
|
|
|
4
|
foreach my $set ( sort keys %{ $plot->{data} } ) { |
|
|
2
|
|
|
|
|
7
|
|
|
1743
|
4
|
|
|
|
|
9
|
my $options = ''; |
|
1744
|
4
|
|
|
|
|
6
|
my @keys; |
|
1745
|
4
|
50
|
|
|
|
15
|
if ( defined $plot->{'keys'} ) { |
|
1746
|
0
|
|
|
|
|
0
|
@keys = @{ $plot->{'keys'} }; |
|
|
0
|
|
|
|
|
0
|
|
|
1747
|
|
|
|
|
|
|
} else { # automatically take the key from the first; further sets should have the same labels |
|
1748
|
4
|
|
|
|
|
8
|
@keys = sort { lc $a cmp lc $b } keys %{ $plot->{data}{$set} }; |
|
|
4
|
|
|
|
|
17
|
|
|
|
4
|
|
|
|
|
24
|
|
|
1749
|
|
|
|
|
|
|
} |
|
1750
|
4
|
|
|
|
|
7
|
my $n_keys = scalar keys %{ $plot->{data}{$set} }; |
|
|
4
|
|
|
|
|
8
|
|
|
1751
|
4
|
50
|
33
|
|
|
12
|
if ( ( $n_keys != 2 ) && ( $n_keys != 3 ) ) { |
|
1752
|
0
|
|
|
|
|
0
|
p $plot->{data}{$set}; |
|
1753
|
0
|
|
|
|
|
0
|
die "scatterplots can only take 2 or 3 keys as data, but $current_sub received $n_keys"; |
|
1754
|
|
|
|
|
|
|
} |
|
1755
|
4
|
|
|
|
|
7
|
foreach my $key (@keys) { |
|
1756
|
8
|
|
|
|
|
12
|
@undef_args = grep {!defined $plot->{data}{$set}{$key}[$_]} 0..scalar @{ $plot->{data}{$set}{$key} } - 1; |
|
|
240
|
|
|
|
|
317
|
|
|
|
8
|
|
|
|
|
22
|
|
|
1757
|
8
|
50
|
|
|
|
20
|
if (scalar @undef_args > 0) { |
|
1758
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1759
|
0
|
|
|
|
|
0
|
die "the above indices for \"$key\" are undefined in $current_sub"; |
|
1760
|
|
|
|
|
|
|
} |
|
1761
|
|
|
|
|
|
|
} |
|
1762
|
4
|
50
|
|
|
|
13
|
if ( defined $plot->{color_key} ) { |
|
|
|
50
|
|
|
|
|
|
|
1763
|
0
|
|
|
|
|
0
|
$color_key = $plot->{color_key}; |
|
1764
|
0
|
|
|
|
|
0
|
@keys = grep {$_ ne $plot->{color_key}} @keys; |
|
|
0
|
|
|
|
|
0
|
|
|
1765
|
|
|
|
|
|
|
} elsif ( scalar @keys == 3 ) { |
|
1766
|
0
|
|
|
|
|
0
|
$color_key = pop @keys; |
|
1767
|
|
|
|
|
|
|
} |
|
1768
|
4
|
50
|
33
|
|
|
18
|
if ( ( not defined $color_key ) && ( $n_keys == 3 ) ) { |
|
1769
|
0
|
|
|
|
|
0
|
$color_key = pop @keys; |
|
1770
|
|
|
|
|
|
|
} |
|
1771
|
4
|
100
|
|
|
|
12
|
if ( defined $plot->{'set.options'}{$set} ) { |
|
1772
|
2
|
|
|
|
|
4
|
$options = ", $plot->{'set.options'}{$set}"; |
|
1773
|
|
|
|
|
|
|
} |
|
1774
|
4
|
|
|
|
|
7
|
say { $args->{fh} } 'x = [' . join( ',', @{ $plot->{data}{$set}{ $keys[0] } } ) . ']'; |
|
|
4
|
|
|
|
|
8
|
|
|
|
4
|
|
|
|
|
181
|
|
|
1775
|
4
|
|
|
|
|
9
|
say { $args->{fh} } 'y = [' . join( ',', @{ $plot->{data}{$set}{ $keys[1] } } ) . ']'; |
|
|
4
|
|
|
|
|
8
|
|
|
|
4
|
|
|
|
|
208
|
|
|
1776
|
4
|
50
|
|
|
|
12
|
if ( defined $color_key ) { |
|
1777
|
0
|
0
|
|
|
|
0
|
if (not defined $plot->{data}{$set}{$color_key}) { |
|
1778
|
0
|
|
|
|
|
0
|
die "\"$color_key\" isn't defined for set \"$set\""; |
|
1779
|
|
|
|
|
|
|
} |
|
1780
|
0
|
|
|
|
|
0
|
say { $args->{fh} } 'z = [' . join( ',', @{ $plot->{data}{$set}{$color_key} } ) . ']'; |
|
|
0
|
|
|
|
|
0
|
|
|
|
0
|
|
|
|
|
0
|
|
|
1781
|
0
|
0
|
|
|
|
0
|
unless ( $options =~ m/label\s*=/ ) { |
|
1782
|
0
|
|
|
|
|
0
|
$options .= ", label = '$set'"; |
|
1783
|
|
|
|
|
|
|
} |
|
1784
|
0
|
|
|
|
|
0
|
say { $args->{fh} } |
|
|
0
|
|
|
|
|
0
|
|
|
1785
|
|
|
|
|
|
|
"im = ax$ax.scatter(x, y, c = z, cmap = '$plot->{cmap}' $options)"; |
|
1786
|
|
|
|
|
|
|
} else { |
|
1787
|
4
|
|
|
|
|
5
|
say { $args->{fh} } "ax$ax.scatter(x, y, label = '$set' $options)"; |
|
|
4
|
|
|
|
|
15
|
|
|
1788
|
|
|
|
|
|
|
} |
|
1789
|
4
|
|
66
|
|
|
20
|
$plot->{xlabel} = $plot->{xlabel} // $keys[0]; |
|
1790
|
4
|
|
66
|
|
|
18
|
$plot->{ylabel} = $plot->{ylabel} // $keys[1]; |
|
1791
|
|
|
|
|
|
|
} |
|
1792
|
2
|
50
|
|
|
|
54
|
say { $args->{fh} } "plt.colorbar(im, label = '$color_key')" if defined $color_key; |
|
|
0
|
|
|
|
|
0
|
|
|
1793
|
|
|
|
|
|
|
} |
|
1794
|
|
|
|
|
|
|
} |
|
1795
|
|
|
|
|
|
|
|
|
1796
|
|
|
|
|
|
|
sub violin_helper { |
|
1797
|
4
|
|
|
4
|
0
|
8
|
my ($args) = @_; |
|
1798
|
4
|
|
|
|
|
72
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
1799
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
1800
|
4
|
50
|
|
|
|
22
|
if ( ref $args ne 'HASH' ) { |
|
1801
|
0
|
|
|
|
|
0
|
die "args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
1802
|
|
|
|
|
|
|
} |
|
1803
|
4
|
|
|
|
|
15
|
my @reqd_args = ( |
|
1804
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
1805
|
|
|
|
|
|
|
'plot', # args to original function |
|
1806
|
|
|
|
|
|
|
); |
|
1807
|
4
|
|
|
|
|
7
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
8
|
|
|
|
|
17
|
|
|
1808
|
4
|
50
|
|
|
|
14
|
if ( scalar @undef_args > 0 ) { |
|
1809
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1810
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
1811
|
|
|
|
|
|
|
} |
|
1812
|
4
|
|
|
|
|
12
|
my @opt = (@ax_methods, @plt_methods, @fig_methods, @arg, 'ax', @{ $opt{$current_sub} }); |
|
|
4
|
|
|
|
|
163
|
|
|
1813
|
4
|
|
|
|
|
10
|
my $plot = $args->{plot}; |
|
1814
|
|
|
|
|
|
|
my @undef_opt = grep { |
|
1815
|
24
|
|
|
|
|
27
|
my $key = $_; |
|
1816
|
24
|
|
|
|
|
66
|
not grep { $_ eq $key } @opt |
|
|
10944
|
|
|
|
|
11454
|
|
|
1817
|
4
|
|
|
|
|
6
|
} keys %{$plot}; |
|
|
4
|
|
|
|
|
11
|
|
|
1818
|
4
|
50
|
|
|
|
14
|
if ( scalar @undef_opt > 0 ) { |
|
1819
|
0
|
|
|
|
|
0
|
p @undef_opt; |
|
1820
|
0
|
|
|
|
|
0
|
die "The above arguments aren't defined for $plot->{'plot.type'} using $current_sub"; |
|
1821
|
|
|
|
|
|
|
} |
|
1822
|
4
|
|
50
|
|
|
28
|
$plot->{orientation} = $plot->{orientation} // 'vertical'; |
|
1823
|
4
|
50
|
|
|
|
28
|
if ( $plot->{orientation} !~ m/^(?:horizontal|vertical)$/ ) { |
|
1824
|
0
|
|
|
|
|
0
|
die "$current_sub needs either \"horizontal\" or \"vertical\", not \"$plot->{orientation}\""; |
|
1825
|
|
|
|
|
|
|
} |
|
1826
|
4
|
100
|
|
|
|
23
|
if (ref $plot->{data} eq 'ARRAY') { |
|
1827
|
2
|
|
|
|
|
5
|
my $tmp = delete $plot->{data}; |
|
1828
|
2
|
|
|
|
|
7
|
$plot->{data}{''} = $tmp; |
|
1829
|
|
|
|
|
|
|
} |
|
1830
|
4
|
|
|
|
|
11
|
my ( @xticks, @key_order ); |
|
1831
|
4
|
50
|
|
|
|
10
|
if ( defined $plot->{'key.order'} ) { |
|
1832
|
0
|
|
|
|
|
0
|
@key_order = @{ $plot->{'key.order'} }; |
|
|
0
|
|
|
|
|
0
|
|
|
1833
|
|
|
|
|
|
|
} else { |
|
1834
|
4
|
|
|
|
|
6
|
@key_order = sort keys %{ $plot->{data} }; |
|
|
4
|
|
|
|
|
19
|
|
|
1835
|
|
|
|
|
|
|
} |
|
1836
|
4
|
|
50
|
|
|
11
|
my $ax = $args->{ax} // ''; |
|
1837
|
4
|
|
50
|
|
|
13
|
$plot->{medians} = $plot->{medians} // 1; # by default, show median values |
|
1838
|
4
|
|
50
|
|
|
18
|
$plot->{whiskers} = $plot->{whiskers} // 1; # by default, make whiskers |
|
1839
|
4
|
|
50
|
|
|
13
|
$plot->{edgecolor} = $plot->{edgecolor} // 'black'; |
|
1840
|
4
|
|
|
|
|
7
|
my $options = ''; # these args go to the plt.hist call |
|
1841
|
4
|
|
|
|
|
5
|
say { $args->{fh} } 'd = []'; |
|
|
4
|
|
|
|
|
13
|
|
|
1842
|
4
|
|
|
|
|
6
|
my $min_n_points = 'inf'; |
|
1843
|
4
|
|
|
|
|
9
|
foreach my $key (@key_order) { |
|
1844
|
5
|
50
|
|
|
|
7
|
@{ $plot->{data}{$key} } = grep { defined && looks_like_number($_) } @{ $plot->{data}{$key} }; |
|
|
5
|
|
|
|
|
12
|
|
|
|
63
|
|
|
|
|
120
|
|
|
|
5
|
|
|
|
|
11
|
|
|
1845
|
5
|
