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package Astro::Catalog::IO::FITSTable; |
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=head1 NAME |
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Astro::Catalog::IO::FITSTable - Binary FITS table I/O for Astro::Catalog. |
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=head1 SYNOPSIS |
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$cat = Astro::Catalog::IO::FITSTable->_read_catalog( $whatever ); |
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=cut |
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use 5.006; |
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use warnings; |
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use warnings::register; |
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use Carp; |
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use strict; |
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use Astro::Catalog; |
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use Astro::Catalog::Item; |
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use Astro::Catalog::Item::Morphology; |
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use Astro::Coords; |
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use Astro::FITS::CFITSIO qw/ :longnames :constants /; |
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use File::Temp qw/ tempfile /; |
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use Astro::Flux; |
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use Astro::FluxColor; |
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use Astro::Fluxes; |
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use DateTime; |
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use DateTime::Format::ISO8601; |
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use base qw/ Astro::Catalog::IO::Binary /; |
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use vars qw/ $VERSION $DEBUG /; |
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$VERSION = '4.31'; |
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$DEBUG = 0; |
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=begin __PUBLIC_METHODS__ |
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=head1 PUBLIC METHODS |
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These methods are usually called automatically from the C |
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constructor, but are available for public use. |
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=over 4 |
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=item B |
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Returns the requested input format for the FITSTable class, which is |
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'name', meaning the name of the file to be turned into an C |
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object. |
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$input_format = Astro::Catalog::IO::FITSTable->input_format; |
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=cut |
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sub input_format { |
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return "name"; |
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} |
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=back |
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=begin __PRIVATE_METHODS__ |
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=head1 PRIVATE METHODS |
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These methods are usually called automatically from the C |
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constructor. |
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=item B<_read_catalog> |
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Parses the binary FITS table and returns a new C object |
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containing the catalogue entries. |
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$cat = Astro::Catalog::IO::FITSTable->_read_catalog( $whatever ); |
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The current translations from FITS table column names to |
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C properties are: |
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=over 4 |
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=item No. - ID |
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=item X_coordinate - X |
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=item Y_coordinate - Y |
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=item RA & DEC - Coords |
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=item Isophotal_flux, Total_flux, Core_flux, Core1_flux, Core2_flux, |
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Core3_flux, Core4_flux, Core5_flux - C objects pushed into |
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the C fluxes accessor. |
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=item Ellipticity & Position_angle - Morphology |
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=back |
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RA and Dec are assumed to be in J2000 coordinates, and are in units |
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of radians. The isophotal flux is assumed to be in units of counts, |
