| line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
|
1
|
|
|
|
|
|
|
package ClarID::Tools; |
|
2
|
|
|
|
|
|
|
|
|
3
|
41
|
|
|
41
|
|
308
|
use strict; |
|
|
41
|
|
|
|
|
81
|
|
|
|
41
|
|
|
|
|
1594
|
|
|
4
|
41
|
|
|
41
|
|
234
|
use warnings; |
|
|
41
|
|
|
|
|
73
|
|
|
|
41
|
|
|
|
|
2560
|
|
|
5
|
41
|
|
|
41
|
|
23591
|
use File::ShareDir::ProjectDistDir qw(dist_dir); |
|
|
41
|
|
|
|
|
2241929
|
|
|
|
41
|
|
|
|
|
465
|
|
|
6
|
|
|
|
|
|
|
|
|
7
|
|
|
|
|
|
|
# This turns ClarID::Tools into an App::Cmd “app” |
|
8
|
41
|
|
|
41
|
|
43506
|
use App::Cmd::Setup -app; |
|
|
41
|
|
|
|
|
1769148
|
|
|
|
41
|
|
|
|
|
418
|
|
|
9
|
|
|
|
|
|
|
|
|
10
|
|
|
|
|
|
|
# Central version for your entire CLI suite |
|
11
|
|
|
|
|
|
|
our $VERSION = '0.02'; |
|
12
|
|
|
|
|
|
|
|
|
13
|
|
|
|
|
|
|
# Share dir |
|
14
|
|
|
|
|
|
|
our $share_dir = dist_dir('ClarID-Tools'); |
|
15
|
|
|
|
|
|
|
|
|
16
|
|
|
|
|
|
|
1; |
|
17
|
|
|
|
|
|
|
|
|
18
|
|
|
|
|
|
|
=pod |
|
19
|
|
|
|
|
|
|
|
|
20
|
|
|
|
|
|
|
=head1 NAME |
|
21
|
|
|
|
|
|
|
|
|
22
|
|
|
|
|
|
|
ClarID::Tools - ClarID: A Human-Readable and Compact Identifier Specification for Biomedical Metadata Integration |
|
23
|
|
|
|
|
|
|
|
|
24
|
|
|
|
|
|
|
=head1 DESCRIPTION |
|
25
|
|
|
|
|
|
|
|
|
26
|
|
|
|
|
|
|
We recommend using the included L. |
|
27
|
|
|
|
|
|
|
|
|
28
|
|
|
|
|
|
|
For a better description, please read the following documentation: |
|
29
|
|
|
|
|
|
|
|
|
30
|
|
|
|
|
|
|
=over |
|
31
|
|
|
|
|
|
|
|
|
32
|
|
|
|
|
|
|
=item General: |
|
33
|
|
|
|
|
|
|
|
|
34
|
|
|
|
|
|
|
L |
|
35
|
|
|
|
|
|
|
|
|
36
|
|
|
|
|
|
|
=item Command-Line Interface: |
|
37
|
|
|
|
|
|
|
|
|
38
|
|
|
|
|
|
|
L |
|
39
|
|
|
|
|
|
|
|
|
40
|
|
|
|
|
|
|
=back |
|
41
|
|
|
|
|
|
|
|
|
42
|
|
|
|
|
|
|
=head1 CITATION |
|
43
|
|
|
|
|
|
|
|
|
44
|
|
|
|
|
|
|
The author requests that any published work that utilizes C includes a cite to the following reference: |
|
45
|
|
|
|
|
|
|
|
|
46
|
|
|
|
|
|
|
Manuel Rueda and Ivo G. Gut (2025). ClarID: A Human-Readable and Compact Identifier Specification for Biomedical Metadata Integration. I. |
|
47
|
|
|
|
|
|
|
|
|
48
|
|
|
|
|
|
|
|
|
49
|
|
|
|
|
|
|
=head1 AUTHOR |
|
50
|
|
|
|
|
|
|
|
|
51
|
|
|
|
|
|
|
Written by Manuel Rueda, PhD. Info about CNAG can be found at L. |
|
52
|
|
|
|
|
|
|
|
|
53
|
|
|
|
|
|
|
=head1 COPYRIGHT |
|
54
|
|
|
|
|
|
|
|
|
55
|
|
|
|
|
|
|
This PERL file is copyrighted. See the LICENSE file included in this distribution. |
|
56
|
|
|
|
|
|
|
|