| line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
|
1
|
|
|
|
|
|
|
package Bio::GMOD::Util::CheckVersions; |
|
2
|
8
|
|
|
8
|
|
52469
|
use strict; |
|
|
8
|
|
|
|
|
20
|
|
|
|
8
|
|
|
|
|
355
|
|
|
3
|
|
|
|
|
|
|
|
|
4
|
8
|
|
|
8
|
|
14300
|
use Bio::GMOD; |
|
|
8
|
|
|
|
|
25
|
|
|
|
8
|
|
|
|
|
217
|
|
|
5
|
8
|
|
|
8
|
|
50
|
use Bio::GMOD::Util::Rearrange; |
|
|
8
|
|
|
|
|
15
|
|
|
|
8
|
|
|
|
|
535
|
|
|
6
|
8
|
|
|
8
|
|
10485
|
use LWP::UserAgent; |
|
|
8
|
|
|
|
|
468921
|
|
|
|
8
|
|
|
|
|
285
|
|
|
7
|
8
|
|
|
8
|
|
4127
|
use XML::Simple; |
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
8
|
|
|
|
|
|
|
|
|
9
|
|
|
|
|
|
|
use vars qw/@ISA/; |
|
10
|
|
|
|
|
|
|
|
|
11
|
|
|
|
|
|
|
@ISA = qw/Bio::GMOD/; |
|
12
|
|
|
|
|
|
|
|
|
13
|
|
|
|
|
|
|
sub live_version { |
|
14
|
|
|
|
|
|
|
my ($self,@p) = @_; |
|
15
|
|
|
|
|
|
|
my $adaptor = $self->adaptor; |
|
16
|
|
|
|
|
|
|
my $response = $self->_check_version($adaptor->live_url,$adaptor->version_live); |
|
17
|
|
|
|
|
|
|
# Save the current live version |
|
18
|
|
|
|
|
|
|
$adaptor->{defaults}->{live_version} = $response->{version}; |
|
19
|
|
|
|
|
|
|
return (wantarray ? %$response : $response->{version}); |
|
20
|
|
|
|
|
|
|
} |
|
21
|
|
|
|
|
|
|
|
|
22
|
|
|
|
|
|
|
|
|
23
|
|
|
|
|
|
|
sub development_version { |
|
24
|
|
|
|
|
|
|
my ($self,@p) = @_; |
|
25
|
|
|
|
|
|
|
my $adaptor = $self->adaptor; |
|
26
|
|
|
|
|
|
|
unless ($adaptor->development_url) { |
|
27
|
|
|
|
|
|
|
return (wantarray ? ( site => 'no development server specified' ) : 'no development server specified'); |
|
28
|
|
|
|
|
|
|
} |
|
29
|
|
|
|
|
|
|
my $response = $self->_check_version($adaptor->development_url,$adaptor->version_dev); |
|
30
|
|
|
|
|
|
|
# Save the current dev version |
|
31
|
|
|
|
|
|
|
$adaptor->{defaults}->{dev_version} = $response->{version}; |
|
32
|
|
|
|
|
|
|
return (wantarray ? %$response : $response->{version}); |
|
33
|
|
|
|
|
|
|
} |
|
34
|
|
|
|
|
|
|
|
|
35
|
|
|
|
|
|
|
sub mirror_version { |
|
36
|
|
|
|
|
|
|
my ($self,@p) = @_; |
|
37
|
|
|
|
|
|
|
my ($site,$cgi) = rearrange([qw/SITE CGI/],@p); |
|
38
|
|
|
|
|
|
|
my $adaptor = $self->adaptor; |
|
39
|
|
|
|
|
|
|
$site =~ s/\/$//; |
|
40
|
|
|
|
|
|
|
my $response = $self->_check_version($site,"$site/$cgi"); |
|
41
|
|
|
|
|
|
|
return (wantarray ? %$response : $response->{version}); |
|
42
|
|
|
|
|
|
|
} |
|
43
|
|
|
|
|
|
|
|
|
44
|
|
|
|
|
|
|
# Local version should be supplied by subclass |
|
45
|
|
|
|
|
|
|
# We not yet have instantiated a CheckVersions::* object |
|
46
|
|
|
|
|
|
|
# if we have come from, say, Update::* |
|
47
|
|
|
|
|
|
|
# Instantiate now, and pass the parent class for the adaptor |
|
48
|
|
|
|
|
|
|
# Exceptionally poor design flaw. |
|
49
|
|
|
|
|
|
|
sub local_version { |
|
50
|
|
|
|
|
|
|
my $self = shift; |
|
51
|
|