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and is converted into a magnitude through the formula -2.5 * log10( flux ). |
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The position angle is assumed to be the angle measured counter- |
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clockwise from the positive x axis, in degrees. |
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An attempt to read in the DATE-OBS header is made so that flux measurements |
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can be timestamped. If the DATE-OBS header does not exist, then the current |
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date and time will be used for the flux timestamps. |
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=cut |
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112
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sub _read_catalog { |
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my $class = shift; |
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my %args = @_; |
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116
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if( ! defined( $args{'filename'} ) ) { |
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croak "Must supply a filename to read"; |
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} |
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my $filename = $args{'filename'}; |
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121
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my $obsid; |
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if( defined( $args{'obsid'} ) ) { |
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$obsid = $args{'obsid'}; |
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} else { |
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$obsid = []; |
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} |
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# A lookup table for column name mappings. |
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my %column_name = ( 'ID' => 'No.', |
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'X' => 'X_coordinate', |
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'Y' => 'Y_coordinate', |
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'RA' => 'RA', |
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'Dec' => 'DEC', |
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'isophotal_flux' => 'Isophotal_flux', |
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'total_flux' => 'Total_flux', |
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'core_flux' => 'Core_flux', |
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'core1_flux' => 'Core1_flux', |
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'core2_flux' => 'Core2_flux', |
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'core3_flux' => 'Core3_flux', |
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'core4_flux' => 'Core4_flux', |
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'core5_flux' => 'Core5_flux', |
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'ellipticity' => 'Ellipticity', |
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'position_angle' => 'Position_angle', |
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); |
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146
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# The new Astro::Catalog object. |
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my $catalog = new Astro::Catalog; |
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149
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# CFITSIO status variable. |
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my $status = 0; |
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152
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# Open the file using CFITSIO. |
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my $fptr = Astro::FITS::CFITSIO::open_file( $filename, |
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Astro::FITS::CFITSIO::READONLY(), |
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$status ); |
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if( $status != 0 ) { |
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Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
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croak "Error opening FITS file: $status $text"; |
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} |
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161
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# Get the number of HDUs in the FITS file. |
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$fptr->get_num_hdus( my $num_hdus, $status ); |
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if( $status != 0 ) { |
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Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
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croak "Error retrieving number of HDUs from FITS file: $status $text"; |
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} |
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168
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$fptr->get_hdu_num( my $hdu_pos ); |
