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1
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package BioSAILs::Utils::LoadConfigs; |
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3
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1
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2453757
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use 5.010; |
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1
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3
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4
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1
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1
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5
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use utf8; |
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2
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1
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8
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5
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6
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1
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1
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24
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use namespace::autoclean; |
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1
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3
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1
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8
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7
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1
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1
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311
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use MooseX::App::Role; |
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1
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1821
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1
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4
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8
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9
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1
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1
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8075
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use Config::Any; |
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1
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1162
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1
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31
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10
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1
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1
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305
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use File::HomeDir; |
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1
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4191
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1
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61
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11
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1
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1
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7
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use Cwd; |
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1
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2
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1
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52
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12
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1
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1
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288
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use MooseX::Types::Path::Tiny qw/Path Paths AbsPaths AbsFile/; |
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406318
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1
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13
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13
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1
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1
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3521
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use Path::Tiny; |
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1
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3
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1
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71
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14
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1
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1
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9
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use Try::Tiny; |
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1
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3
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1
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54
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15
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1
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1
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513
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use Hash::Merge qw( merge ); |
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1
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2176
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1
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858
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16
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17
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option 'no_configs' => ( |
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18
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is => 'rw', |
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19
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isa => 'Bool', |
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20
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default => 0, |
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21
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documentation => '--no_configs tells HPC::Runner not to load any configs', |
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22
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); |
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23
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24
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option 'config' => ( |
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25
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isa => 'Str', |
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26
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is => 'rw', |
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27
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required => 0, |
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28
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documentation => 'Override the search paths and supply your own config.', |
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29
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isa => AbsFile, |
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30
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coerce => 1, |
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31
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predicate => 'has_config', |
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32
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); |
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33
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34
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option 'config_base' => ( |
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35
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is => 'rw', |
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36
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isa => 'Str', |
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37
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default => '.config', |
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38
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documentation => 'Basename of config files', |
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39
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); |
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40
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41
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option 'search' => ( |
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42
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traits => ['Bool'], |
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43
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is => 'rw', |
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44
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isa => 'Bool', |
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45
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default => 1, |
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46
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handles => { |
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47
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'no_search' => 'unset', |
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48
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}, |
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49
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documentation => |
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50
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'Search for config files in ~/.config.(ext) and in your current working directory.' |
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51
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); |
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52
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53
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option 'search_path' => ( |
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54
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traits => ['Array'], |
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55
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is => 'rw', |
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56
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isa => 'ArrayRef[Str]', |
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57
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default => sub { [ File::HomeDir->my_home, getcwd() ] }, |
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58
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handles => { |
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59
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all_search_path => 'elements', |
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60
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append_search_path => 'push', |
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61
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prepend_search_path => 'unshift', |
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62
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map_search_path => 'map', |
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63
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has_search_path => 'count', |
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64
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}, |
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65
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documentation => |
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66
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'Enable a search path for configs. Default is the home dir and your cwd.' |
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67
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); |
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68
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69
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has 'filter_keys' => ( |
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70
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is => 'rw', |
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71
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traits => ['Array'], |
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72
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is => 'rw', |
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73
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isa => 'ArrayRef[Str]', |
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74
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default => sub { [] }, |
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75
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handles => { |
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76
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all_filter_keys => 'elements', |
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77
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append_filter_keys => 'push', |
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78
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prepend_filter_keys => 'unshift', |
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79
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map_filter_keys => 'map', |
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80
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has_filter_keys => 'count', |
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81
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}, |
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82
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); |
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83
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84
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has 'config_files' => ( |
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85
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traits => ['Array'], |