|
|
|
|
10
|
say { $args->{fh} } 'd.append([' |
|
1846
|
5
|
|
|
|
|
7
|
. join( ',', @{ $plot->{data}{$key} } ) . '])'; |
|
|
5
|
|
|
|
|
28
|
|
|
1847
|
5
|
|
|
|
|
6
|
$min_n_points = min( scalar @{ $plot->{data}{$key} }, $min_n_points ); |
|
|
5
|
|
|
|
|
22
|
|
|
1848
|
|
|
|
|
|
|
} |
|
1849
|
4
|
|
|
|
|
6
|
foreach my $axis (@{ $plot->{logscale} }) { # x, y |
|
|
4
|
|
|
|
|
16
|
|
|
1850
|
0
|
0
|
|
|
|
0
|
if ($axis =~ m/^([^xy])$/) { |
|
1851
|
0
|
|
|
|
|
0
|
p $plot->{logscale}; |
|
1852
|
0
|
|
|
|
|
0
|
die "only \"x\" and \"y\" are allowed in boxplot, not \"$axis\""; |
|
1853
|
|
|
|
|
|
|
} |
|
1854
|
0
|
|
|
|
|
0
|
say {$args->{fh}} "ax$ax.set_$axis" . 'scale("log")'; |
|
|
0
|
|
|
|
|
0
|
|
|
1855
|
|
|
|
|
|
|
} |
|
1856
|
4
|
|
|
|
|
5
|
say { $args->{fh} } "vp = ax$ax.violinplot(d, showmeans=False, points = $min_n_points, orientation = '$plot->{orientation}', showmedians = $plot->{medians})"; |
|
|
4
|
|
|
|
|
15
|
|
|
1857
|
4
|
50
|
|
|
|
12
|
if ( defined $plot->{colors} ) { # every hash key should have its own color defined |
|
1858
|
|
|
|
|
|
|
# the below code helps to provide better error messages in case I make an error in calling the sub |
|
1859
|
0
|
|
|
|
|
0
|
my @wrong_keys = grep { not defined $plot->{colors}{$_} } keys %{ $plot->{data} }; |
|
|
0
|
|
|
|
|
0
|
|
|
|
0
|
|
|
|
|
0
|
|
|
1860
|
0
|
0
|
|
|
|
0
|
if ( scalar @wrong_keys > 0 ) { |
|
1861
|
0
|
|
|
|
|
0
|
p $plot; |
|
1862
|
0
|
|
|
|
|
0
|
p @wrong_keys; |
|
1863
|
0
|
|
|
|
|
0
|
die 'the above data keys have no defined color'; |
|
1864
|
|
|
|
|
|
|
} |
|
1865
|
|
|
|
|
|
|
# list of pre-defined colors: https://matplotlib.org/stable/gallery/color/named_colors.html |
|
1866
|
0
|
|
|
|
|
0
|
say { $args->{fh} } 'colors = ["' |
|
1867
|
0
|
|
|
|
|
0
|
. join( '","', @{ $plot->{colors} }{@key_order} ) . '"]'; |
|
|
0
|
|
|
|
|
0
|
|
|
1868
|
|
|
|
|
|
|
|
|
1869
|
|
|
|
|
|
|
# the above color list will have the same order, via the above hash slice |
|
1870
|
0
|
|
|
|
|
0
|
say { $args->{fh} } 'for i, pc in enumerate(vp["bodies"], 1):'; |
|
|
0
|
|
|
|
|
0
|
|
|
1871
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "\tpc.set_facecolor(colors[i-1])"; |
|
|
0
|
|
|
|
|
0
|
|
|
1872
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "\tpc.set_edgecolor('black')"; |
|
|
0
|
|
|
|
|
0
|
|
|
1873
|
|
|
|
|
|
|
} else { |
|
1874
|
4
|
|
|
|
|
4
|
say { $args->{fh} } 'for pc in vp["bodies"]:'; |
|
|
4
|
|
|
|
|
7
|
|
|
1875
|
4
|
50
|
|
|
|
10
|
if ( defined $plot->{color} ) { |
|
1876
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "\tpc.set_facecolor('$plot->{color}')"; |
|
|
0
|
|
|
|
|
0
|
|
|
1877
|
|
|
|
|
|
|
} |
|
1878
|
4
|
|
|
|
|
4
|
say { $args->{fh} } "\tpc.set_edgecolor('black')"; |
|
|
4
|
|
|
|
|
7
|
|
|
1879
|
|
|
|
|
|
|
|
|
1880
|
|
|
|
|
|
|
# say {$args->{fh}} "\tpc.set_alpha(1)"; |
|
1881
|
|
|
|
|
|
|
} |
|
1882
|
4
|
50
|
|
|
|
15
|
if ( $plot->{whiskers} ) { |
|
1883
|
|
|
|
|
|
|
# https://matplotlib.org/stable/gallery/statistics/customized_violin.html |
|
1884
|
4
|
|
|
|
|
5
|
say {$args->{fh} } 'import numpy as np'; |
|
|
4
|
|
|
|
|
8
|
|
|
1885
|
4
|
|
|
|
|
7
|
say {$args->{fh} } 'def adjacent_values(vals, q1, q3):'; |
|
|
4
|
|
|
|
|
7
|
|
|
1886
|
4
|
|
|
|
|
5
|
say {$args->{fh} } ' upper_adjacent_value = q3 + (q3 - q1) * 1.5'; |
|
|
4
|
|
|
|
|
7
|
|
|
1887
|
4
|
|
|
|
|
4
|
say {$args->{fh} } |
|
|
4
|
|
|
|
|
16
|
|
|
1888
|
|
|
|
|
|
|
' upper_adjacent_value = np.clip(upper_adjacent_value, q3, vals[-1])'; |
|
1889
|
4
|
|
|
|
|
4
|
say {$args->{fh} } ' lower_adjacent_value = q1 - (q3 - q1) * 1.5'; |
|
|
4
|
|
|
|
|
6
|
|
|
1890
|
4
|
|
|
|
|
4
|
say {$args->{fh} } |
|
|
4
|
|
|
|
|
8
|
|
|
1891
|
|
|
|
|
|
|
' lower_adjacent_value = np.clip(lower_adjacent_value, vals[0], q1)'; |
|
1892
|
4
|
|
|
|
|
4
|
say {$args->{fh} } |
|
|
4
|
|
|
|
|
7
|
|
|
1893
|
|
|
|
|
|
|
' return lower_adjacent_value, upper_adjacent_value'; |
|
1894
|
4
|
|
|
|
|
5
|
say {$args->{fh} } 'np_data = np.array(d, dtype = object)'; |
|
|
4
|
|
|
|
|
6
|
|
|
1895
|
4
|
|
|
|
|
6
|
say {$args->{fh} } 'quartile1 = []'; |
|
|
4
|
|
|
|
|
6
|
|
|
1896
|
4
|
|
|
|
|
4
|
say {$args->{fh} } 'medians = []'; |
|
|
4
|
|
|
|
|
6
|
|
|
1897
|
4
|
|
|
|
|
4
|
say {$args->{fh} } 'quartile3 = []'; |
|
|
4
|
|
|
|
|
6
|
|
|
1898
|
4
|
|
|
|
|
4
|
say {$args->{fh} } 'for subset in list(range(0, len(np_data))):'; |
|
|
4
|
|
|
|
|
7
|
|
|
1899
|
4
|
|
|
|
|
4
|
say {$args->{fh}} ' local_quartile1, local_medians, local_quartile3 = np.percentile(d[subset], [25, 50, 75])' . "\n"; |
|
|
4
|
|
|
|
|
9
|
|
|
1900
|
4
|
|
|
|
|
5
|
say {$args->{fh}} ' quartile1.append(local_quartile1)'; |
|
|
4
|
|
|
|
|
6
|
|
|
1901
|
4
|
|
|
|
|
4
|
say {$args->{fh}} ' medians.append(local_medians)'; |
|
|
4
|
|
|
|
|
5
|
|
|
1902
|
4
|
|
|
|
|
5
|
say {$args->{fh}} ' quartile3.append(local_quartile3)'; |
|
|
4
|
|
|
|
|
18
|
|
|
1903
|
4
|
|
|
|
|
6
|
say {$args->{fh}} 'whiskers = np.array(['; |
|
|
4
|
|
|
|
|
4
|
|
|
1904
|
4
|
|
|
|
|
5
|
say {$args->{fh}} ' adjacent_values(sorted_array, q1, q3)'; |
|
|
4
|
|
|
|
|
48
|
|
|
1905
|
4
|
|
|
|
|
7
|
say {$args->{fh}} ' for sorted_array, q1, q3 in zip(d, quartile1, quartile3)])'; |
|
|
4
|
|
|
|
|
152
|
|
|
1906
|
4
|
|
|
|
|
9
|
say {$args->{fh}} 'whiskers_min, whiskers_max = whiskers[:, 0], whiskers[:, 1]'; |
|
|
4
|
|
|
|
|
9
|
|
|
1907
|
4
|
|
|
|
|
6
|
say {$args->{fh}} 'inds = np.arange(1, len(medians) + 1)'; |
|
|
4
|
|
|
|
|
7
|
|
|
1908
|
4
|
50
|
|
|
|
10
|
if ( $plot->{orientation} eq 'vertical' ) { |
|
1909
|
4
|
|
|
|
|
12
|
say { $args->{fh} } "ax$ax" |
|
|
4
|
|
|
|
|
12
|
|
|
1910
|
|
|
|
|
|
|
. '.vlines(inds, quartile1, quartile3, color="k", linestyle="-", lw=5)'; |
|
1911
|
4
|
|
|
|
|
6
|
say { $args->{fh} } "ax$ax" |
|
|
4
|
|
|
|
|
11
|
|
|
1912
|
|
|
|
|
|
|
. '.vlines(inds, whiskers_min, whiskers_max, color="k", linestyle="-", lw=1)'; |
|
1913
|
|
|
|
|
|
|
} else { |
|
1914
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "ax$ax" |
|
|
0
|
|
|
|
|
0
|
|
|
1915
|
|
|
|
|
|
|
. '.hlines(inds, quartile1, quartile3, color="k", linestyle="-", lw=5)'; |
|
1916
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "ax$ax" |
|
|
0
|
|
|
|
|
0
|
|
|
1917
|
|
|
|
|
|
|
. '.hlines(inds, whiskers_min, whiskers_max, color="k", linestyle="-", lw=1)'; |
|
1918
|
|
|
|
|
|
|
} |
|
1919
|
|
|
|
|
|
|
} |
|
1920
|
4
|
|
|
|
|
7
|
foreach my $key (@key_order) { |
|
1921
|
|
|
|
|
|
|
push @xticks, "$key (" |
|
1922
|
5
|
|
|
|
|
11
|
. format_commas( scalar @{ $plot->{data}{$key} }, '%.0u' ) . ')'; |
|
|
5
|
|
|
|
|
19
|
|
|
1923
|
5
|
50
|
|
|
|
12
|
if ( $plot->{orientation} eq 'vertical' ) { |
|
1924
|
5
|
|
|
|
|
17
|
say { $args->{fh} } "ax$ax.plot(" |
|
1925
|
|
|
|
|
|
|
. scalar @xticks . ', ' |
|
1926
|
5
|
|
|
|
|
7
|
. ( sum( @{ $plot->{data}{$key} } ) / scalar @{ $plot->{data}{$key} } ) |
|
|
5
|
|
|
|
|
31
|
|
|
|
5
|
|
|
|
|
66
|
|
|
1927
|
|
|
|
|
|
|
. ', "ro")'; # plot mean point, which is red |
|
1928
|
|
|
|
|
|
|
} else { # orientation = horizontal |
|
1929