|
|
|
|
|
my $mod = $self->mod; |
|
52
|
|
|
|
|
|
|
my $subclass = "Bio::GMOD::Util::CheckVersions::$mod"; |
|
53
|
|
|
|
|
|
|
eval "require $subclass" or $self->logit(-msg=>"Could not subclass $subclass: $!",-die=>1); |
|
54
|
|
|
|
|
|
|
my %response = $subclass->local_version(-parent => $self); |
|
55
|
|
|
|
|
|
|
return (wantarray ? %response : $response{version}); |
|
56
|
|
|
|
|
|
|
} |
|
57
|
|
|
|
|
|
|
|
|
58
|
|
|
|
|
|
|
# Placeholder - not sure if I am going to implement this |
|
59
|
|
|
|
|
|
|
#sub package_version { |
|
60
|
|
|
|
|
|
|
#} |
|
61
|
|
|
|
|
|
|
|
|
62
|
|
|
|
|
|
|
# Read the contents of a provided symlink (or path) to parse out a version |
|
63
|
|
|
|
|
|
|
# Returning the full path the symlink points at, the installed version |
|
64
|
|
|
|
|
|
|
# and its modtime |
|
65
|
|
|
|
|
|
|
sub read_symlink { |
|
66
|
|
|
|
|
|
|
my ($self,$path) = @_; |
|
67
|
|
|
|
|
|
|
my $realdir = -l $path ? readlink $path : $path; |
|
68
|
|
|
|
|
|
|
my ($root) = $path =~ /(.*\/).*/; |
|
69
|
|
|
|
|
|
|
my $full_path = $root . "/$realdir"; |
|
70
|
|
|
|
|
|
|
my @temp = stat($full_path); |
|
71
|
|
|
|
|
|
|
my $modtime = localtime($temp[9]); |
|
72
|
|
|
|
|
|
|
return ($realdir,$modtime); |
|
73
|
|
|
|
|
|
|
} |
|
74
|
|
|
|
|
|
|
|
|
75
|
|
|
|
|
|
|
|
|
76
|
|
|
|
|
|
|
|
|
77
|
|
|
|
|
|
|
|
|
78
|
|
|
|
|
|
|
################################## |
|
79
|
|
|
|
|
|
|
# PRIVATE METHODS |
|
80
|
|
|
|
|
|
|
################################## |
|
81
|
|
|
|
|
|
|
sub _check_version { |
|
82
|
|
|
|
|
|
|
my ($self,$site,$url) = @_; |
|
83
|
|
|
|
|
|
|
# Version script holds a simple cgi that dumps out the |
|
84
|
|
|
|
|
|
|
# title, release date, and version of the database |
|
85
|
|
|
|
|
|
|
$url ||= $site; |
|
86
|
|
|
|
|
|
|
my $version = $self->biogmod_version; |
|
87
|
|
|
|
|
|
|
my $ua = LWP::UserAgent->new(); |
|
88
|
|
|
|
|
|
|
$ua->agent("Bio::GMOD::Util::CheckVersions/$version"); |
|
89
|
|
|
|
|
|
|
my $request = HTTP::Request->new('GET',$url); |
|
90
|
|
|
|
|
|
|
my $response = $ua->request($request); |
|
91
|
|
|
|
|
|
|
my %response; |
|
92
|
|
|
|
|
|
|
if ($response->is_success) { |
|
93
|
|
|
|
|
|
|
# Parse out the content |
|
94
|
|
|
|
|
|
|
my $content = $response->content; |
|
95
|
|
|
|
|
|
|
my $parsed = XMLin($content); |
|
96
|
|
|
|
|
|
|
foreach (keys %{$parsed}) { |
|
97
|
|
|
|
|
|
|
$response{$_} = $parsed->{$_}; |
|
98
|
|
|
|
|
|
|
} |
|
99
|
|
|
|
|
|
|
$response{status} = "SUCCESS"; |
|
100
|
|
|
|
|
|
|
} else { |
|
101
|
|
|
|
|
|
|
$response{error} = "FAILURE: Couldn't check version: " . $response->status_line; |
|
102
|
|
|
|
|
|
|
} |
|
103
|
|
|
|
|
|
|
$response{url} = $site; |
|
104
|
|
|
|
|
|
|
return \%response; |
|
105
|
|
|
|
|
|
|
} |
|
106
|
|
|
|
|
|
|
|
|
107
|
|
|
|
|
|
|
|
|
108
|
|
|
|
|
|
|
|
|
109
|
|
|
|
|
|
|
__END__ |