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86
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is => 'rw', |
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87
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isa => AbsPaths, |
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88
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coerce => 1, |
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89
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default => sub { [] }, |
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90
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handles => { |
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91
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all_config_files => 'elements', |
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92
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append_config_files => 'push', |
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93
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prepend_config_files => 'unshift', |
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94
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map_config_files => 'map', |
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95
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has_config_files => 'count', |
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96
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count_config_files => 'count', |
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97
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}, |
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98
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); |
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99
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100
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has '_config_data' => ( |
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101
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is => 'rw', |
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102
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isa => 'ArrayRef', |
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103
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predicate => 'has_config_data', |
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104
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default => sub { [] }, |
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105
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); |
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106
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107
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has '_merged_config_data' => ( |
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108
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is => 'rw', |
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109
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isa => 'HashRef', |
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110
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predicate => 'has_merged_config_data', |
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111
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default => sub { return {} }, |
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112
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); |
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113
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114
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0
|
0
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sub BUILD { } |
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115
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116
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before 'BUILD' => sub { |
|
117
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my $self = shift; |
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118
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119
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return if $self->no_configs; |
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120
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$self->decide_search_configs; |
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121
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}; |
|
122
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123
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sub decide_search_configs { |
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124
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0
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0
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0
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my $self = shift; |
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125
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126
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0
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0
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if ( $self->has_config ) { |
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0
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127
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0
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$self->append_config_files( $self->config ); |
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128
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0
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$self->load_configs; |
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129
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} |
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130
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elsif ( $self->search ) { |
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131
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0
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$self->search_configs; |
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132
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} |
|
133
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} |
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134
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135
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sub search_configs { |
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136
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0
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0
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0
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my $self = shift; |
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137
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0
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my $extension = shift; |
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138
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139
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0
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foreach my $extension ( Config::Any->extensions ) { |
|
140
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0
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foreach my $dir ( $self->all_search_path ) { |
|
141
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0
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my $dir = $dir . '/'; |
|
142
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143
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#We will check with and without extensions |
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144
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0
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my $check_file; |
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145
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0
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$check_file = File::Spec->catfile( $dir . $self->config_base ); |
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146
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0
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0
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$self->append_config_files($check_file) if -f $check_file; |
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147
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148
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0
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$check_file = |
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149
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File::Spec->catfile( |
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150
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$dir . $self->config_base . '.' . $extension ); |
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151
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0
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0
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$self->append_config_files($check_file) if -f $check_file; |
|
152
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} |
|
153
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} |
|
154
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|
155
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0
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$self->load_configs; |
|
156
|
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|
157
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} |
|
158
|
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|
159
|
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sub load_configs { |
|
160
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
161
|
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162
|
0
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|
my $command_name = $self->{_original_class_name}; |
|
163
|
0
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|
my $cfg = |
|
164
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Config::Any->load_files( { files => $self->config_files, use_ext => 1 } ); |
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165
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166
|
0
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$self->_config_data($cfg); |
|
167
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168
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0
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$self->apply_configs; |
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169
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} |
|
170
|
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171
|
|
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|
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sub apply_configs { |
|
172
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
173
|
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174
|
0
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|
my $command_name = $self->{_original_class_name}; |
|
175
|
0
|
|
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|
|
for ( my $x = 0 ; $x < $self->count_config_files ; $x++ ) { |
|
176
|
0
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|
my $c = $self->_config_data->[$x]->{ $self->config_files->[$x] }; |
|
177
|
0
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|
my $old = $self->_merged_config_data; |
|
178
|
0
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|
my $new = merge($c, $old); |
|
179
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0
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|
|
$self->_merged_config_data($new); |
|
180
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181
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0
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|
my @keys = keys %{$c}; |
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0
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182
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183
|
0
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0
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|
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if ( !$self->has_filter_keys ) { |
|
184
|
0
|
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|
|
my @filter_keys = grep { $_ ne 'global' } @keys; |
|
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0
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185
|
0
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|
|
$self->filter_keys( \@filter_keys ); |
|
186
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} |
|
187
|
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|
188
|
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|
|
#Global is always applied |
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189
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0
|
0
|
|
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|
|
$self->apply_attributes( $c, 'global' ) if exists $c->{global}; |
|
190
|
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191
|
0
|
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|
|
map { $self->apply_attributes( $c, $_ ) } $self->all_filter_keys; |
|
|
0
|
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192
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} |
|
193
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|
194
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} |
|
195
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|
|
|
|
|
|
|
196
|
|
|
|
|
|
|
sub apply_attributes { |
|
197
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
198
|
0
|
|
|
|
|
|
my $conf = shift; |
|
199
|
0
|
|
|
|
|
|
my $attr = shift; |
|
200
|
|
|
|
|
|
|
|
|
201
|
0
|
0
|
|
|
|
|
return unless ref($conf) eq 'HASH'; |
|
202
|
0
|
0
|
|
|
|
|
return unless ref( $conf->{$attr} ) eq 'HASH'; |
|
203
|
|
|
|
|
|
|
|
|
204
|
0
|
|
|
|
|
|
while ( my ( $key, $value ) = each %{ $conf->{$attr} } ) { |
|
|
0
|
|
|
|
|
|
|
|
205
|
|
|
|
|
|
|
|
|
206
|
0
|
0
|
|
|
|
|
if ( $self->can($key) ) { |
|
207
|
|
|
|
|
|
|
try { |
|
208
|
0
|
|
|
0
|
|
|
$self->$key($value); |
|
209
|
|
|
|
|
|
|
} |
|
210
|
|
|
|
|
|
|
catch { |
|
211
|
0
|
|
|
0
|
|
|
warn 'You tried to assign ' . $key . ' to ' . $value . "\n"; |
|
212
|
0
|
|
|
|
|
|
}; |
|
213
|
|
|
|
|
|
|
} |
|
214
|
|
|
|
|
|
|
} |
|
215
|
|
|
|
|
|
|
} |
|
216
|
|
|
|
|
|
|
|
|
217
|
|
|
|
|
|
|
1; |