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "ax$ax.plot(" |
|
1930
|
0
|
|
|
|
|
0
|
. ( sum( @{ $plot->{data}{$key} } ) / scalar @{ $plot->{data}{$key} } ) |
|
|
0
|
|
|
|
|
0
|
|
|
|
0
|
|
|
|
|
0
|
|
|
1931
|
|
|
|
|
|
|
. ', ' . scalar @xticks . ', "ro")'; # plot mean point, which is red |
|
1932
|
|
|
|
|
|
|
} |
|
1933
|
|
|
|
|
|
|
} |
|
1934
|
4
|
50
|
|
|
|
11
|
if ( $plot->{orientation} eq 'vertical' ) { |
|
1935
|
4
|
|
|
|
|
4
|
say { $args->{fh} } "ax$ax.set_xticks([" |
|
|
4
|
|
|
|
|
82
|
|
|
1936
|
|
|
|
|
|
|
. join( ',', 1 .. scalar @key_order ) . '], ["' |
|
1937
|
|
|
|
|
|
|
. join( '","', @xticks ) . '"])'; |
|
1938
|
|
|
|
|
|
|
} else { |
|
1939
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "ax$ax.set_yticks([" |
|
|
0
|
|
|
|
|
0
|
|
|
1940
|
|
|
|
|
|
|
. join( ',', 1 .. scalar @key_order ) . '], ["' |
|
1941
|
|
|
|
|
|
|
. join( '","', @xticks ) . '"])'; |
|
1942
|
|
|
|
|
|
|
} |
|
1943
|
|
|
|
|
|
|
} |
|
1944
|
|
|
|
|
|
|
|
|
1945
|
|
|
|
|
|
|
sub wide_helper { |
|
1946
|
3
|
|
|
3
|
0
|
8
|
my ($args) = @_; |
|
1947
|
3
|
|
|
|
|
46
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
1948
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
1949
|
3
|
50
|
|
|
|
24
|
if ( ref $args ne 'HASH' ) { |
|
1950
|
0
|
|
|
|
|
0
|
die "args must be given as a hash ref, e.g. \"$current_sub({ data => \@blah })\""; |
|
1951
|
|
|
|
|
|
|
} |
|
1952
|
3
|
|
|
|
|
19
|
my @reqd_args = ( |
|
1953
|
|
|
|
|
|
|
'fh', # e.g. $py, $fh, which will be passed by the subroutine |
|
1954
|
|
|
|
|
|
|
'plot', # args to original function |
|
1955
|
|
|
|
|
|
|
); |
|
1956
|
3
|
|
|
|
|
9
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
6
|
|
|
|
|
18
|
|
|
1957
|
3
|
50
|
|
|
|
11
|
if ( scalar @undef_args > 0 ) { |
|
1958
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
1959
|
0
|
|
|
|
|
0
|
die "the above args are necessary for $current_sub, but were not defined."; |
|
1960
|
|
|
|
|
|
|
} |
|
1961
|
3
|
|
|
|
|
15
|
my @opt = (@ax_methods, @plt_methods, @fig_methods, @arg, 'ax', @{ $opt{$current_sub} }); |
|
|
3
|
|
|
|
|
144
|
|
|
1962
|
3
|
|
|
|
|
7
|
my $plot = $args->{plot}; |
|
1963
|
3
|
|
50
|
|
|
21
|
$plot->{'show.legend'} = $plot->{'show.legend'} // 1; |
|
1964
|
|
|
|
|
|
|
my @undef_opt = grep { |
|
1965
|
24
|
|
|
|
|
30
|
my $key = $_; |
|
1966
|
24
|
|
|
|
|
70
|
not grep { $_ eq $key } @opt |
|
|
10824
|
|
|
|
|
11389
|
|
|
1967
|
3
|
|
|
|
|
7
|
} keys %{$plot}; |
|
|
3
|
|
|
|
|
13
|
|
|
1968
|
3
|
50
|
|
|
|
14
|
if ( scalar @undef_opt > 0 ) { |
|
1969
|
0
|
|
|
|
|
0
|
p @undef_opt; |
|
1970
|
0
|
|
|
|
|
0
|
die |
|
1971
|
|
|
|
|
|
|
"The above arguments aren't defined for $plot->{'plot.type'} using $current_sub"; |
|
1972
|
|
|
|
|
|
|
} |
|
1973
|
3
|
|
|
|
|
5
|
say { $args->{fh} } 'import numpy as np'; |
|
|
3
|
|
|
|
|
13
|
|
|
1974
|
3
|
|
50
|
|
|
9
|
my $ax = $args->{ax} // ''; |
|
1975
|
3
|
|
|
|
|
9
|
my $ref_type = ref $plot->{data}; |
|
1976
|
3
|
100
|
|
|
|
13
|
if ( $ref_type eq 'HASH' ) { # multiple groups, no label |
|
|
|
50
|
|
|
|
|
|
|
1977
|
1
|
|
|
|
|
3
|
foreach my $group ( keys %{ $plot->{data} } ) { |
|
|
1
|
|
|
|
|
4
|
|
|
1978
|
2
|
|
50
|
|
|
8
|
my $color = $plot->{color}{$group} // 'b'; |
|
1979
|
2
|
|
|
|
|
3
|
say { $args->{fh} } 'ys = []'; |
|
|
2
|
|
|
|
|
94
|
|
|
1980
|
2
|
|
|
|
|
4
|
my ( $min_x, $max_x ) = ( 'inf', '-inf' ); |
|
1981
|
2
|
|
|
|
|
5
|
foreach my $run ( 0 .. scalar @{ $plot->{data}{$group} } - 1 ) { |
|
|
2
|
|
|
|
|
6
|
|
|
1982
|
6
|
|
|
|
|
7
|
$min_x = min( $min_x, @{ $plot->{data}{$group}[$run][0] } ); |
|
|
6
|
|
|
|
|
21
|
|
|
1983
|
6
|
|
|
|
|
8
|
$max_x = max( $max_x, @{ $plot->{data}{$group}[$run][0] } ); |
|
|
6
|
|
|
|
|
17
|
|
|
1984
|
|
|
|
|
|
|
} |
|
1985
|
2
|
|
|
|
|
2
|
say { $args->{fh} } "base_y = np.linspace($max_x, $min_x, 101)"; |
|
|
2
|
|
|
|
|
13
|
|
|
1986
|
2
|
|
|
|
|
2
|
foreach my $run ( 0 .. scalar @{ $plot->{data}{$group} } - 1 ) { |
|
|
2
|
|
|
|
|
5
|
|
|
1987
|
6
|
|
|
|
|
7
|
say { $args->{fh} } 'x = [' |
|
1988
|
6
|
|
|
|
|
7
|
. join( ',', @{ $plot->{data}{$group}[$run][0] } ) . ']'; |
|
|
6
|
|
|
|
|
134
|
|
|
1989
|
6
|
|
|
|
|
6
|
say { $args->{fh} } 'y = [' |
|
1990
|
6
|
|
|
|
|
7
|
. join( ',', @{ $plot->{data}{$group}[$run][1] } ) . ']'; |
|
|
6
|
|
|
|
|
236
|
|
|
1991
|
6
|
|
|
|
|
10
|
say { $args->{fh} } "ax$ax.plot(x, y, '$color', alpha=0.15)"; |
|
|
6
|
|
|
|
|
10
|
|
|
1992
|
6
|
|
|
|
|
7
|
say { $args->{fh} } 'y = np.interp(base_y, x, y)'; |
|
|
6
|
|
|
|
|
8
|
|
|
1993
|
6
|
|
|
|
|
7
|
say { $args->{fh} } 'ys.append(y)'; |
|
|
6
|
|
|
|
|
9
|
|
|
1994
|
|
|
|
|
|
|
} |
|
1995
|
2
|
|
|
|
|
3
|
say { $args->{fh} } 'ys = np.array(ys)'; |
|
|
2
|
|
|
|
|
3
|
|
|
1996
|
2
|
|
|
|
|
4
|
say { $args->{fh} } 'mean_ys = ys.mean(axis=0)'; |
|
|
2
|
|
|
|
|
3
|
|
|
1997
|
2
|
|
|
|
|
3
|
say { $args->{fh} } 'std = ys.std(axis=0)'; |
|
|
2
|
|
|
|
|
3
|
|
|
1998
|
2
|
|
|
|
|
3
|
say { $args->{fh} } 'ys_upper = mean_ys + std'; |
|
|
2
|
|
|
|
|
2
|
|
|
1999
|
2
|
|
|
|
|
2
|
say { $args->{fh} } 'ys_lower = mean_ys - std'; |
|
|
2
|
|
|
|
|
3
|
|
|
2000
|
2
|
50
|
|
|
|
6
|
if ( $plot->{'show.legend'} > 0 ) { |
|
2001
|
2
|
|
|
|
|
2
|
say { $args->{fh} } "ax$ax.plot(base_y, mean_ys, '$color', label = '$group')"; |
|
|
2
|
|
|
|
|
4
|
|
|
2002
|
|
|
|
|
|
|
} else { |
|
2003
|
0
|
|
|
|
|
0
|
say { $args->{fh} } "ax$ax.plot(base_y, mean_ys, '$color')"; |
|
|
0
|
|
|
|
|
0
|
|
|
2004
|
|
|
|
|
|
|
} |
|
2005
|
2
|
|
|
|
|
3
|
say { $args->{fh} } |
|
|
2
|
|
|
|
|
21
|
|
|
2006
|
|
|
|
|
|
|
"ax$ax.fill_between(base_y, ys_lower, ys_upper, color='$color', alpha=0.3)"; |
|
2007
|
|
|
|
|
|
|
} |
|
2008
|
|
|
|
|
|
|
} elsif ( $ref_type eq 'ARRAY' ) { |
|
2009
|
2
|
|
50
|
|
|
6
|
my $color = $plot->{color} // 'b'; |
|
2010
|
2
|
|
|
|
|
3
|
say { $args->{fh} } 'ys = []'; |
|
|
2
|
|
|
|
|
5
|
|
|
2011
|
2
|
|
|
|
|
5
|
my ( $min_x, $max_x ) = ( 'inf', '-inf' ); |
|
2012
|
2
|
|
|
|
|
4
|
foreach my $run ( 0 .. scalar @{ $plot->{data} } - 1 ) { |
|
|
2
|
|
|
|
|
13
|
|
|
2013
|
6
|
|
|
|
|
9
|
$min_x = min( $min_x, @{ $plot->{data}[$run][0] } ); |
|
|
6
|
|
|
|
|
22
|
|
|
2014
|
6
|
|
|
|
|
6
|
$max_x = max( $max_x, @{ $plot->{data}[$run][0] } ); |
|
|
6
|
|
|
|
|
15
|
|
|
2015
|
|
|
|
|
|
|
} |
|
2016
|
2
|
|
|
|
|
4
|
say { $args->{fh} } "base_y = np.linspace($max_x, $min_x, 101)"; |
|
|
2
|
|
|
|
|
14
|
|
|
2017
|
2
|
|
|
|
|
4
|
foreach my $run ( 0 .. scalar @{ $plot->{data} } - 1 ) { |
|
|
2
|
|
|
|
|
5
|
|
|
2018
|
6
|
|
|
|
|
11
|
say { $args->{fh} } 'x = [' |
|
2019
|
6
|
|
|
|
|
9
|
. join( ',', @{ $plot->{data}[$run][0] } ) . ']'; |
|
|
6
|
|
|
|
|
156
|
|
|
2020
|
6
|
|
|
|
|
8
|
say { $args->{fh} } 'y = [' |
|
2021
|
6
|
|
|
|
|
10
|
. join( ',', @{ $plot->{data}[$run][1] } ) . ']'; |
|
|
6
|
|
|
|
|
359
|
|
|
2022
|
6
|
|
|
|
|
14
|
say { $args->{fh} } "ax$ax.plot(x, y, '$color', alpha=0.15)"; |
|
|
6
|
|
|
|
|
16
|
|
|
2023
|
6
|
|
|
|
|
8
|
say { $args->{fh} } 'y = np.interp(base_y, x, y)'; |
|
|
6
|
|
|
|
|
9
|
|
|
2024
|
6
|
|
|
|
|
9
|
say { $args->{fh} } 'ys.append(y)'; |
|
|
6
|
|
|
|
|