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170
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while( $hdu_pos <= $num_hdus ) { |
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172
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# Get the type of HDU for the one we're at. |
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$fptr->get_hdu_type( my $hdutype, $status ); |
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if( $status != 0 ) { |
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Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
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croak "Error retrieving HDU type from FITS file: $status $text"; |
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} |
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if( $hdutype == BINARY_TBL ) { |
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# Try to retrieve the DATE-OBS header. This will be used |
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# to give each flux measurement a datetime stamp. If DATE-OBS |
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# cannot be determined, then set the datetime to the current |
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# time. |
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my $datetime; |
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$fptr->read_keyword( 'DATE-OBS', my $dateobs, my $comment, $status ); |
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if( $status != 0 ) { |
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if( $status == KEY_NO_EXIST ) { |
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# We can deal with this, just take the current time and set |
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# the status back to 0 (good). |
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$datetime = DateTime->now; |
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$status = 0; |
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} else { |
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Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
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croak "Error retrieving DATE-OBS header from FITS file: $status $text"; |
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} |
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} else { |
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# Strip out any characters that aren't meant to be there. |
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# read_keyword() puts single quotes around strings, so we need |
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# to get rid of those, along with any trailing Zs. |
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$dateobs =~ s/['Z]//g; |
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$datetime = DateTime::Format::ISO8601->parse_datetime( $dateobs ); |
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} |
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205
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my $waveband; |
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$fptr->read_keyword( 'FILTER', my $filter, my $filtercomment, $status ); |
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if( $status != 0 ) { |
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if( $status == KEY_NO_EXIST ) { |
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# We can deal with this, just set the filter to be 'unknown'. |
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$filter = 'unknown'; |
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$status = 0; |
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} else { |
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Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
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croak "Error retrieving FILTER header from FITS file: $status $text"; |
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} |
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} else { |
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# Strip out any characters that aren't meant to be there. |
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$filter =~ s/'//g; |
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$filter =~ s/^\s+//; |
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$filter =~ s/\s+$//; |
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} |
222
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$waveband = new Astro::WaveBand( Filter => $filter ); |
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224
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# Get the number of rows in this table. |
225
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$fptr->get_num_rows( my $nrows, $status ); |
226
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if( $status != 0 ) { |
227
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Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
228
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croak "Error retrieving number of rows from HDU $hdu_pos from FITS file: $status $text"; |
229
|
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|
} |
230
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231
