File Coverage

blib/lib/Bio/Chado/Schema/Result/Phylogeny/Phylonode.pm

Criterion	Covered	Total	%
statement	11	12	91.6
branch			n/a
condition			n/a
subroutine	5	6	83.3
pod	1	1	100.0
total	17	19	89.4

package Bio::Chado::Schema::Result::Phylogeny::Phylonode;
BEGIN {
  $Bio::Chado::Schema::Result::Phylogeny::Phylonode::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
  $Bio::Chado::Schema::Result::Phylogeny::Phylonode::VERSION = '0.08001'; # TRIAL
}

# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE

use strict;
use warnings;

use base 'DBIx::Class::Core';



__PACKAGE__->table("phylonode");


__PACKAGE__->add_columns(
  "phylonode_id",
  {
    data_type         => "integer",
    is_auto_increment => 1,
    is_nullable       => 0,
    sequence          => "phylonode_phylonode_id_seq",
  },
  "phylotree_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "parent_phylonode_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
  "left_idx",
  { data_type => "integer", is_nullable => 0 },
  "right_idx",
  { data_type => "integer", is_nullable => 0 },
  "type_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
  "feature_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
  "label",
  { data_type => "varchar", is_nullable => 1, size => 255 },
  "distance",
  { data_type => "double precision", is_nullable => 1 },
);
__PACKAGE__->set_primary_key("phylonode_id");
__PACKAGE__->add_unique_constraint("phylonode_phylotree_id_key1", ["phylotree_id", "right_idx"]);
__PACKAGE__->add_unique_constraint("phylonode_phylotree_id_key", ["phylotree_id", "left_idx"]);


__PACKAGE__->belongs_to(
  "feature",
  "Bio::Chado::Schema::Result::Sequence::Feature",
  { feature_id => "feature_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    join_type      => "LEFT",
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->belongs_to(
  "type",
  "Bio::Chado::Schema::Result::Cv::Cvterm",
  { cvterm_id => "type_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    join_type      => "LEFT",
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->belongs_to(
  "parent_phylonode",
  "Bio::Chado::Schema::Result::Phylogeny::Phylonode",
  { phylonode_id => "parent_phylonode_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    join_type      => "LEFT",
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->has_many(
  "phylonodes",
  "Bio::Chado::Schema::Result::Phylogeny::Phylonode",
  { "foreign.parent_phylonode_id" => "self.phylonode_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->belongs_to(
  "phylotree",
  "Bio::Chado::Schema::Result::Phylogeny::Phylotree",
  { phylotree_id => "phylotree_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->has_many(
  "phylonode_dbxrefs",
  "Bio::Chado::Schema::Result::Phylogeny::PhylonodeDbxref",
  { "foreign.phylonode_id" => "self.phylonode_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->might_have(
  "phylonode_organism",
  "Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism",
  { "foreign.phylonode_id" => "self.phylonode_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "phylonodeprops",
  "Bio::Chado::Schema::Result::Phylogeny::Phylonodeprop",
  { "foreign.phylonode_id" => "self.phylonode_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "phylonode_pubs",
  "Bio::Chado::Schema::Result::Phylogeny::PhylonodePub",
  { "foreign.phylonode_id" => "self.phylonode_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "phylonode_relationship_objects",
  "Bio::Chado::Schema::Result::Phylogeny::PhylonodeRelationship",
  { "foreign.object_id" => "self.phylonode_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "phylonode_relationship_subjects",
  "Bio::Chado::Schema::Result::Phylogeny::PhylonodeRelationship",
  { "foreign.subject_id" => "self.phylonode_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


# Created by DBIx::Class::Schema::Loader v0.07001 @ 2010-08-16 23:01:56
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:Enm9XCEB+9rBuKsK1F1d0A


__PACKAGE__->load_components(qw( Tree::NestedSet ));

__PACKAGE__->tree_columns({qw{
    root_column   phylotree_id
    left_column   left_idx
    right_column  right_idx
    level_column  distance
}});

# distance is not usually reliable, so use a null parent ID to
# determine whether something is a root node
sub is_root { ! defined shift->parent_id }

# You can replace this text with custom content, and it will be preserved on regeneration
1;

__END__