12
|
|
|
2025
|
|
|
|
|
|
|
} |
|
2026
|
2
|
|
|
|
|
3
|
say { $args->{fh} } 'ys = np.array(ys)'; |
|
|
2
|
|
|
|
|
5
|
|
|
2027
|
2
|
|
|
|
|
2
|
say { $args->{fh} } 'mean_ys = ys.mean(axis=0)'; |
|
|
2
|
|
|
|
|
3
|
|
|
2028
|
2
|
|
|
|
|
3
|
say { $args->{fh} } 'std = ys.std(axis=0)'; |
|
|
2
|
|
|
|
|
4
|
|
|
2029
|
2
|
|
|
|
|
3
|
say { $args->{fh} } 'ys_upper = mean_ys + std'; |
|
|
2
|
|
|
|
|
4
|
|
|
2030
|
2
|
|
|
|
|
2
|
say { $args->{fh} } 'ys_lower = mean_ys - std'; |
|
|
2
|
|
|
|
|
5
|
|
|
2031
|
2
|
|
|
|
|
3
|
say { $args->{fh} } "ax$ax.plot(base_y, mean_ys, '$color')"; |
|
|
2
|
|
|
|
|
5
|
|
|
2032
|
2
|
|
|
|
|
2
|
say { $args->{fh} } |
|
|
2
|
|
|
|
|
38
|
|
|
2033
|
|
|
|
|
|
|
"ax$ax.fill_between(base_y, ys_lower, ys_upper, color='$color', alpha=0.3)"; |
|
2034
|
|
|
|
|
|
|
} else { |
|
2035
|
0
|
|
|
|
|
0
|
die "$current_sub cannot take ref type \"$ref_type\" for \"data\""; |
|
2036
|
|
|
|
|
|
|
} |
|
2037
|
|
|
|
|
|
|
} |
|
2038
|
|
|
|
|
|
|
|
|
2039
|
|
|
|
|
|
|
sub print_type { |
|
2040
|
7
|
|
|
7
|
0
|
13
|
my $str = shift; |
|
2041
|
7
|
|
|
|
|
12
|
my $type = 'no quotes'; |
|
2042
|
7
|
100
|
|
|
|
21
|
if (looks_like_number($str)) { # numbers (e.g. 0.8) must not be quoted |
|
2043
|
6
|
|
|
|
|
15
|
return 'no quotes'; |
|
2044
|
|
|
|
|
|
|
} |
|
2045
|
1
|
50
|
|
|
|
4
|
if ($str =~ m/\w+\h*=\h*["'\(]/) { |
|
2046
|
0
|
|
|
|
|
0
|
return 'no quotes'; |
|
2047
|
|
|
|
|
|
|
} |
|
2048
|
1
|
50
|
0
|
|
|
14
|
if ($str =~ m/^\w+$/) { |
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
2049
|
1
|
|
|
|
|
3
|
return 'single quotes'; |
|
2050
|
|
|
|
|
|
|
} elsif ($str =~ m/^\[\h*\-?\d.+\d\h*\]$/) { |
|
2051
|
0
|
|
|
|
|
0
|
return 'no quotes'; |
|
2052
|
|
|
|
|
|
|
} elsif ($str =~ m/[!@#\$\%^&*\(\)\{\}\[\]\<\>,\/\-\h:;\+=\w]+$/) { |
|
2053
|
0
|
|
|
|
|
0
|
return 'single quotes'; |
|
2054
|
|
|
|
|
|
|
} elsif (($str =~ m/,/) && ($str !~ m/[\]\[]/)) { |
|
2055
|
0
|
|
|
|
|
0
|
return 'single quotes'; |
|
2056
|
|
|
|
|
|
|
} |
|
2057
|
0
|
|
|
|
|
0
|
return $type; |
|
2058
|
|
|
|
|
|
|
} |
|
2059
|
|
|
|
|
|
|
my @all_opt; |
|
2060
|
|
|
|
|
|
|
foreach my $type (keys %opt) { |
|
2061
|
|
|
|
|
|
|
push @all_opt, @{ $opt{$type} }; |
|
2062
|
|
|
|
|
|
|
} |
|
2063
|
|
|
|
|
|
|
sub normalise_p { |
|
2064
|
|
|
|
|
|
|
# "p" is a flat list of subplots: ONE array element == ONE subplot. |
|
2065
|
|
|
|
|
|
|
# p => [ \%h, \%h, ... ] each hash is its own subplot |
|
2066
|
|
|
|
|
|
|
# p => [ \%h, [ \%h, \%h ], \%h, ... ] an inner array of hashes is a |
|
2067
|
|
|
|
|
|
|
# single subplot holding several |
|
2068
|
|
|
|
|
|
|
# plots on the same axes (the 1st |
|
2069
|
|
|
|
|
|
|
# hash is the base plot, the rest |
|
2070
|
|
|
|
|
|
|
# are "add"itions/overlays) |
|
2071
|
|
|
|
|
|
|
# The plain-hash and inner-array forms may be mixed freely in one "p". |
|
2072
|
|
|
|
|
|
|
# Using "p" means top-level "plot.type"/"data" are not used. If no grid is |
|
2073
|
|
|
|
|
|
|
# given, the subplots are laid out on an automatically-sized near-square |
|
2074
|
|
|
|
|
|
|
# grid; pass nrow(s)/ncol(s) to override. |
|
2075
|
17
|
|
|
17
|
0
|
35
|
my ( $args, $current_sub ) = @_; |
|
2076
|
17
|
|
50
|
|
|
43
|
$current_sub = $current_sub // 'plt'; |
|
2077
|
17
|
|
|
|
|
27
|
my $p = delete $args->{p}; |
|
2078
|
17
|
100
|
|
|
|
50
|
if ( ref $p ne 'ARRAY' ) { |
|
2079
|
1
|
|
|
|
|
31
|
die "$current_sub: \"p\" must be an ARRAY reference (one element per subplot)"; |
|
2080
|
|
|
|
|
|
|
} |
|
2081
|
16
|
100
|
|
|
|
22
|
if ( scalar @{$p} == 0 ) { |
|
|
16
|
|
|
|
|
43
|
|
|
2082
|
1
|
|
|
|
|
10
|
die "$current_sub: \"p\" is empty"; |
|
2083
|
|
|
|
|
|
|
} |
|
2084
|
|
|
|
|
|
|
# "p" supersedes the older interface; forbid mixing to avoid ambiguity |
|
2085
|
15
|
|
|
|
|
45
|
foreach my $clash ( grep { defined $args->{$_} } ( 'plot.type', 'data', 'plots', 'add' ) ) { |
|
|
60
|
|
|
|
|
122
|
|
|
2086
|
4
|
|
|
|
|
40
|
die "$current_sub: \"$clash\" cannot be combined with \"p\""; |
|
2087
|
|
|
|
|
|
|
} |
|
2088
|
11
|
|
|
|
|
16
|
my @plots; |
|
2089
|
11
|
|
|
|
|
19
|
my $i = 0; |
|
2090
|
11
|
|
|
|
|
16
|
foreach my $subplot ( @{$p} ) { |
|
|
11
|
|
|
|
|
97
|
|
|
2091
|
21
|
|
|
|
|
34
|
my $ref = ref $subplot; |
|
2092
|
21
|
100
|
|
|
|
62
|
if ( $ref eq 'HASH' ) { # one subplot, one plot |
|
|
|
100
|
|
|
|
|
|
|
2093
|
16
|
|
|
|
|
23
|
push @plots, { %{$subplot} }; # shallow copy; don't mutate caller |
|
|
16
|
|
|
|
|
53
|
|
|
2094
|
|
|
|
|
|
|
} elsif ( $ref eq 'ARRAY' ) { # one subplot, several overlaid plots |
|
2095
|
4
|
100
|
|
|
|
9
|
if ( scalar @{$subplot} == 0 ) { |
|
|
4
|
|
|
|
|
12
|
|
|
2096
|
1
|
|
|
|
|
29
|
die "$current_sub: subplot $i in \"p\" is an empty array"; |
|
2097
|
|
|
|
|
|
|
} |
|
2098
|
3
|
|
|
|
|
5
|
my @g = @{$subplot}; |
|
|
3
|
|
|
|
|
7
|
|
|
2099
|
3
|
|
|
|
|
6
|
my $main = shift @g; # 1st hash is the base plot |
|
2100
|
3
|
|
|
|
|
8
|
foreach my $plot ( $main, @g ) { |
|
2101
|
5
|
100
|
|
|
|
13
|
if ( ref $plot ne 'HASH' ) { |
|
2102
|
1
|
|
|
|
|
12
|
die "$current_sub: subplot $i in \"p\": every plot must be a HASH reference"; |
|
2103
|
|
|
|
|
|
|
} |
|
2104
|
|
|
|
|
|
|
} |
|
2105
|
2
|
|
|
|
|
5
|
my %plot = %{$main}; # shallow copy of the base plot |
|
|
2
|
|
|
|
|
8
|
|
|
2106
|
2
|
50
|
|
|
|
8
|
push @{ $plot{add} }, @g if scalar @g; # the rest overlay on the same axes |
|
|
2
|
|
|
|
|
6
|
|
|
2107
|
2
|
|
|
|
|
5
|
push @plots, \%plot; |
|
2108
|
|
|
|
|
|
|
} else { |
|
2109
|
1
|
|
|
|
|
29
|
die "$current_sub: subplot $i in \"p\" must be a HASH reference (one plot) or an ARRAY of HASH references (overlaid plots), not a \"$ref\" reference"; |
|
2110
|
|
|
|
|
|
|
} |
|
2111
|
18
|
|
|
|
|
25
|
$i++; |
|
2112
|
|
|
|
|
|
|
} |
|
2113
|
8
|
|
|
|
|
21
|
$args->{plots} = \@plots; |
|
2114
|
|
|
|
|
|
|
# convenience: choose a subplot grid. With neither dimension given, use a |
|
2115
|
|
|
|
|
|
|
# near-square grid; with exactly one given (and positive), derive the other |
|
2116
|
|
|
|
|
|
|
# so e.g. "ncols => 1" stacks the subplots in a single column. Empty |
|
2117
|
|
|
|
|
|
|
# trailing cells are pruned later by the engine. |
|
2118
|
8
|
|
|
|
|
13
|
my $n = scalar @plots; |
|
2119
|
8
|
|
66
|
|
|
62
|
my $ncols = $args->{ncols} // $args->{ncol}; |
|
2120
|
8
|
|
66
|
|
|
34
|
my $nrows = $args->{nrows} // $args->{nrow}; |
|
2121
|
8
|
100
|
100
|
|
|
69
|
if ( ( not defined $ncols ) && ( not defined $nrows ) ) { |
|
|
|
100
|
66
|
|
|
|
|
|
|
|
100
|
66
|
|
|
|
|
|
2122
|
4
|
|
|
|
|
8
|
$ncols = 1; |
|
2123
|
4
|
|
|
|
|
12
|
$ncols++ while ( $ncols * $ncols ) < $n; # ceil(sqrt $n), no floats |
|
2124
|
4
|
|
|
|
|
12
|
$args->{ncols} = $ncols; |
|
2125
|
4
|
|
|
|
|
16
|
$args->{nrows} = int( ( $n + $ncols - 1 ) / $ncols ); # ceil($n / $ncols) |
|
2126
|
|
|
|
|
|
|
} elsif ( ( not defined $ncols ) && ( $nrows > 0 ) ) { # only rows given |
|
2127
|
1
|
|
|
|
|
23
|
$args->{ncols} = int( ( $n + $nrows - 1 ) / $nrows ); |
|
2128
|
|
|
|
|
|
|
} elsif ( ( not defined $nrows ) && ( $ncols > 0 ) ) { # only cols given |