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# Grab all the information we can from this HDU. |
232
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# First, get the column numbers for the ID, RA, Dec, flux, |
233
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# ellipticity, position angle, and x and y position. |
234
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$fptr->get_colnum( CASEINSEN, $column_name{'ID'}, my $id_column, $status ); |
235
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if( $status == COL_NOT_FOUND ) { |
236
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$status = 0; |
237
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$id_column = -1; |
238
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} elsif( $status != 0 ) { |
239
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Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
240
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croak "Error in finding ID column: $status $text"; |
241
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} |
242
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if( $id_column == 0 ) { $id_column = -1; } |
243
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print "ID column: $id_column\n" if $DEBUG; |
244
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245
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$fptr->get_colnum( CASEINSEN, $column_name{'RA'}, my $ra_column, $status ); |
246
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if( $status == COL_NOT_FOUND ) { |
247
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$status = 0; |
248
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$ra_column = -1; |
249
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} elsif( $status != 0 ) { |
250
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Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
251
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croak "Error in finding RA column: $status $text"; |
252
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} |
253
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if( $ra_column == 0 ) { $ra_column = -1; } |
254
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print "RA column: $ra_column\n" if $DEBUG; |
255
|
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256
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|
$fptr->get_colnum( CASEINSEN, $column_name{'Dec'}, my $dec_column, $status ); |
257
|
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|
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|
if( $status == COL_NOT_FOUND ) { |
258
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$status = 0; |
259
|
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|
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$dec_column = -1; |
260
|
|
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|
|
|
|
} elsif( $status != 0 ) { |
261
|
|
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|
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|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
262
|
|
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|
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|
|
croak "Error in finding Dec column: $status $text"; |
263
|
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|
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|
|
} |
264
|
|
|
|
|
|
|
if( $dec_column == 0 ) { $dec_column = -1; } |
265
|
|
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|
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|
|
print "Dec column: $dec_column\n" if $DEBUG; |
266
|
|
|
|
|
|
|
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267
|
|
|
|
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|
|
$fptr->get_colnum( CASEINSEN, $column_name{'isophotal_flux'}, my $iso_flux_column, $status ); |
268
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
269
|
|
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|
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|
$status = 0; |
270
|
|
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|
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|
|
$iso_flux_column = -1; |
271
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
272
|
|
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|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
273
|
|
|
|
|
|
|
croak "Error in finding isophotal flux column: $status $text"; |
274
|
|
|
|
|
|
|
} |
275
|
|
|
|
|
|
|
if( $iso_flux_column == 0 ) { $iso_flux_column = -1; } |
276
|
|
|
|
|
|
|
print "Isophotal flux column: $iso_flux_column\n" if $DEBUG; |
277
|
|
|
|
|
|
|
|
278
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'total_flux'}, my $total_flux_column, $status ); |
279
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
280
|
|
|
|
|
|
|
$status = 0; |
281
|
|
|
|
|
|
|
$total_flux_column = -1; |
282
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
283
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
284
|
|
|
|
|
|
|
croak "Error in finding total flux column: $status $text"; |
285
|
|
|
|
|
|
|
} |
286
|
|
|
|
|
|
|
if( $total_flux_column == 0 ) { $total_flux_column = -1; } |
287
|
|
|
|
|
|
|
print "Total flux column: $total_flux_column\n" if $DEBUG; |
288
|
|
|
|
|
|
|
|
289
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'core_flux'}, my $core_flux_column, $status ); |
