| line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
|
1
|
|
|
|
|
|
|
package HPC::Runner::Command::archive; |
|
2
|
|
|
|
|
|
|
|
|
3
|
1
|
|
|
1
|
|
3714
|
use MooseX::App::Command; |
|
|
1
|
|
|
|
|
4
|
|
|
|
1
|
|
|
|
|
18
|
|
|
4
|
|
|
|
|
|
|
|
|
5
|
|
|
|
|
|
|
with 'HPC::Runner::Command::Logger::Loggers'; |
|
6
|
|
|
|
|
|
|
|
|
7
|
1
|
|
|
1
|
|
19368
|
use File::Spec; |
|
|
1
|
|
|
|
|
4
|
|
|
|
1
|
|
|
|
|
39
|
|
|
8
|
1
|
|
|
1
|
|
11
|
use Path::Tiny; |
|
|
1
|
|
|
|
|
3
|
|
|
|
1
|
|
|
|
|
96
|
|
|
9
|
1
|
|
|
1
|
|
14
|
use Cwd; |
|
|
1
|
|
|
|
|
4
|
|
|
|
1
|
|
|
|
|
89
|
|
|
10
|
1
|
|
|
1
|
|
10
|
use DateTime; |
|
|
1
|
|
|
|
|
4
|
|
|
|
1
|
|
|
|
|
40
|
|
|
11
|
1
|
|
|
1
|
|
11
|
use Archive::Tar; |
|
|
1
|
|
|
|
|
4
|
|
|
|
1
|
|
|
|
|
85
|
|
|
12
|
1
|
|
|
1
|
|
12
|
use File::Path qw(make_path remove_tree); |
|
|
1
|
|
|
|
|
5
|
|
|
|
1
|
|
|
|
|
83
|
|
|
13
|
1
|
|
|
1
|
|
11
|
use File::Find::Rule; |
|
|
1
|
|
|
|
|
4
|
|
|
|
1
|
|
|
|
|
17
|
|
|
14
|
1
|
|
|
1
|
|
118
|
use IO::Dir; |
|
|
1
|
|
|
|
|
4
|
|
|
|
1
|
|
|
|
|
125
|
|
|
15
|
1
|
|
|
1
|
|
11
|
use IPC::Cmd qw[can_run run]; |
|
|
1
|
|
|
|
|
2
|
|
|
|
1
|
|
|
|
|
90
|
|
|
16
|
|
|
|
|
|
|
|
|
17
|
1
|
|
|
1
|
|
11
|
use MooseX::Types::Path::Tiny qw/Path Paths AbsPath AbsFile/; |
|
|
1
|
|
|
|
|
3
|
|
|
|
1
|
|
|
|
|
21
|
|
|
18
|
|
|
|
|
|
|
|
|
19
|
|
|
|
|
|
|
command_short_description 'Create an archive of results.'; |
|
20
|
|
|
|
|
|
|
command_long_description 'Create an archive of results. ' |
|
21
|
|
|
|
|
|
|
. 'Default is to add all files in your current working directory.' |
|
22
|
|
|
|
|
|
|
. 'Include or exclude with --include_paths and --exclude_paths. ' |
|
23
|
|
|
|
|
|
|
. 'This requires tar to be installed'; |
|
24
|
|
|
|
|
|
|
|
|
25
|
|
|
|
|
|
|
=head2 Command Line Options |
|
26
|
|
|
|
|
|
|
|
|
27
|
|
|
|
|
|
|
=cut |
|
28
|
|
|
|
|
|
|
|
|
29
|
|
|
|
|
|
|
option 'include_paths' => ( |
|
30
|
|
|
|
|
|
|
is => 'rw', |
|
31
|
|
|
|
|
|
|
isa => Paths, |
|
32
|
|
|
|
|
|
|
required => 0, |
|
33
|
|
|
|
|
|
|
coerce => 1, |
|
34
|
|
|
|
|
|
|
documentation => 'Include files or directories', |
|
35
|
|
|
|
|
|
|
cmd_aliases => ['ip'], |
|
36
|
|
|
|
|
|
|
predicate => 'has_include_paths', |
|
37
|
|
|
|
|
|
|
clearer => 'clear_include_paths', |
|
38
|
|
|
|
|
|
|
); |
|
39
|
|
|
|
|
|
|
|
|
40
|
|
|
|
|
|
|
option 'exclude_paths' => ( |
|
41
|
|
|
|
|
|
|
is => 'rw', |
|
42
|
|
|
|
|
|
|
isa => Paths, |
|
43
|
|
|
|
|
|
|
required => 0, |
|
44
|
|
|
|
|
|
|
coerce => 1, |
|
45
|
|
|
|
|
|
|
predicate => 'has_exclude_paths', |
|
46
|
|
|
|
|
|
|