|
2129
|
2
|
|
|
|
|
11
|
$args->{nrows} = int( ( $n + $ncols - 1 ) / $ncols ); |
|
2130
|
|
|
|
|
|
|
} |
|
2131
|
8
|
|
|
|
|
18
|
return $args; |
|
2132
|
|
|
|
|
|
|
} |
|
2133
|
|
|
|
|
|
|
sub plt { |
|
2134
|
78
|
|
|
78
|
0
|
3318095
|
my $current_sub = ( split( /::/, ( caller(0) )[3] ) )[-1] |
|
2135
|
|
|
|
|
|
|
; # https://stackoverflow.com/questions/2559792/how-can-i-get-the-name-of-the-current-subroutine-in-perl |
|
2136
|
|
|
|
|
|
|
# Accept BOTH calling conventions: |
|
2137
|
|
|
|
|
|
|
# new style: plt( key => value, ... ) |
|
2138
|
|
|
|
|
|
|
# back-compatible: plt({ key => value, ... }) |
|
2139
|
78
|
|
|
|
|
673
|
my $args; |
|
2140
|
78
|
100
|
66
|
|
|
498
|
if ( ( scalar @_ == 1 ) && ( ref $_[0] eq 'HASH' ) ) { |
|
|
|
50
|
|
|
|
|
|
|
2141
|
29
|
|
|
|
|
45
|
$args = $_[0]; # plt({ ... }) |
|
2142
|
|
|
|
|
|
|
} elsif ( ( scalar @_ % 2 ) == 0 ) { |
|
2143
|
49
|
|
|
|
|
297
|
$args = { @_ }; # plt( ... ) |
|
2144
|
|
|
|
|
|
|
} else { |
|
2145
|
0
|
|
|
|
|
0
|
die "$current_sub: odd number of arguments; call as $current_sub( key => value, ... ) or $current_sub({ key => value, ... })"; |
|
2146
|
|
|
|
|
|
|
} |
|
2147
|
|
|
|
|
|
|
# fold the "p" interface into the engine's internal plot model |
|
2148
|
78
|
100
|
|
|
|
244
|
normalise_p( $args, $current_sub ) if defined $args->{p}; |
|
2149
|
69
|
50
|
|
|
|
149
|
if ((scalar grep {$args->{$_}} ('output.file', 'show')) == 0) { |
|
|
138
|
|
|
|
|
341
|
|
|
2150
|
0
|
|
|
|
|
0
|
p $args; |
|
2151
|
0
|
|
|
|
|
0
|
die 'either "show" or "output.file" must be defined'; |
|
2152
|
|
|
|
|
|
|
} |
|
2153
|
69
|
100
|
|
|
|
185
|
my @reqd_args = $args->{show} ? () : ('output.file'); # e.g. "my_image.svg"; optional if "show" is set |
|
2154
|
69
|
|
|
|
|
110
|
my $single_example = 'plt({ |
|
2155
|
|
|
|
|
|
|
\'output.file\' => \'/tmp/gospel.word.counts.svg\', |
|
2156
|
|
|
|
|
|
|
\'plot.type\' => \'bar\', |
|
2157
|
|
|
|
|
|
|
data => { |
|
2158
|
|
|
|
|
|
|
\'Matthew\' => 18345, |
|
2159
|
|
|
|
|
|
|
\'Mark\' => 11304, |
|
2160
|
|
|
|
|
|
|
\'Luke\' => 19482, |
|
2161
|
|
|
|
|
|
|
\'John\' => 15635, |
|
2162
|
|
|
|
|
|
|
} |
|
2163
|
|
|
|
|
|
|
});'; |
|
2164
|
69
|
|
|
|
|
135
|
my $multi_example = 'plt({ |
|
2165
|
|
|
|
|
|
|
\'output.file\' => \'svg/pie.svg\', |
|
2166
|
|
|
|
|
|
|
plots => [ |
|
2167
|
|
|
|
|
|
|
{ |
|
2168
|
|
|
|
|
|
|
data => { |
|
2169
|
|
|
|
|
|
|
Russian => 106_000_000, # Primarily European Russia |
|
2170
|
|
|
|
|
|
|
German => 95_000_000, # Germany, Austria, Switzerland, etc. |
|
2171
|
|
|
|
|
|
|
}, |
|
2172
|
|
|
|
|
|
|
\'plot.type\' => \'pie\', |
|
2173
|
|
|
|
|
|
|
title => \'Top Languages in Europe\', |
|
2174
|
|
|
|
|
|
|
suptitle => \'Pie in subplots\', |
|
2175
|
|
|
|
|
|
|
}, |
|
2176
|
|
|
|
|
|
|
{ |
|
2177
|
|
|
|
|
|
|
data => { |
|
2178
|
|
|
|
|
|
|
Russian => 106_000_000, # Primarily European Russia |
|
2179
|
|
|
|
|
|
|
German => 95_000_000, # Germany, Austria, Switzerland, etc. |
|
2180
|
|
|
|
|
|
|
}, |
|
2181
|
|
|
|
|
|
|
\'plot.type\' => \'pie\', |
|
2182
|
|
|
|
|
|
|
title => \'Top Languages in Europe\', |
|
2183
|
|
|
|
|
|
|
}, |
|
2184
|
|
|
|
|
|
|
ncols => 3, |
|
2185
|
|
|
|
|
|
|
});'; |
|
2186
|
69
|
|
|
|
|
114
|
my @undef_args = grep { !defined $args->{$_} } @reqd_args; |
|
|
63
|
|
|
|
|
176
|
|
|
2187
|
69
|
50
|
|
|
|
157
|
if ( scalar @undef_args > 0 ) { |
|
2188
|
0
|
|
|
|
|
0
|
p @undef_args; |
|
2189
|
0
|
|
|
|
|
0
|
die 'the above args are necessary, but were not defined.'; |
|
2190
|
|
|
|
|
|
|
} |
|
2191
|
69
|
50
|
66
|
|
|
186
|
if ( ( not defined $args->{'plot.type'} ) |
|
2192
|
|
|
|
|
|
|
&& ( not defined $args->{plots} ) ) |
|
2193
|
|
|
|
|
|
|
{ |
|
2194
|
0
|
|
|
|
|
0
|
p $args; |
|
2195
|
0
|
|
|
|
|
0
|
die 'either "plot.type" or "plots" must be defined, but neither were'; |
|
2196
|
|
|
|
|
|
|
} |
|
2197
|
69
|
50
|
|
|
|
154
|
if (ref $args->{'output.file'} ne '') { |
|
2198
|
0
|
|
|
|
|
0
|
p $args; |
|
2199
|
0
|
|
|
|
|
0
|
die '"output.file" must be a SCALAR or string, but was given a ' . ref $args->{'output.file'}; |
|
2200
|
|
|
|
|
|
|
} |
|
2201
|
69
|
|
|
|
|
4307
|
my @defined_args = (@reqd_args, @ax_methods, @fig_methods, @plt_methods, @arg, @all_opt); |
|
2202
|
|
|
|
|
|
|
my @bad_args = grep { |
|
2203
|
337
|
|
|
|
|
388
|
my $key = $_; |
|
2204
|
337
|
|
|
|
|
1087
|
not grep { $_ eq $key } @defined_args |
|
|
196778
|
|
|
|
|
207261
|
|
|
2205
|
69
|
|
|
|
|
124
|
} keys %{$args}; |
|
|
69
|
|
|
|
|
217
|
|
|
2206
|
69
|
50
|
|
|
|
206
|
if ( scalar @bad_args > 0 ) { |
|
2207
|
0
|
|
|
|
|
0
|
p @defined_args, array_max => scalar @defined_args; |
|
2208
|
0
|
|
|
|
|
0
|
p @bad_args, array_max => scalar @bad_args; |
|
2209
|
0
|
|
|
|
|
0
|
say STDERR 'the 2nd group of arguments are not recognized, while the 1st is the defined list'; |
|
2210
|
0
|
|
|
|
|
0
|
die "The above args are accepted by \"$current_sub\""; |
|
2211
|
|
|
|
|
|
|
} |
|
2212
|
69
|
50
|
|
|
|
211
|
$args->{nrows} = $args->{nrow} if defined $args->{nrow}; # allow synonyms |
|
2213
|
69
|
50
|
|
|
|
121
|
$args->{ncols} = $args->{ncol} if defined $args->{ncol}; # allow synonyms |
|
2214
|
69
|
|
100
|
|
|
312
|
$args->{nrows} = $args->{nrows} // 1; |
|
2215
|
69
|
|
100
|
|
|
192
|
$args->{ncols} = $args->{ncols} // 1; |
|
2216
|
69
|
|
|
|
|
82
|
my $single_plot = 0; # false |
|
2217
|
69
|
100
|
100
|
|
|
234
|
if ( ( defined $args->{'plot.type'} ) && ( defined $args->{data} ) ) { |
|
2218
|
58
|
|
|
|
|
81
|
$single_plot = 1; # true |
|
2219
|
|
|
|
|
|
|
} |
|
2220
|
69
|
50
|
66
|
|
|
213
|
if (($single_plot == 1) && (not defined $args->{'plot.type'})) { |
|
2221
|
0
|
|
|
|
|
0
|
p $args; |
|
2222
|
0
|
|
|
|
|
0
|
say $single_example; |
|
2223
|
0
|
|
|
|
|
0
|
die "\"plot.type\" was not defined for a single plot in $current_sub"; |
|
2224
|
|
|
|
|
|
|
} |
|
2225
|
69
|
100
|
100
|
|
|
171
|
if ( ( $single_plot == 0 ) && (not defined $args->{plots} )) { |
|
2226
|
1
|
|
|
|
|
20
|
say $multi_example; |
|
2227
|
1
|
|
|
|
|
23
|
die "$current_sub: single plots need \"data\" and \"plot.type\", see example above"; |
|
2228
|
|
|
|
|
|
|
} |
|
2229
|
68
|
50
|
66
|
|
|
173
|
if ( ( $single_plot == 0 ) && ( ref $args->{plots} ne 'ARRAY' ) ) { |
|
2230
|
0
|
|
|
|
|
0
|
p $args; |
|
2231
|
0
|
|
|
|
|
0
|
die "$current_sub \"plots\" must have an array entered into it"; |
|
2232
|
|
|
|
|
|
|
} |
|
2233
|
68
|
50
|
66
|
|
|
138
|
if ( ( $single_plot == 0 ) && ( scalar @{ $args->{plots} } == 0 ) ) { |
|
|
10
|
|
|
|
|
31
|
|
|
2234
|
0
|
|
|
|
|
0
|
p $args; |
|
2235
|
0
|
|
|
|
|
0
|
die "$current_sub \"plots\" has 0 plots entered."; |
|
2236
|
|
|
|
|
|
|
} |
|
2237
|
68
|
100
|
|
|
|
109
|
if ($single_plot == 1) { |
|
2238
|
58
|
50
|
|
|
|
103
|
foreach my $arg (grep {defined $args->{$_} && $args->{$_} > 1} ('ncols', 'nrows')) { |
|
|
116
|
|
|
|
|
361
|
|
|
2239
|
0
|
|
|
|
|
0
|
warn "\"$arg\" is set to >1, but there is only 1 plot: resetting $arg to 1."; |
|
2240
|
0
|
|
|
|
|
0
|
$args->{$arg} = 1; |
|
2241
|
|
|
|
|
|
|
} |
|
2242
|
|
|
|
|
|
|
} |