290
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
291
|
|
|
|
|
|
|
$status = 0; |
292
|
|
|
|
|
|
|
$core_flux_column = -1; |
293
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
294
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
295
|
|
|
|
|
|
|
croak "Error in finding core flux column: $status $text"; |
296
|
|
|
|
|
|
|
} |
297
|
|
|
|
|
|
|
if( $core_flux_column == 0 ) { $core_flux_column = -1; } |
298
|
|
|
|
|
|
|
print "Core flux column: $core_flux_column\n" if $DEBUG; |
299
|
|
|
|
|
|
|
|
300
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'core1_flux'}, my $core1_flux_column, $status ); |
301
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
302
|
|
|
|
|
|
|
$status = 0; |
303
|
|
|
|
|
|
|
$core1_flux_column = -1; |
304
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
305
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
306
|
|
|
|
|
|
|
croak "Error in finding core1 flux column: $status $text"; |
307
|
|
|
|
|
|
|
} |
308
|
|
|
|
|
|
|
if( $core1_flux_column == 0 ) { $core1_flux_column = -1; } |
309
|
|
|
|
|
|
|
print "Core1 flux column: $core1_flux_column\n" if $DEBUG; |
310
|
|
|
|
|
|
|
|
311
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'core2_flux'}, my $core2_flux_column, $status ); |
312
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
313
|
|
|
|
|
|
|
$status = 0; |
314
|
|
|
|
|
|
|
$core2_flux_column = -1; |
315
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
316
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
317
|
|
|
|
|
|
|
croak "Error in finding core2 flux column: $status $text"; |
318
|
|
|
|
|
|
|
} |
319
|
|
|
|
|
|
|
if( $core2_flux_column == 0 ) { $core2_flux_column = -1; } |
320
|
|
|
|
|
|
|
print "Core2 flux column: $core2_flux_column\n" if $DEBUG; |
321
|
|
|
|
|
|
|
|
322
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'core3_flux'}, my $core3_flux_column, $status ); |
323
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
324
|
|
|
|
|
|
|
$status = 0; |
325
|
|
|
|
|
|
|
$core3_flux_column = -1; |
326
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
327
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
328
|
|
|
|
|
|
|
croak "Error in finding core3 flux column: $status $text"; |
329
|
|
|
|
|
|
|
} |
330
|
|
|
|
|
|
|
if( $core3_flux_column == 0 ) { $core3_flux_column = -1; } |
331
|
|
|
|
|
|
|
print "Core3 flux column: $core3_flux_column\n" if $DEBUG; |
332
|
|
|
|
|
|
|
|
333
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'core4_flux'}, my $core4_flux_column, $status ); |
334
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
335
|
|
|
|
|
|
|
$status = 0; |
336
|
|
|
|
|
|
|
$core4_flux_column = -1; |
337
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
338
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
339
|
|
|
|
|
|
|
croak "Error in finding core4 flux column: $status $text"; |
340
|
|
|
|
|
|
|
} |
341
|
|
|
|
|
|
|
if( $core4_flux_column == 0 ) { $core4_flux_column = -1; } |
342
|
|
|
|
|
|
|
print "Core4 flux column: $core4_flux_column\n" if $DEBUG; |
343
|
|
|
|
|
|
|
|
344
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'core5_flux'}, my $core5_flux_column, $status ); |
345
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
346
|
|
|
|
|
|
|
$status = 0; |
347
|
|
|
|
|
|
|
$core5_flux_column = -1; |
348
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
349
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
350
|
|
|
|
|
|
|
croak "Error in finding core5 flux column: $status $text"; |
351
|
|
|
|
|
|
|
} |
352
|
|
|
|
|
|
|
if( $core5_flux_column == 0 ) { $core5_flux_column = -1; } |
353
|
|
|
|
|
|
|
print "Core5 flux column: $core5_flux_column\n" if $DEBUG; |
354
|
|
|
|
|
|
|
|
355
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'ellipticity'}, my $ell_column, $status ); |
356
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
357
|
|
|
|
|
|
|
$status = 0; |
358
|
|
|
|
|
|
|
$id_column = -1; |
359
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
360
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
361
|
|
|
|
|
|
|
croak "Error in finding ellipticity column: $status $text"; |
362
|
|
|
|
|
|
|
} |
363
|
|
|
|
|
|
|
if( $ell_column == 0 ) { $ell_column = -1; } |
364
|
|
|
|
|
|
|
print "Ellipticity column: $ell_column\n" if $DEBUG; |
365
|
|
|
|
|
|
|
|
366
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'position_angle'}, my $posang_column, $status ); |
367
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
368
|
|
|
|
|
|
|
$status = 0; |
369
|
|
|
|
|
|
|
$id_column = -1; |
370
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
371
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
372
|
|
|
|
|
|
|
croak "Error in finding position angle column: $status $text"; |
373
|
|
|
|
|
|
|
} |
374
|
|
|
|
|
|
|
if( $posang_column == 0 ) { $posang_column = -1; } |
375
|
|
|
|
|
|
|
print "Position angle column: $posang_column\n" if $DEBUG; |
376
|
|
|
|
|
|
|
|
377
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'X'}, my $x_column, $status ); |
378
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
379
|
|
|
|
|
|
|
$status = 0; |
380
|
|
|
|
|
|
|
$id_column = -1; |
381
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
382
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
383
|
|
|
|
|
|
|