documentation => 'Files or directories to exclude', |
|
47
|
|
|
|
|
|
|
cmd_aliases => ['ep'], |
|
48
|
|
|
|
|
|
|
clearer => 'clear_exclude_paths', |
|
49
|
|
|
|
|
|
|
); |
|
50
|
|
|
|
|
|
|
|
|
51
|
|
|
|
|
|
|
option 'archive' => ( |
|
52
|
|
|
|
|
|
|
is => 'rw', |
|
53
|
|
|
|
|
|
|
isa => Path, |
|
54
|
|
|
|
|
|
|
coerce => 1, |
|
55
|
|
|
|
|
|
|
required => 0, |
|
56
|
|
|
|
|
|
|
default => sub { |
|
57
|
|
|
|
|
|
|
my $self = shift; |
|
58
|
|
|
|
|
|
|
my $dt = DateTime->now( time_zone => 'local' ); |
|
59
|
|
|
|
|
|
|
$dt = "$dt"; |
|
60
|
|
|
|
|
|
|
$dt =~ s/:/-/g; |
|
61
|
|
|
|
|
|
|
|
|
62
|
|
|
|
|
|
|
my $tar_path = File::Spec->catdir( 'archive-' . $dt . '.tar.gz' ); |
|
63
|
|
|
|
|
|
|
|
|
64
|
|
|
|
|
|
|
return path($tar_path); |
|
65
|
|
|
|
|
|
|
}, |
|
66
|
|
|
|
|
|
|
); |
|
67
|
|
|
|
|
|
|
|
|
68
|
|
|
|
|
|
|
sub execute { |
|
69
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
70
|
|
|
|
|
|
|
|
|
71
|
0
|
|
|
|
|
|
my $files = $self->list_dirs; |
|
72
|
0
|
|
|
|
|
|
$files = $self->check_dirs_exist($files); |
|
73
|
|
|
|
|
|
|
|
|
74
|
0
|
|
|
|
|
|
$self->create_archive($files); |
|
75
|
|
|
|
|
|
|
} |
|
76
|
|
|
|
|
|
|
|
|
77
|
|
|
|
|
|
|
sub create_archive { |
|
78
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
79
|
0
|
|
|
|
|
|
my $files = shift; |
|
80
|
|
|
|
|
|
|
|
|
81
|
0
|
|
|
|
|
|
make_path( $self->archive->parent ); |
|
82
|
|
|
|
|
|
|
|
|
83
|
0
|
|
|
|
|
|
my $buffer; |
|
84
|
|
|
|
|
|
|
my $cmd = |
|
85
|
0
|
|
|
|
|
|
"tar -zcvf " . $self->archive->stringify . " " . join( ' ', @{$files} ); |
|
|
0
|
|
|
|
|
|
|
|
86
|
0
|
|
|
|
|
|
$self->screen_log->info( 'Cmd is: ' . $cmd ); |
|
87
|
0
|
0
|
|
|
|
|
if ( |
|
88
|
|
|
|
|
|
|
scalar run( |
|
89
|
|
|
|
|
|
|
command => $cmd, |
|
90
|
|
|
|
|
|
|
verbose => 0, |
|
91
|
|
|
|
|
|
|
buffer => \$buffer, |
|
92
|
|
|
|
|
|
|
timeout => 20 |
|
93
|
|
|
|
|
|
|
) |
|
94
|
|
|
|
|
|
|
) |
|
95
|
|
|
|
|
|
|
{ |
|
96
|
0
|
|
|
|
|
|
$self->screen_log->info( |
|
97
|
|
|
|
|
|
|
'Archive ' . $self->archive->stringify . ' created successfully' ); |
|
98
|
|
|
|
|
|
|
} |
|
99
|
|
|
|
|
|
|
else { |
|
100
|
0
|
|
|
|
|
|
$self->screen_log->info( 'Archive could not be created! ' . $buffer ); |
|
101
|
|
|
|
|
|
|
} |
|
102
|
|
|
|
|
|
|
|
|
103
|
0
|
|
|
|
|
|
my $tar = Archive::Tar->new; |
|
104
|
0
|
|
|
|
|
|
$tar->read( $self->archive ); |
|
105
|
|
|
|
|
|
|
|
|
106
|
0
|
|
|
|
|
|
return $tar; |
|
107
|
|
|
|
|
|
|
} |
|
108
|
|
|
|
|
|
|
|
|
109
|
|
|
|
|
|
|
sub check_dirs_exist { |
|
110
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
111
|
0
|
|
|
|
|
|
my $files = shift; |
|
112
|
|