|
2243
|
68
|
50
|
66
|
|
|
172
|
if ( ( $single_plot == 0 ) |
|
2244
|
10
|
|
|
|
|
27
|
&& ( ( $args->{nrows} * $args->{ncols} ) < scalar @{ $args->{plots} } ) |
|
2245
|
|
|
|
|
|
|
) |
|
2246
|
|
|
|
|
|
|
{ |
|
2247
|
0
|
|
|
|
|
0
|
p $args; |
|
2248
|
0
|
|
|
|
|
0
|
my $n_plots = scalar @{ $args->{plots} }; |
|
|
0
|
|
|
|
|
0
|
|
|
2249
|
0
|
|
|
|
|
0
|
say |
|
2250
|
|
|
|
|
|
|
"ncols = $args->{ncols}; nrows = $args->{nrows}, but there are $n_plots plots.\n"; |
|
2251
|
0
|
|
|
|
|
0
|
die 'There are not enough subplots for the data'; |
|
2252
|
|
|
|
|
|
|
} |
|
2253
|
68
|
100
|
|
|
|
151
|
if ($single_plot == 0) { # multiple plots |
|
2254
|
10
|
|
|
|
|
31
|
my $max_i = scalar @{ $args->{plots} } - 1; |
|
|
10
|
|
|
|
|
34
|
|
|
2255
|
10
|
|
|
|
|
27
|
my @hash_ref_i = grep { ref $args->{plots}[$_]{data} eq 'HASH' } 0..$max_i; |
|
|
22
|
|
|
|
|
50
|
|
|
2256
|
10
|
|
|
|
|
21
|
@bad_args = grep { scalar keys %{ $args->{plots}[$_]{data} } == 0} @hash_ref_i; |
|
|
22
|
|
|
|
|
20
|
|
|
|
22
|
|
|
|
|
53
|
|
|
2257
|
10
|
50
|
|
|
|
20
|
if (scalar @bad_args > 0) { |
|
2258
|
0
|
|
|
|
|
0
|
foreach my $i (@bad_args) { |
|
2259
|
0
|
|
|
|
|
0
|
say STDERR "plot index $i:"; |
|
2260
|
0
|
|
|
|
|
0
|
p $args->{plots}[$i]; |
|
2261
|
|
|
|
|
|
|
} |
|
2262
|
0
|
|
|
|
|
0
|
die "the above hash ref indices have empty data hashes for $current_sub"; |
|
2263
|
|
|
|
|
|
|
} |
|
2264
|
10
|
|
|
|
|
16
|
my @output_file = grep {defined $args->{plots}[$_]{'output.file'}} 0..$max_i; |
|
|
22
|
|
|
|
|
52
|
|
|
2265
|
10
|
50
|
|
|
|
24
|
if (scalar @output_file > 0) { |
|
2266
|
0
|
|
|
|
|
0
|
p $args; |
|
2267
|
0
|
|
|
|
|
0
|
p @output_file; |
|
2268
|
0
|
|
|
|
|
0
|
die '"output.file" was defined at subplots indices above, which does not make sense'; |
|
2269
|
|
|
|
|
|
|
} |
|
2270
|
|
|
|
|
|
|
} |
|
2271
|
68
|
50
|
100
|
|
|
244
|
if (($single_plot == 1) && (ref $args->{data} eq 'HASH') && (scalar keys %{ $args->{data}} == 0 )) { |
|
|
42
|
|
66
|
|
|
131
|
|
|
2272
|
0
|
|
|
|
|
0
|
p $args; |
|
2273
|
0
|
|
|
|
|
0
|
die '"data" is an empty hash'; |
|
2274
|
|
|
|
|
|
|
} |
|
2275
|
68
|
100
|
|
|
|
97
|
@bad_args = grep {defined $args->{$_} && (not looks_like_number($args->{$_}))} ('cbpad', 'ncols', 'nrows', 'scale', 'scalex', 'scaley'); |
|
|
408
|
|
|
|
|
898
|
|
|
2276
|
68
|
50
|
|
|
|
125
|
if (scalar @bad_args > 0) { |
|
2277
|
0
|
|
|
|
|
0
|
p $args; |
|
2278
|
0
|
|
|
|
|
0
|
p @bad_args; |
|
2279
|
0
|
|
|
|
|
0
|
die 'the above args must be numeric'; |
|
2280
|
|
|
|
|
|
|
} |
|
2281
|
68
|
|
|
|
|
192
|
my @ax = map { "ax$_" } 0 .. $args->{nrows} * $args->{ncols} - 1; |
|
|
87
|
|
|
|
|
283
|
|
|
2282
|
68
|
|
|
|
|
125
|
my ( @py, @y, $fh); |
|
2283
|
68
|
|
|
|
|
79
|
my $i = 0; |
|
2284
|
68
|
|
|
|
|
109
|
foreach my $ax (@ax) { |
|
2285
|
87
|
|
|
|
|
184
|
my $a1i = int $i / $args->{ncols}; # 1st index |
|
2286
|
87
|
|
|
|
|
117
|
my $a2i = $i % $args->{ncols}; # 2nd index |
|
2287
|
87
|
|
|
|
|
201
|
$y[$a1i][$a2i] = $ax; |
|
2288
|
87
|
|
|
|
|
145
|
$i++; |
|
2289
|
|
|
|
|
|
|
} |
|
2290
|
68
|
|
|
|
|
83
|
foreach my $y (@y) { |
|
2291
|
74
|
|
|
|
|
84
|
push @py, '(' . join( ',', @{$y} ) . ')'; |
|
|
74
|
|
|
|
|
230
|
|
|
2292
|
|
|
|
|
|
|
} |
|
2293
|
68
|
50
|
66
|
|
|
148
|
if ((defined $args->{'shared.colorbar'}) && ($single_plot == 1)) { |
|
2294
|
0
|
|
|
|
|
0
|
warn 'There is only 1 plot/subplot, shared colorbars make no sense... deleting'; |
|
2295
|
0
|
|
|
|
|
0
|
delete $args->{'shared.colorbar'}; |
|
2296
|
|
|
|
|
|
|
} |
|
2297
|
68
|
100
|
|
|
|
138
|
if (defined $args->{'shared.colorbar'}) { |
|
2298
|
1
|
|
|
|
|
5
|
my $ref = ref $args->{'shared.colorbar'}; |
|
2299
|
1
|
50
|
|
|
|
6
|
if ($ref ne 'ARRAY') { |
|
2300
|
0
|
|
|
|
|
0
|
p $args; |
|
2301
|
0
|
|
|
|
|
0
|
die '"shared.colobar" must be an array reference'; |
|
2302
|
|
|
|
|
|
|
} |
|
2303
|
1
|
|
|
|
|
2
|
my $max_subplot_idx = max(@{ $args->{'shared.colorbar'} }); |
|
|
1
|
|
|
|
|
5
|
|
|
2304
|
1
|
50
|
|
|
|
6
|
if ($max_subplot_idx > ($args->{nrows} * $args->{ncols} - 1)) { |
|
2305
|
0
|
|
|
|
|
0
|
p $args; |
|
2306
|
0
|
|
|
|
|
0
|
die "the max \"shared.colorbar\" index $max_subplot_idx > than the max index of plots"; |
|
2307
|
|
|
|
|
|
|
} |
|
2308
|
|
|
|
|
|
|
} |
|
2309
|
68
|
100
|
|
|
|
132
|
if (defined $args->{add}) { |
|
2310
|
1
|
|
|
|
|
3
|
my $ref = ref $args->{add}; |
|
2311
|
1
|
50
|
|
|
|
3
|
if ($ref ne 'ARRAY') { |
|
2312
|
0
|
|
|
|
|
0
|
die "\"add\" must be an array (of anonymous hashes), but you entered a $ref reference"; |
|
2313
|
|
|
|
|
|
|
} |
|
2314
|
|
|
|
|
|
|
} |
|
2315
|
68
|
50
|
|
|
|
127
|
if ( defined $args->{fh} ) { |
|
2316
|
0
|
|
|
|
|
0
|
my $ref = ref $args->{fh}; |
|
2317
|
0
|
0
|
|
|
|
0
|
if ($ref ne 'File::Temp') { |
|
2318
|
0
|
|
|
|
|
0
|
p $args; |
|
2319
|
0
|
|
|
|
|
0
|
die "$current_sub received a \"$ref\" for \"fh\", which isn't a \"File::Temp\" object."; |
|
2320
|
|
|
|
|
|
|
} |
|
2321
|
0
|
|
|
|
|
0
|
$fh = $args->{fh};# open $fh, '>>', $args->{fh}; |
|
2322
|
|
|
|
|
|
|
} else { |
|
2323
|
68
|
|
|
|
|
401
|
$fh = File::Temp->new(DIR => '/tmp', SUFFIX => '.py', UNLINK => 0); |
|
2324
|
|
|
|
|
|
|
} |
|
2325
|
|
|
|
|
|
|
# Non-ASCII key names (e.g. Greek letters like ρ, τ) arrive as wide |
|
2326
|
|
|
|
|
|
|
# characters when the caller has "use utf8", so give the output filehandle |
|
2327
|
|
|
|
|
|
|
# a UTF-8 encoding layer. Without it, "say $fh" dies with |
|
2328
|
|
|
|
|
|
|
# "Wide character in say" under this module's "warnings FATAL => 'all'". |
|
2329
|
|
|
|
|
|
|
# Only add the layer if it isn't already present, to avoid double-encoding |
|
2330
|
|
|
|
|
|
|
# a filehandle that was passed in. |
|
2331
|
68
|
50
|
|
|
|
31133
|
unless ( grep { /utf-?8/i } PerlIO::get_layers($fh) ) { |
|
|
136
|
|
|
|
|
439
|
|
|
2332
|
68
|
|
|
2
|
|
884
|
binmode $fh, ':encoding(UTF-8)'; |
|
|
2
|
|
|
|
|
60
|
|
|
|
2
|
|
|
|
|
4
|
|
|
|
2
|
|
|
|
|
21
|
|
|
2333
|
|
|
|
|
|
|
} |
|
2334
|
68
|
|
|
|
|
6424
|
say 'temp file is ' . $fh->filename; |
|
2335
|
68
|
|
|
|
|
2246
|
say $fh 'import matplotlib.pyplot as plt'; |
|
2336
|
68
|
|
|
|
|
202
|
say $fh 'import json, base64'; |
|
2337
|
68
|
100
|
|
|
|
249
|
if ( $single_plot == 0 ) { |
|
|
|
50
|
|
|
|
|
|
|
2338
|
10
|
|
100
|
|
|
74
|
$args->{sharex} = $args->{sharex} // 0; |
|
2339
|
10
|
|
100
|
|
|
47
|
$args->{sharey} = $args->{sharey} // 0; |
|
2340
|
10
|
|
|
|
|
78
|
say $fh 'fig, (' |
|
2341
|
|
|
|
|
|
|
. join( ',', @py ) |
|
2342
|
|
|
|
|
|
|
. ") = plt.subplots($args->{nrows}, $args->{ncols}, sharex = $args->{sharex}, sharey = $args->{sharey}, layout = 'constrained') #" . __LINE__; |
|
2343
|
|
|
|
|
|
|
} elsif ( $single_plot == 1 ) { |
|
2344
|
58
|
|
|
|
|
108
|
say $fh 'fig, ax0 = plt.subplots(1,1, layout = "constrained")'; |
|
2345
|
|
|
|
|
|
|
} else { |
|
2346
|
0
|
|
|
|
|
0
|
die "\$single_plot = $single_plot breaks pigeonholes"; |
|
2347
|
|
|
|
|
|
|
} |
|
2348
|
68
|
100
|
|
|
|
213
|
if ( defined $args->{plots} ) { |
|
2349
|
10
|
|
|
|
|
17
|