croak "Error in finding x-coordinate column: $status $text"; |
384
|
|
|
|
|
|
|
} |
385
|
|
|
|
|
|
|
if( $x_column == 0 ) { $x_column = -1; } |
386
|
|
|
|
|
|
|
print "X-coordinate column: $x_column\n" if $DEBUG; |
387
|
|
|
|
|
|
|
|
388
|
|
|
|
|
|
|
$fptr->get_colnum( CASEINSEN, $column_name{'Y'}, my $y_column, $status ); |
389
|
|
|
|
|
|
|
if( $status == COL_NOT_FOUND ) { |
390
|
|
|
|
|
|
|
$status = 0; |
391
|
|
|
|
|
|
|
$id_column = -1; |
392
|
|
|
|
|
|
|
} elsif( $status != 0 ) { |
393
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
394
|
|
|
|
|
|
|
croak "Error in finding y-coordinate column: $status $text"; |
395
|
|
|
|
|
|
|
} |
396
|
|
|
|
|
|
|
if( $y_column == 0 ) { $y_column = -1; } |
397
|
|
|
|
|
|
|
print "Y-coordinate column: $y_column\n" if $DEBUG; |
398
|
|
|
|
|
|
|
|
399
|
|
|
|
|
|
|
# Now that we've got all the columns defined, we need to grab each column |
400
|
|
|
|
|
|
|
# in one big array, then take those arrays and stuff the information into |
401
|
|
|
|
|
|
|
# Astro::Catalog::Item objects |
402
|
|
|
|
|
|
|
my $id; |
403
|
|
|
|
|
|
|
my $ra; |
404
|
|
|
|
|
|
|
my $dec; |
405
|
|
|
|
|
|
|
my ( $iso_flux, $total_flux, $core_flux, $core1_flux, $core2_flux, $core3_flux ); |
406
|
|
|
|
|
|
|
my ( $core4_flux, $core5_flux ); |
407
|
|
|
|
|
|
|
my $ell; |
408
|
|
|
|
|
|
|
my $posang; |
409
|
|
|
|
|
|
|
my $x_pos; |
410
|
|
|
|
|
|
|
my $y_pos; |
411
|
|
|
|
|
|
|
if( $id_column != -1 ) { |
412
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $id_column, 1, 1, $nrows, undef, $id, undef, $status ); |
413
|
|
|
|
|
|
|
if( $status != 0 ) { |
414
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
415
|
|
|
|
|
|
|
croak "Error in retrieving data for ID column: $status $text"; |
416
|
|
|
|
|
|
|
} |
417
|
|
|
|
|
|
|
} |
418
|
|
|
|
|
|
|
if( $ra_column != -1 ) { |
419
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $ra_column, 1, 1, $nrows, undef, $ra, undef, $status ); |
420
|
|
|
|
|
|
|
if( $status != 0 ) { |
421
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
422
|
|
|
|
|
|
|
croak "Error in retrieving data for RA column: $status $text"; |
423
|
|
|
|
|
|
|
} |
424
|
|
|
|
|
|
|
} |
425
|
|
|
|
|
|
|
if( $dec_column != -1 ) { |
426
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $dec_column, 1, 1, $nrows, undef, $dec, undef, $status ); |
427
|
|
|
|
|
|
|
if( $status != 0 ) { |
428
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
429
|
|
|
|
|
|
|
croak "Error in retrieving data for Dec column: $status $text"; |
430
|
|
|
|
|
|
|
} |
431
|
|
|
|
|
|
|
} |
432
|
|
|
|
|
|
|
if( $iso_flux_column != -1 ) { |
433
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $iso_flux_column, 1, 1, $nrows, undef, $iso_flux, undef, $status ); |
434
|
|
|
|
|
|
|
if( $status != 0 ) { |
435
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
436
|
|
|
|
|
|
|
croak "Error in retrieving data for isophotal flux column: $status $text"; |
437
|
|
|
|
|
|
|
} |
438
|
|
|
|
|
|
|
} |
439
|
|
|
|
|
|
|
if( $total_flux_column != -1 ) { |
440
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $total_flux_column, 1, 1, $nrows, undef, $total_flux, undef, $status ); |
441
|
|
|
|
|
|
|
if( $status != 0 ) { |
442
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
443
|
|
|
|
|
|
|
croak "Error in retrieving data for tottal flux column: $status $text"; |
444
|
|
|
|
|
|
|
} |
445
|
|
|
|
|
|
|
} |
446
|
|
|
|
|
|
|
if( $core_flux_column != -1 ) { |
447
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $core_flux_column, 1, 1, $nrows, undef, $core_flux, undef, $status ); |
448
|
|
|
|
|
|
|
if( $status != 0 ) { |
449
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
450
|
|
|
|
|
|
|
croak "Error in retrieving data for core flux column: $status $text"; |
451
|
|
|
|
|
|
|
} |
452
|
|
|
|
|
|
|
} |
453
|
|
|
|
|
|
|
if( $core1_flux_column != -1 ) { |
454
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $core1_flux_column, 1, 1, $nrows, undef, $core1_flux, undef, $status ); |
455
|
|
|
|
|
|
|
if( $status != 0 ) { |
456
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
457
|
|
|
|
|
|
|
croak "Error in retrieving data for core1 flux column: $status $text"; |
458
|
|
|
|
|
|
|
} |
459
|
|
|
|
|
|
|
} |
460
|
|
|
|
|
|
|
if( $core2_flux_column != -1 ) { |
461
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $core2_flux_column, 1, 1, $nrows, undef, $core2_flux, undef, $status ); |
462
|
|
|
|
|
|
|
if( $status != 0 ) { |
463
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
464
|
|
|
|
|
|
|
croak "Error in retrieving data for core2 flux column: $status $text"; |
465
|
|
|
|
|
|
|
} |
466
|
|
|
|
|
|
|
} |
467
|
|
|
|
|
|
|
if( $core3_flux_column != -1 ) { |
468
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $core3_flux_column, 1, 1, $nrows, undef, $core3_flux, undef, $status ); |
469
|
|
|
|
|
|
|
if( $status != 0 ) { |
470
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
471
|
|
|
|
|
|
|
croak "Error in retrieving data for core3 flux column: $status $text"; |
472
|
|
|
|
|
|
|
} |
473
|
|
|
|
|
|
|
} |
474
|
|
|
|
|
|
|
if( $core4_flux_column != -1 ) { |
475
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $core4_flux_column, 1, 1, $nrows, undef, $core4_flux, undef, $status ); |
476
|
|
|
|
|
|
|
if( $status != 0 ) { |
477
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