|
|
|
|
|
|
|
113
|
0
|
|
|
|
|
|
my @exists = (); |
|
114
|
|
|
|
|
|
|
|
|
115
|
0
|
|
|
|
|
|
foreach my $file ( @{$files} ) { |
|
|
0
|
|
|
|
|
|
|
|
116
|
0
|
0
|
|
|
|
|
if ( $file->exists ) { |
|
117
|
0
|
|
|
|
|
|
push( @exists, $file ); |
|
118
|
|
|
|
|
|
|
} |
|
119
|
|
|
|
|
|
|
else { |
|
120
|
0
|
|
|
|
|
|
$self->screen_log->warn( |
|
121
|
|
|
|
|
|
|
'Path ' . $file->stringify . ' does not exist. Excluding.' ); |
|
122
|
|
|
|
|
|
|
} |
|
123
|
|
|
|
|
|
|
} |
|
124
|
|
|
|
|
|
|
|
|
125
|
0
|
0
|
|
|
|
|
if ( !scalar @exists ) { |
|
126
|
0
|
|
|
|
|
|
$self->screen_log->fatal('There are no paths to archive. Exiting.'); |
|
127
|
0
|
|
|
|
|
|
exit 1; |
|
128
|
|
|
|
|
|
|
} |
|
129
|
|
|
|
|
|
|
|
|
130
|
0
|
|
|
|
|
|
return \@exists; |
|
131
|
|
|
|
|
|
|
} |
|
132
|
|
|
|
|
|
|
|
|
133
|
|
|
|
|
|
|
sub list_dirs { |
|
134
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
135
|
|
|
|
|
|
|
|
|
136
|
0
|
|
|
|
|
|
my @dirs = |
|
137
|
|
|
|
|
|
|
File::Find::Rule->extras( { follow => 1 } )->maxdepth(1)->directory() |
|
138
|
|
|
|
|
|
|
->in(getcwd); |
|
139
|
|
|
|
|
|
|
|
|
140
|
0
|
|
|
|
|
|
my @files = |
|
141
|
|
|
|
|
|
|
File::Find::Rule->extras( { follow => 1 } )->maxdepth(1)->file() |
|
142
|
|
|
|
|
|
|
->in(getcwd); |
|
143
|
|
|
|
|
|
|
|
|
144
|
|
|
|
|
|
|
# my @files = glob( File::Spec->catdir( getcwd(), "*" ) ); |
|
145
|
0
|
|
|
|
|
|
my $cwd_files = {}; |
|
146
|
|
|
|
|
|
|
|
|
147
|
0
|
|
|
|
|
|
map { $cwd_files->{$_} = 1 } @files; |
|
|
0
|
|
|
|
|
|
|
|
148
|
0
|
|
|
|
|
|
map { $cwd_files->{$_} = 1 } @dirs; |
|
|
0
|
|
|
|
|
|
|
|
149
|
|
|
|
|
|
|
|
|
150
|
0
|
0
|
|
|
|
|
if ( $self->has_include_paths ) { |
|
151
|
0
|
|
|
|
|
|
map { my $str = $_->absolute->stringify; $cwd_files->{$str} = 1 } |
|
|
0
|
|
|
|
|
|
|
|
152
|
0
|
|
|
|
|
|
@{ $self->include_paths }; |
|
|
0
|
|
|
|
|
|
|
|
153
|
|
|
|
|
|
|
} |
|
154
|
0
|
|
|
|
|
|
push( @{ $self->exclude_paths }, path('.git') ); |
|
|
0
|
|
|
|
|
|
|
|
155
|
0
|
|
|
|
|
|
push( @{ $self->exclude_paths }, path(getcwd()) ); |
|
|
0
|
|
|
|
|
|
|
|
156
|
0
|
|
|
|
|
|
map { my $str = $_->absolute->stringify; delete $cwd_files->{$str} } |
|
|
0
|
|
|
|
|
|
|
|
157
|
0
|
|
|
|
|
|
@{ $self->exclude_paths }; |
|
|
0
|
|
|
|
|
|
|
|
158
|
|
|
|
|
|
|
|
|
159
|
0
|
|
|
|
|
|
my @keys = keys %{$cwd_files}; |
|
|
0
|
|
|
|
|
|
|
|
160
|
0
|
|
|
|
|
|
@keys = sort(@keys); |
|
161
|
0
|
|
|
|
|
|
my @rel_files = map { path($_)->relative } @keys; |
|
|
0
|
|
|
|
|
|
|
|
162
|
|
|
|
|
|
|
|
|
163
|
0
|
|
|
|
|
|
return \@rel_files; |
|
164
|
|
|
|
|
|
|
} |
|
165
|
|
|
|
|
|
|
|
|
166
|
|
|
|
|
|
|
1; |