my @undef_plot_types; |
|
2350
|
10
|
|
|
|
|
19
|
my $j = 0; |
|
2351
|
10
|
|
|
|
|
14
|
foreach my $plot (@{ $args->{plots} }) { |
|
|
10
|
|
|
|
|
32
|
|
|
2352
|
22
|
50
|
|
|
|
56
|
next if defined $plot->{'plot.type'}; |
|
2353
|
0
|
|
|
|
|
0
|
push @undef_plot_types, $j; |
|
2354
|
0
|
|
|
|
|
0
|
$j++; |
|
2355
|
|
|
|
|
|
|
} |
|
2356
|
10
|
50
|
|
|
|
34
|
if ( scalar @undef_plot_types > 0 ) { |
|
2357
|
0
|
|
|
|
|
0
|
p $args; |
|
2358
|
0
|
|
|
|
|
0
|
p @undef_plot_types; |
|
2359
|
0
|
|
|
|
|
0
|
die 'The above subplot indices are missing "plot.type"'; |
|
2360
|
|
|
|
|
|
|
} |
|
2361
|
|
|
|
|
|
|
} |
|
2362
|
68
|
|
|
|
|
902
|
my %dispatch = ( |
|
2363
|
|
|
|
|
|
|
bar => \&barplot_helper, barh => \&barplot_helper, |
|
2364
|
|
|
|
|
|
|
boxplot => \&boxplot_helper, colored_table=> \&colored_table_helper, |
|
2365
|
|
|
|
|
|
|
hexbin => \&hexbin_helper, hist => \&hist_helper, |
|
2366
|
|
|
|
|
|
|
hist2d => \&hist2d_helper, imshow => \&imshow_helper, |
|
2367
|
|
|
|
|
|
|
pie => \&pie_helper, plot => \&plot_helper, |
|
2368
|
|
|
|
|
|
|
scatter => \&scatter_helper, violin => \&violin_helper, |
|
2369
|
|
|
|
|
|
|
violinplot => \&violin_helper, |
|
2370
|
|
|
|
|
|
|
wide => \&wide_helper |
|
2371
|
|
|
|
|
|
|
); |
|
2372
|
68
|
100
|
|
|
|
203
|
if ($single_plot == 1) { |
|
2373
|
58
|
|
|
|
|
80
|
foreach my $graph (@{ $args->{add} }) { |
|
|
58
|
|
|
|
|
252
|
|
|
2374
|
1
|
|
33
|
|
|
7
|
$graph->{'plot.type'} = $graph->{'plot.type'} // $args->{'plot.type'}; |
|
2375
|
1
|
|
|
|
|
3
|
my $type = $graph->{'plot.type'}; |
|
2376
|
1
|
50
|
|
|
|
4
|
die 'plot.type not defined for "add" graph' unless defined $type; |
|
2377
|
1
|
50
|
|
|
|
4
|
die "\"$type\" isn't a known plot.type" unless defined $dispatch{$type}; |
|
2378
|
1
|
|
|
|
|
8
|
$dispatch{$type}->({ |
|
2379
|
|
|
|
|
|
|
fh => $fh, |
|
2380
|
|
|
|
|
|
|
ax => 0, |
|
2381
|
|
|
|
|
|
|
plot => $graph |
|
2382
|
|
|
|
|
|
|
}); |
|
2383
|
|
|
|
|
|
|
} |
|
2384
|
58
|
|
|
|
|
124
|
delete $args->{add}; |
|
2385
|
58
|
|
|
|
|
113
|
my $type = $args->{'plot.type'}; |
|
2386
|
58
|
100
|
|
|
|
159
|
unless (defined $dispatch{$type}) { |
|
2387
|
1
|
|
|
|
|
26
|
p $args; |
|
2388
|
1
|
|
|
|
|
11448
|
die "$type isn't defined"; |
|
2389
|
|
|
|
|
|
|
} |
|
2390
|
57
|
|
|
|
|
388
|
$dispatch{$type}->({ |
|
2391
|
|
|
|
|
|
|
fh => $fh, |
|
2392
|
|
|
|
|
|
|
ax => 0, |
|
2393
|
|
|
|
|
|
|
plot => $args |
|
2394
|
|
|
|
|
|
|
}); |
|
2395
|
55
|
|
|
|
|
334
|
my %rename = ( |
|
2396
|
|
|
|
|
|
|
xlabel => 'set_xlabel', |
|
2397
|
|
|
|
|
|
|
title => 'set_title', |
|
2398
|
|
|
|
|
|
|
ylabel => 'set_ylabel', |
|
2399
|
|
|
|
|
|
|
legend => 'legend', |
|
2400
|
|
|
|
|
|
|
xlim => 'set_xlim', |
|
2401
|
|
|
|
|
|
|
); |
|
2402
|
55
|
|
|
|
|
69
|
foreach my $opt ( grep { defined $rename{$_} } keys %{$args} ) { |
|
|
603
|
|
|
|
|
742
|
|
|
|
55
|
|
|
|
|
174
|
|
|
2403
|
31
|
|
|
|
|
74
|
$args->{ $rename{$opt} } = delete $args->{$opt}; |
|
2404
|
|
|
|
|
|
|
} |
|
2405
|
|
|
|
|
|
|
plot_args({ |
|
2406
|
55
|
|
|
|
|
247
|
fh => $fh, |
|
2407
|
|
|
|
|
|
|
args => $args, |
|
2408
|
|
|
|
|
|
|
ax => 'ax0' |
|
2409
|
|
|
|
|
|
|
}); |
|
2410
|
|
|
|
|
|
|
} |
|
2411
|
65
|
|
|
|
|
168
|
my $ax = 0; |
|
2412
|
65
|
|
|
|
|
73
|
foreach my $plot (@{ $args->{plots} } ) { |
|
|
65
|
|
|
|
|
172
|
|
|
2413
|
22
|
100
|
66
|
|
|
66
|
if ( |
|
2414
|
|
|
|
|
|
|
(defined $args->{'shared.colorbar'}) && # shared.colorbar is defined |
|
2415
|
4
|
|
|
|
|
13
|
(grep {$_ == $ax} @{ $args->{'shared.colorbar'} }) # subplot's colorbar is shared w other plots |
|
|
2
|
|
|
|
|
7
|
|
|
2416
|
|
|
|
|
|
|
) { |
|
2417
|
2
|
100
|
|
|
|
4
|
if ($ax == max( @{ $args->{'shared.colorbar'} } )) { # this is the max |
|
|
2
|
|
|
|
|
10
|
|
|
2418
|
1
|
|
|
|
|
2
|
$plot->{'colorbar.on'} = 1; # turn on if this is the max plot |
|
2419
|
1
|
|
|
|
|
3
|
$plot->{'shared.colorbar'} = $args->{'shared.colorbar'}; |
|
2420
|
1
|
|
|
|
|
4
|
$plot->{cbpad} = $args->{cbpad}; |
|
2421
|
|
|
|
|
|
|
} else { |
|
2422
|
1
|
|
|
|
|
4
|
$plot->{'colorbar.on'} = 0; # turn off, its colorbar will be shared later |
|
2423
|
|
|
|
|
|
|
} |
|
2424
|
|
|
|
|
|
|
} |
|
2425
|
22
|
100
|
|
|
|
42
|
if (defined $plot->{add}) { |
|
2426
|
2
|
|
|
|
|
5
|
my $ref = ref $plot->{add}; |
|
2427
|
2
|
50
|
|
|
|
7
|
if ($ref ne 'ARRAY') { |
|
2428
|
0
|
|
|
|
|
0
|
die "\"add\" must be an array (of anonymous hashes), but you entered a $ref reference at ax = $ax"; |
|
2429
|
|
|
|
|
|
|
} |
|
2430
|
|
|
|
|
|
|
} |
|
2431
|
22
|
|
|
|
|
28
|
foreach my $graph (@{ $plot->{add} }) { |
|
|
22
|
|
|
|
|
55
|
|
|
2432
|
2
|
|
33
|
|
|
8
|
$graph->{'plot.type'} = $graph->{'plot.type'} // $plot->{'plot.type'}; |
|
2433
|
2
|
|
|
|
|
5
|
my $type = $graph->{'plot.type'}; |
|
2434
|
2
|
50
|
|
|
|
6
|
die "plot.type not defined for \"add\" graph at ax = $ax" unless defined $type; |
|
2435
|
2
|
50
|
|
|
|
6
|
die "\"$type\" isn't a known plot.type at ax = $ax" unless defined $dispatch{$type}; |
|
2436
|
2
|
|
|
|
|
8
|
$dispatch{$type}->({ |
|
2437
|
|
|
|
|
|
|
fh => $fh, |
|
2438
|
|
|
|
|
|
|
ax => $ax, |
|
2439
|
|
|
|
|
|
|
plot => $graph |
|
2440
|
|
|
|
|
|
|
}); |
|
2441
|
|
|
|
|
|
|
} |
|
2442
|
22
|
|
|
|
|
52
|
my @reqd_keys = ( |
|
2443
|
|
|
|
|
|
|
'data', # data type, of which several are available |
|
2444
|
|
|
|
|
|
|
'plot.type', # "bar", "barh", "hist", etc. |
|
2445
|
|
|
|
|
|
|
); |
|
2446
|
22
|
|
|
|
|
39
|
my @undef_keys = grep { !defined $plot->{$_} } @reqd_keys; |
|
|
44
|
|
|
|
|
106
|
|
|
2447
|
22
|
50
|
|
|
|
39
|
if ( scalar @undef_keys > 0 ) { |
|
2448
|
0
|
|
|
|
|
0
|
p $plot; |
|
2449
|
0
|
|
|
|
|
0
|
p @undef_keys; |
|
2450
|
0
|
|
|
|
|
0
|
die "Above args are necessary, but were not defined for plot $ax."; |
|
2451
|
|
|
|
|
|
|
} |
|
2452
|
22
|
|
|
|
|
108
|
$dispatch{$plot->{'plot.type'}}->({ |
|
2453
|
|
|
|
|
|
|
fh => $fh, |
|
2454
|
|
|
|
|
|
|
ax => $ax, |
|
2455
|
|
|
|
|
|
|
plot => $plot |
|
2456
|
|
|
|
|
|
|
}); |
|
2457
|
22
|
|
|
|
|
103
|
my %rename = ( |
|
2458
|
|
|
|
|
|
|
xlabel => 'set_xlabel', title => 'set_title', |
|
2459
|
|
|
|
|
|
|
ylabel => 'set_ylabel', legend => 'legend', |
|
2460
|
|
|
|
|
|
|
# xlim => 'set_xlim', |
|
2461
|
|
|
|
|
|
|
); |
|
2462
|
22
|
|
|
|
|
27
|
foreach my $opt ( grep { defined $rename{$_} } keys %{$plot} ) { |
|
|
159
|
|
|
|
|
187
|
|
|
|
22
|
|
|
|
|
46
|
|
|
2463
|
8
|
|
|
|
|
23
|
$plot->{ $rename{$opt} } = delete $plot->{$opt}; |
|
2464
|
|
|
|
|
|
|
} |
|
2465
|
|
|
|
|
|
|
plot_args({ |
|
2466
|
22
|
|
|
|
|
108
|
fh => $fh, |
|
2467
|
|
|
|
|
|
|
args => $plot, |
|
2468
|
|
|
|
|
|
|
ax => "ax$ax" |
|
2469
|
|
|
|
|
|
|
}); |
|
2470
|
22
|
|
|
|
|
90
|
$ax++; |
|
2471
|
|
|
|
|
|
|
} |
|
2472
|
65
|
|
|
|
|
138
|
foreach my $ax (@ax) { |
|
2473
|
84
|
|
|
|
|
150
|
say $fh "if $ax.has_data() == False:"; # remove empty plots |
|
2474
|
84
|
|
|
|
|
213
|
say $fh "\t$ax.remove()"; # remove empty plots |
|
2475
|
|
|
|
|
|
|
} |
|
2476
|
65
|
|
|
|
|
139
|
my %methods = map { $_ => 1 } @plt_methods; |
|
|
14625
|
|