478
|
|
|
|
|
|
|
croak "Error in retrieving data for core4 flux column: $status $text"; |
479
|
|
|
|
|
|
|
} |
480
|
|
|
|
|
|
|
} |
481
|
|
|
|
|
|
|
if( $core5_flux_column != -1 ) { |
482
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $core5_flux_column, 1, 1, $nrows, undef, $core5_flux, undef, $status ); |
483
|
|
|
|
|
|
|
if( $status != 0 ) { |
484
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
485
|
|
|
|
|
|
|
croak "Error in retrieving data for core5 flux column: $status $text"; |
486
|
|
|
|
|
|
|
} |
487
|
|
|
|
|
|
|
} |
488
|
|
|
|
|
|
|
if( $ell_column != -1 ) { |
489
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $ell_column, 1, 1, $nrows, undef, $ell, undef, $status ); |
490
|
|
|
|
|
|
|
if( $status != 0 ) { |
491
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
492
|
|
|
|
|
|
|
croak "Error in retrieving data for ellipticity column: $status $text"; |
493
|
|
|
|
|
|
|
} |
494
|
|
|
|
|
|
|
} |
495
|
|
|
|
|
|
|
if( $posang_column != -1 ) { |
496
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $posang_column, 1, 1, $nrows, undef, $posang, undef, $status ); |
497
|
|
|
|
|
|
|
if( $status != 0 ) { |
498
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
499
|
|
|
|
|
|
|
croak "Error in retrieving data for position angle column: $status $text"; |
500
|
|
|
|
|
|
|
} |
501
|
|
|
|
|
|
|
} |
502
|
|
|
|
|
|
|
if( $x_column != -1 ) { |
503
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $x_column, 1, 1, $nrows, undef, $x_pos, undef, $status ); |
504
|
|
|
|
|
|
|
if( $status != 0 ) { |
505
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
506
|
|
|
|
|
|
|
croak "Error in retrieving data for x-coordinate column: $status $text"; |
507
|
|
|
|
|
|
|
} |
508
|
|
|
|
|
|
|
} |
509
|
|
|
|
|
|
|
if( $y_column != -1 ) { |
510
|
|
|
|
|
|
|
$fptr->read_col( TFLOAT, $y_column, 1, 1, $nrows, undef, $y_pos, undef, $status ); |
511
|
|
|
|
|
|
|
if( $status != 0 ) { |
512
|
|
|
|
|
|
|
Astro::FITS::CFITSIO::fits_get_errstatus( $status, my $text ); |
513
|
|
|
|
|
|
|
croak "Error in retrieving data for y-coordinate column: $status $text"; |
514
|
|
|
|
|
|
|
} |
515
|
|
|
|
|
|
|
} |
516
|
|
|
|
|
|
|
|
517
|
|
|
|
|
|
|
# Go through each array, grabbing the information and creating a |
518
|
|
|
|
|
|
|
# new Astro::Catalog::Item object each time through. |
519
|
|
|
|
|
|
|
for( my $i = 0; $i < $nrows; $i++ ) { |
520
|
|
|
|
|
|
|
my $id_value; |
521
|
|
|
|
|
|
|
if( defined( $id ) ) { |
522
|
|
|
|
|
|
|
$id_value = $id->[$i]; |
523
|
|
|
|
|
|
|
} |
524
|
|
|
|
|
|
|
my $ra_value; |
525
|
|
|
|
|
|
|
if( defined( $ra ) ) { |
526
|
|
|
|
|
|
|
$ra_value = $ra->[$i]; |
527
|
|
|
|
|
|
|
} |
528
|
|
|
|
|
|
|
my $dec_value; |
529
|
|
|
|
|
|
|
if( defined( $dec ) ) { |
530
|
|
|
|
|
|
|
$dec_value = $dec->[$i]; |
531
|
|
|
|
|
|
|
} |
532
|
|
|
|
|
|
|
my $iso_flux_value; |
533
|
|
|
|
|
|
|
if( defined( $iso_flux ) ) { |
534
|
|
|
|
|
|
|
$iso_flux_value = $iso_flux->[$i]; |
535
|
|
|
|
|
|
|
} |
536
|
|
|
|
|
|
|
my $total_flux_value; |
537
|
|
|
|
|
|
|
if( defined( $total_flux ) ) { |
538
|
|
|
|
|
|
|
$total_flux_value = $total_flux->[$i]; |
539
|
|
|
|
|
|
|
} |
540
|
|
|
|
|
|
|
my $core_flux_value; |
541
|
|
|
|
|
|
|
if( defined( $core_flux ) ) { |
542
|
|
|
|
|
|
|
$core_flux_value = $core_flux->[$i]; |
543
|
|
|
|
|
|
|
} |
544
|
|
|
|
|
|
|
my $core1_flux_value; |
545
|
|
|
|
|
|
|
if( defined( $core1_flux ) ) { |
546
|
|
|
|
|
|
|
$core1_flux_value = $core1_flux->[$i]; |
547
|
|
|
|
|
|
|
} |
548
|
|
|
|
|
|
|
my $core2_flux_value; |
549
|
|
|
|
|
|
|
if( defined( $core2_flux ) ) { |
550
|
|
|
|
|
|
|
$core2_flux_value = $core2_flux->[$i]; |
551
|
|
|
|
|
|
|
} |
552
|
|
|
|
|
|
|
my $core3_flux_value; |
553
|
|
|
|
|
|
|
if( defined( $core3_flux ) ) { |
554
|
|
|
|
|
|
|
$core3_flux_value = $core3_flux->[$i]; |
555
|
|
|
|
|
|
|
} |
556
|
|
|
|
|
|
|
my $core4_flux_value; |
557
|
|
|
|
|
|
|
if( defined( $core4_flux ) ) { |
558
|
|
|
|
|
|
|
$core4_flux_value = $core4_flux->[$i]; |
559
|
|
|
|
|
|
|
} |
560
|
|
|
|
|
|
|
my $core5_flux_value; |
561
|
|
|
|
|
|
|
if( defined( $core5_flux ) ) { |
562
|
|
|
|
|
|
|
$core5_flux_value = $core5_flux->[$i]; |
563
|
|
|
|
|
|
|
} |
564
|
|
|
|
|
|
|
my $ell_value; |
565
|
|
|
|
|
|
|
if( defined( $ell ) ) { |
566
|
|
|
|
|
|
|
$ell_value = $ell->[$i]; |
567
|
|
|
|
|
|
|
} |
568
|
|
|
|
|
|
|
my $posang_value; |
569
|
|
|
|
|
|
|
if( defined( $posang ) ) { |
570
|
|
|
|
|
|
|
$posang_value = $posang->[$i]; |
571
|
|
|
|
|
|
|
} |
572
|
|
|
|
|
|
|
my $x_pos_value; |
573
|
|
|
|
|
|
|
if( defined( $x_pos ) ) { |
574
|
|
|
|
|
|
|
$x_pos_value = $x_pos->[$i]; |
575
|
|
|
|
|
|
|
} |
576
|
|
|
|
|
|
|
my $y_pos_value; |
577
|
|
|
|
|
|
|
if( defined( $y_pos ) ) { |
578
|
|
|
|
|
|
|
$y_pos_value = $y_pos->[$i]; |
579
|
|
|
|
|
|
|
} |
580
|
|
|
|
|
|
|
|
581
|
|
|
|
|
|
|
# Set up the Astro::Coords object, assuming our RA and Dec are in units |
582
|
|
|
|
|
|
|
# of radians. |
583
|
|
|
|
|
|
|
my $coords; |
584
|
|
|
|
|
|
|
if( defined( $ra_value ) && defined( $dec_value ) ) { |
585
|
|
|
|
|
|
|
$coords = new Astro::Coords( ra => $ra_value, |
586
|
|
|
|
|
|
|
dec => $dec_value, |
587
|
|
|
|
|
|
|
units => 'radians', |
588
|
|
|
|
|
|
|
type => 'J2000', |
589
|
|
|
|
|
|
|
); |
590
|
|
|
|
|
|
|
} |
591
|
|
|
|
|
|
|
|
592
|
|
|
|
|