|
|
|
24598
|
|
|
2477
|
65
|
|
|
|
|
531
|
foreach my $plt_method ( grep { defined $methods{$_} } keys %{$args} ) { |
|
|
730
|
|
|
|
|
883
|
|
|
|
65
|
|
|
|
|
236
|
|
|
2478
|
7
|
|
|
|
|
11
|
my $ref = ref $args->{$plt_method}; |
|
2479
|
7
|
50
|
|
|
|
17
|
if ( $ref eq '' ) { |
|
|
|
0
|
|
|
|
|
|
|
2480
|
7
|
|
|
|
|
18
|
my $type = print_type($args->{$plt_method}); |
|
2481
|
7
|
100
|
|
|
|
15
|
if ($plt_method eq 'show') { |
|
|
|
50
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
2482
|
6
|
|
|
|
|
11
|
next; # plt.show() is emitted after plt.savefig() below |
|
2483
|
|
|
|
|
|
|
} elsif ($type eq 'single quotes') { |
|
2484
|
1
|
|
|
|
|
5
|
say $fh "plt.$plt_method('$args->{$plt_method}')#" . __LINE__; |
|
2485
|
|
|
|
|
|
|
} elsif ($type eq 'no quotes') { |
|
2486
|
0
|
|
|
|
|
0
|
say $fh "plt.$plt_method($args->{$plt_method})#" . __LINE__; |
|
2487
|
|
|
|
|
|
|
} |
|
2488
|
|
|
|
|
|
|
} elsif ( $ref eq 'ARRAY' ) { |
|
2489
|
0
|
|
|
|
|
0
|
foreach my $j ( @{ $args->{$plt_method} } ) { |
|
|
0
|
|
|
|
|
0
|
|
|
2490
|
0
|
|
|
|
|
0
|
my $type = print_type($j); |
|
2491
|
0
|
0
|
|
|
|
0
|
if ($type eq 'single quotes') { |
|
|
|
0
|
|
|
|
|
|
|
2492
|
0
|
|
|
|
|
0
|
say $fh "plt.$plt_method('$j')#" . __LINE__; |
|
2493
|
|
|
|
|
|
|
} elsif ($type eq 'no quotes') { |
|
2494
|
0
|
|
|
|
|
0
|
say $fh "plt.$plt_method($j)#" . __LINE__; |
|
2495
|
|
|
|
|
|
|
} |
|
2496
|
|
|
|
|
|
|
} |
|
2497
|
|
|
|
|
|
|
} else { |
|
2498
|
0
|
|
|
|
|
0
|
p $args; |
|
2499
|
0
|
|
|
|
|
0
|
die "$plt_method = \"$ref\" only accepts scalar or array types"; |
|
2500
|
|
|
|
|
|
|
} |
|
2501
|
|
|
|
|
|
|
} |
|
2502
|
65
|
|
|
|
|
145
|
%methods = map { $_ => 1 } @fig_methods; |
|
|
6240
|
|
|
|
|
9216
|
|
|
2503
|
65
|
|
|
|
|
289
|
foreach my $fig_method ( grep { defined $methods{$_} } keys %{$args} ) { |
|
|
730
|
|
|
|
|
856
|
|
|
|
65
|
|
|
|
|
175
|
|
|
2504
|
0
|
|
|
|
|
0
|
my $ref = ref $args->{$fig_method}; |
|
2505
|
0
|
0
|
|
|
|
0
|
if ( $ref eq '' ) { |
|
|
|
0
|
|
|
|
|
|
|
2506
|
0
|
|
|
|
|
0
|
say $fh "fig.$fig_method($args->{$fig_method})#" . __LINE__; |
|
2507
|
|
|
|
|
|
|
} elsif ( $ref eq 'ARRAY' ) { |
|
2508
|
0
|
|
|
|
|
0
|
foreach my $j ( @{ $args->{$fig_method} } ) { # say $fh "plt.$method($plt)"; |
|
|
0
|
|
|
|
|
0
|
|
|
2509
|
0
|
|
|
|
|
0
|
say $fh "fig.$fig_method($j)"; |
|
2510
|
|
|
|
|
|
|
} |
|
2511
|
|
|
|
|
|
|
} else { |
|
2512
|
0
|
|
|
|
|
0
|
p $args; |
|
2513
|
0
|
|
|
|
|
0
|
die "$fig_method = \"$ref\" only accepts scalar or array types"; |
|
2514
|
|
|
|
|
|
|
} |
|
2515
|
|
|
|
|
|
|
} |
|
2516
|
65
|
100
|
|
|
|
182
|
if (defined $args->{scale}) { |
|
2517
|
1
|
|
|
|
|
6
|
say $fh "fig.set_figheight(plt.rcParams['figure.figsize'][1] * $args->{scale}) #" . __LINE__; |
|
2518
|
1
|
|
|
|
|
4
|
say $fh "fig.set_figwidth(plt.rcParams['figure.figsize'][0] * $args->{scale}) #" . __LINE__; |
|
2519
|
|
|
|
|
|
|
} |
|
2520
|
65
|
100
|
|
|
|
117
|
if (defined $args->{scalex}) { |
|
2521
|
1
|
|
|
|
|
4
|
say $fh "fig.set_figwidth(plt.rcParams['figure.figsize'][0] * $args->{scalex}) #" . __LINE__; |
|
2522
|
|
|
|
|
|
|
} |
|
2523
|
65
|
100
|
|
|
|
109
|
if (defined $args->{scaley}) { |
|
2524
|
1
|
|
|
|
|
3
|
say $fh "fig.set_figheight(plt.rcParams['figure.figsize'][1] * $args->{scaley}) #" . __LINE__; |
|
2525
|
|
|
|
|
|
|
} |
|
2526
|
65
|
100
|
|
|
|
112
|
if (defined $args->{'output.file'}) { |
|
2527
|
|
|
|
|
|
|
write_data({ |
|
2528
|
59
|
|
|
|
|
291
|
data => $args->{'output.file'}, |
|
2529
|
|
|
|
|
|
|
fh => $fh, |
|
2530
|
|
|
|
|
|
|
name => 'output_file' |
|
2531
|
|
|
|
|
|
|
}); |
|
2532
|
59
|
|
|
|
|
1363
|
say $fh "plt.savefig(output_file, bbox_inches = 'tight', metadata={'Creator': 'made/written by " |
|
2533
|
|
|
|
|
|
|
. getcwd() |
|
2534
|
|
|
|
|
|
|
. "/$RealScript called using \"$current_sub\" in " . __FILE__ . " version $VERSION'})"; |
|
2535
|
|
|
|
|
|
|
} |
|
2536
|
65
|
100
|
|
|
|
182
|
say $fh 'plt.show()' if $args->{show}; # after savefig, so the file is written even if the window is never closed |
|
2537
|
65
|
|
50
|
|
|
185
|
$args->{execute} = $args->{execute} // 1; |
|
2538
|
65
|
50
|
|
|
|
188
|
say $fh 'plt.close()' if $args->{execute} == 0; |
|
2539
|
65
|
50
|
|
|
|
126
|
if ( $args->{execute} ) { |
|
2540
|
|
|
|
|
|
|
my ($stdout, $stderr, $exit) = capture { |
|
2541
|
0
|
|
|
0
|
|
0
|
system( 'python3 ' . $fh->filename ) |
|
2542
|
0
|
|
|
|
|
0
|
}; |
|
2543
|
0
|
0
|
|
|
|
0
|
if ($exit != 0) { |
|
2544
|
0
|
|
|
|
|
0
|
say STDERR "STDOUT = $stdout"; |
|
2545
|
0
|
|
|
|
|
0
|
say STDERR "STDERR = $stderr"; |
|
2546
|
0
|
|
|
|
|
0
|
die 'python3 ' . $fh->filename . ' failed'; |
|
2547
|
|
|
|
|
|
|
} |
|
2548
|
|
|
|
|
|
|
say 'wrote ' |
|
2549
|
0
|
0
|
|
|
|
0
|
. colored( ['cyan on_bright_yellow'], "$args->{'output.file'}" ) if defined $args->{'output.file'}; |
|
2550
|
|
|
|
|
|
|
} else { # not running yet |
|
2551
|
|
|
|
|
|
|
say 'will write ' |
|
2552
|
65
|
100
|
|
|
|
374
|
. colored( ['cyan on_bright_yellow'], "$args->{'output.file'}" ) if defined $args->{'output.file'}; |
|
2553
|
|
|
|
|
|
|
} |
|
2554
|
65
|
|
|
|
|
4012
|
return $fh->filename; |
|
2555
|
|
|
|
|
|
|
} |
|
2556
|
|
|
|
|
|
|
# Generate wrappers dynamically |
|
2557
|
|
|
|
|
|
|
my @wrappers = qw(bar barh boxplot colored_table hexbin hist hist2d imshow pie plot scatter violin violinplot wide); |
|
2558
|
|
|
|
|
|
|
|
|
2559
|
|
|
|
|
|
|
foreach my $sub_name (@wrappers) { |
|
2560
|
6
|
|
|
6
|
|
62
|
no strict 'refs'; # Gemini helped |
|
|
6
|
|
|
|
|
10
|
|
|
|
6
|
|
|
|
|
1924
|
|
|
2561
|
|
|
|
|
|
|
*$sub_name = sub { |
|
2562
|
|
|
|
|
|
|
# accept both bar({ ... }) and bar( ... ) |
|
2563
|
14
|
|
|
14
|
|
7406
|
my $args; |
|
2564
|
14
|
50
|
33
|
|
|
88
|
if ( ( scalar @_ == 1 ) && ( ref $_[0] eq 'HASH' ) ) { |
|
|
|
50
|
|
|
|
|
|
|
2565
|
0
|
|
|
|
|
0
|
$args = $_[0]; |
|
2566
|
|
|
|
|
|
|
} elsif ( ( scalar @_ % 2 ) == 0 ) { |
|
2567
|
14
|
|
|
|
|
42
|
$args = { @_ }; |
|
2568
|
|
|
|
|
|
|
} else { |
|
2569
|
0
|
|
|
|
|
0
|
die "$sub_name: odd number of arguments; call as $sub_name( key => value, ... ) or $sub_name({ key => value, ... })"; |
|
2570
|
|
|
|
|
|
|
} |
|
2571
|
|
|
|
|
|
|
# Check for conflicts |
|
2572
|
14
|
50
|
33
|
|
|
39
|
if ((defined $args->{'plot.type'}) && ($args->{'plot.type'} ne $sub_name)) { |
|
2573
|
0
|
|
|
|
|
0
|
warn "$args->{'plot.type'} will be ignored for $sub_name"; |
|
2574
|
|
|
|
|
|
|
} |
|
2575
|
14
|
50
|
|
|
|
25
|
if (defined $args->{plots}) { |
|
2576
|
0
|
|
|
|
|
0
|
die "\"plots\" is meant for the subroutine \"plt\"; $sub_name is single-only"; |
|
2577
|
|
|
|
|
|
|
} |
|
2578
|
14
|
50
|
|
|
|
29
|
if (defined $args->{p}) { |
|
2579
|
0
|
|
|
|
|
0
|
die "\"p\" is meant for the subroutine \"plt\"; $sub_name is single-only"; |
|
2580
|
|
|
|
|
|
|
} |
|
2581
|
|
|
|
|
|
|
# Call plt |
|
2582
|
14
|
|
|
|
|
15
|
plt({ %{ $args }, 'plot.type' => $sub_name }); |
|
|
14
|
|
|
|
|
55
|
|
|
2583
|
|
|
|
|
|
|
}; |
|
2584
|
|
|
|
|
|
|
} |
|
2585
|
|
|
|
|
|
|
1; |
|
2586
|
|
|
|
|
|
|
__END__ |