|
|
# Set up the Astro::Flux objects. |
593
|
|
|
|
|
|
|
my $iso_flux_obj = new Astro::Flux( $iso_flux_value, 'isophotal_flux', $waveband, |
594
|
|
|
|
|
|
|
datetime => $datetime, obsid => $obsid ); |
595
|
|
|
|
|
|
|
my $total_flux_obj = new Astro::Flux( $total_flux_value, 'total_flux', $waveband, |
596
|
|
|
|
|
|
|
datetime => $datetime, obsid => $obsid ); |
597
|
|
|
|
|
|
|
my $core_flux_obj = new Astro::Flux( $core_flux_value, 'core_flux', $waveband, |
598
|
|
|
|
|
|
|
datetime => $datetime, obsid => $obsid ); |
599
|
|
|
|
|
|
|
my $core1_flux_obj = new Astro::Flux( $core1_flux_value, 'core1_flux', $waveband, |
600
|
|
|
|
|
|
|
datetime => $datetime, obsid => $obsid ); |
601
|
|
|
|
|
|
|
my $core2_flux_obj = new Astro::Flux( $core2_flux_value, 'core2_flux', $waveband, |
602
|
|
|
|
|
|
|
datetime => $datetime, obsid => $obsid ); |
603
|
|
|
|
|
|
|
my $core3_flux_obj = new Astro::Flux( $core3_flux_value, 'core3_flux', $waveband, |
604
|
|
|
|
|
|
|
datetime => $datetime, obsid => $obsid ); |
605
|
|
|
|
|
|
|
my $core4_flux_obj = new Astro::Flux( $core4_flux_value, 'core4_flux', $waveband, |
606
|
|
|
|
|
|
|
datetime => $datetime, obsid => $obsid ); |
607
|
|
|
|
|
|
|
my $core5_flux_obj = new Astro::Flux( $core5_flux_value, 'core5_flux', $waveband, |
608
|
|
|
|
|
|
|
datetime => $datetime, obsid => $obsid ); |
609
|
|
|
|
|
|
|
|
610
|
|
|
|
|
|
|
# And set up the Astro::Catalog::Item::Morphology object. |
611
|
|
|
|
|
|
|
my $morphology = new Astro::Catalog::Item::Morphology( ellipticity => $ell_value, |
612
|
|
|
|
|
|
|
position_angle_pixel => $posang_value, |
613
|
|
|
|
|
|
|
); |
614
|
|
|
|
|
|
|
|
615
|
|
|
|
|
|
|
# And create the Astro::Catalog::Item object from this conglomoration of data. |
616
|
|
|
|
|
|
|
my $star = new Astro::Catalog::Item( ID => $id_value, |
617
|
|
|
|
|
|
|
Fluxes => new Astro::Fluxes( $iso_flux_obj, |
618
|
|
|
|
|
|
|
$total_flux_obj, |
619
|
|
|
|
|
|
|
$core_flux_obj, |
620
|
|
|
|
|
|
|
$core1_flux_obj, |
621
|
|
|
|
|
|
|
$core2_flux_obj, |
622
|
|
|
|
|
|
|
$core3_flux_obj, |
623
|
|
|
|
|
|
|
$core4_flux_obj, |
624
|
|
|
|
|
|
|
$core5_flux_obj ), |
625
|
|
|
|
|
|
|
Coords => $coords, |
626
|
|
|
|
|
|
|
X => $x_pos_value, |
627
|
|
|
|
|
|
|
Y => $y_pos_value, |
628
|
|
|
|
|
|
|
Morphology => $morphology ); |
629
|
|
|
|
|
|
|
|
630
|
|
|
|
|
|
|
# Push it onto the Astro::Catalog object. |
631
|
|
|
|
|
|
|
$catalog->pushstar( $star ); |
632
|
|
|
|
|
|
|
} |
633
|
|
|
|
|
|
|
|
634
|
|
|
|
|
|
|
} |
635
|
|
|
|
|
|
|
$status = 0; |
636
|
|
|
|
|
|
|
|
637
|
|
|
|
|
|
|
# Move to the next one. |
638
|
|
|
|
|
|
|
$fptr->movrel_hdu( 1, $hdutype, $status ); |
639
|
|
|
|
|
|
|
last if ( $status == END_OF_FILE ); |
640
|
|
|
|
|
|
|
|
641
|
|
|
|
|
|
|
# And set $hdu_pos. |
642
|
|
|
|
|
|
|
$fptr->get_hdu_num( $hdu_pos ); |
643
|
|
|
|
|
|
|
|
644
|
|
|
|
|
|
|
} |
645
|
|
|
|
|
|
|
|
646
|
|
|
|
|
|
|
# Set the origin. |
647
|
|
|
|
|
|
|
$catalog->origin( 'IO::FITSTable' ); |
648
|
|
|
|
|
|
|
|
649
|
|
|
|
|
|
|
# And return. |
650
|
|
|
|
|
|
|
return $catalog; |
651
|
|
|
|
|
|
|
|
652
|
|
|
|
|
|
|
} |
653
|
|
|
|
|
|
|
|
654
|
|
|
|
|
|
|
=item B<_write_catalog> |
655
|
|
|
|
|
|
|
|
656
|
|
|
|
|
|
|
Create an output catalog as a binary FITS table. |
657
|
|
|
|
|
|
|
|
658
|
|
|
|
|
|
|
$ref = Astro::Catalog::IO::FITSTable->_write_catalog( $catalog ); |
659
|
|
|
|
|
|
|
|
660
|
|
|
|
|
|
|
Argument is an C object. |
661
|
|
|
|
|
|
|
|
662
|
|
|
|
|
|
|
This method is not yet implemented. |
663
|
|
|
|
|
|
|
|
664
|
|
|
|
|
|
|
=cut |
665
|
|
|
|
|
|
|
|
666
|
|
|
|
|
|
|
sub _write_catalog { |
667
|
|
|
|
|
|
|
croak "Not yet implemented."; |
668
|
|
|
|
|
|
|
} |
669
|
|
|
|
|
|
|
|
670
|
|
|
|
|
|
|
=back |
671
|
|
|
|
|
|
|
|
672
|
|
|
|
|
|
|
=head1 REVISION |
673
|
|
|
|
|
|
|
|
674
|
|
|
|
|
|
|
$Id: FITSTable.pm,v 1.9 2006/05/02 21:39:10 cavanagh Exp $ |
675
|
|
|
|
|
|
|
|
676
|
|
|
|
|
|
|
=head1 SEE ALSO |
677
|
|
|
|
|
|
|
|
678
|
|
|
|
|
|
|
L |
679
|
|
|
|
|
|
|
|
680
|
|
|
|
|
|
|
=head1 COPYRIGHT |
681
|
|
|
|
|
|
|
|
682
|
|
|
|
|
|
|
Copyright (C) 2005 Particle Physics and Astronomy Research Council. |
683
|
|
|
|
|
|
|
All Rights Reserved. |
684
|
|
|
|
|
|
|
|
685
|
|
|
|
|
|
|
This program is free software; you can redistribute it and/or modify it under |
686
|
|
|
|
|
|
|
the terms of the GNU General Public License as published by the Free Software |
687
|
|
|
|
|
|
|
Foundation; either version 2 of the License, or (at your option) any later |
688
|
|
|
|
|
|
|
version. |
689
|
|
|
|
|
|
|
|
690
|
|
|
|
|
|
|
This program is distributed in the hope that it will be useful,but WITHOUT ANY |
691
|
|
|
|
|
|
|
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A |
692
|
|
|
|
|
|
|
PARTICULAR PURPOSE. See the GNU General Public License for more details. |
693
|
|
|
|
|
|
|
|
694
|
|
|
|
|
|
|
You should have received a copy of the GNU General Public License along with |
695
|
|
|
|
|
|
|
this program; if not, write to the Free Software Foundation, Inc., 59 Temple |
696
|
|
|
|
|
|
|
Place,Suite 330, Boston, MA 02111-1307, USA |
697
|
|
|
|
|
|
|
|
698
|
|
|
|
|
|
|
=head1 AUTHORS |
699
|
|
|
|
|
|
|
|
700
|
|
|
|
|
|
|
Brad Cavanagh Eb.cavanagh@jach.hawaii.eduE |
701
|
|
|
|
|
|
|
|
702
|
|
|
|
|
|
|
=cut |
703
|
|
|
|
|
|
|
|
704
|
|
|
|
|
|
|
1; |