|  line  | 
 stmt  | 
 bran  | 
 cond  | 
 sub  | 
 pod  | 
 time  | 
 code  | 
| 
1
 | 
 
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 | 
 
 | 
 
 | 
 
 | 
 
 | 
 package AlignDB::Stopwatch;  | 
| 
2
 | 
6
 | 
 
 | 
 
 | 
  
6
  
 | 
 
 | 
193101
 | 
 use Moose;  | 
| 
 
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2133907
 | 
    | 
| 
 
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
39
 | 
    | 
| 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
4
 | 
6
 | 
 
 | 
 
 | 
  
6
  
 | 
 
 | 
36923
 | 
 use Time::Duration;  | 
| 
 
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
10234
 | 
    | 
| 
 
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
549
 | 
    | 
| 
5
 | 
6
 | 
 
 | 
 
 | 
  
6
  
 | 
 
 | 
2771
 | 
 use Data::UUID;  | 
| 
 
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3539
 | 
    | 
| 
 
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
355
 | 
    | 
| 
6
 | 
6
 | 
 
 | 
 
 | 
  
6
  
 | 
 
 | 
86
 | 
 use File::Spec;  | 
| 
 
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
8
 | 
    | 
| 
 
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
126
 | 
    | 
| 
7
 | 
6
 | 
 
 | 
 
 | 
  
6
  
 | 
 
 | 
3035
 | 
 use YAML::Syck;  | 
| 
 
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9778
 | 
    | 
| 
 
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5787
 | 
    | 
| 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
9
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 our $VERSION = '1.1.0';  | 
| 
10
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
11
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 has program_name     => ( is => 'ro', isa => 'Str' );  | 
| 
12
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 has program_argv     => ( is => 'ro', isa => 'ArrayRef', default => sub { [] } );  | 
| 
13
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 has program_conf     => ( is => 'ro', isa => 'Object' );  | 
| 
14
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 has 'start_time'     => ( is => 'rw', isa => 'Value' );  | 
| 
15
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 has 'div_char'       => ( is => 'rw', isa => 'Str', default => sub {"="}, );  | 
| 
16
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 has 'div_length'     => ( is => 'rw', isa => 'Int', default => sub {30}, );  | 
| 
17
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 has 'min_div_length' => ( is => 'rw', isa => 'Int', default => sub {5} );  | 
| 
18
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 has uuid             => ( is => 'ro', isa => 'Str' );  | 
| 
19
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
20
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub BUILD {  | 
| 
21
 | 
5
 | 
 
 | 
 
 | 
  
5
  
 | 
  
0
  
 | 
5440
 | 
     my $self = shift;  | 
| 
22
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
23
 | 
5
 | 
 
 | 
 
 | 
 
 | 
 
 | 
47
 | 
     $self->{start_time} = time;  | 
| 
24
 | 
5
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2076
 | 
     $self->{uuid}       = Data::UUID->new->create_str;  | 
| 
25
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
26
 | 
5
 | 
 
 | 
 
 | 
 
 | 
 
 | 
10597
 | 
     return;  | 
| 
27
 | 
 
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 | 
 
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 | 
 
 | 
 
 | 
 }  | 
| 
28
 | 
 
 | 
 
 | 
 
 | 
 
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 | 
    | 
| 
29
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 #@returns AlignDB::Stopwatch  | 
| 
30
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub record {  | 
| 
31
 | 
1
 | 
 
 | 
 
 | 
  
1
  
 | 
  
1
  
 | 
13
 | 
     my $self = shift;  | 
| 
32
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
33
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
     $self->{program_name} = $main::0;  | 
| 
34
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
35
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
     $self->{program_argv} = [@main::ARGV];  | 
| 
36
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
37
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
     return $self;  | 
| 
38
 | 
 
 | 
 
 | 
 
 | 
 
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 | 
 
 | 
 }  | 
| 
39
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
40
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 #@returns AlignDB::Stopwatch  | 
| 
41
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub record_conf {  | 
| 
42
 | 
1
 | 
 
 | 
 
 | 
  
1
  
 | 
  
1
  
 | 
2
 | 
     my $self = shift;  | 
| 
43
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
     my $conf = shift;  | 
| 
44
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
45
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
     $self->{program_conf} = $conf;  | 
| 
46
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
47
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
     return $self;  | 
| 
48
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
49
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
50
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _divider {  | 
| 
51
 | 
6
 | 
 
 | 
 
 | 
  
6
  
 | 
 
 | 
12
 | 
     my $self  = shift;  | 
| 
52
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
8
 | 
     my $title = shift;  | 
| 
53
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
54
 | 
6
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
16
 | 
     my $title_length = $title ? length $title : 0;  | 
| 
55
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
56
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
320
 | 
     my $div_char       = $self->div_char;  | 
| 
57
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
348
 | 
     my $div_length     = $self->div_length;  | 
| 
58
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
360
 | 
     my $min_div_length = $self->min_div_length;  | 
| 
59
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
60
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
13
 | 
     my $divider_str;  | 
| 
61
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
62
 | 
6
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
32
 | 
     if ( !$title_length ) {  | 
| 
 
 | 
 
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
63
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
19
 | 
         $divider_str .= $div_char x $div_length;  | 
| 
64
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
8
 | 
         $divider_str .= "\n";  | 
| 
65
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
66
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     elsif ( $title_length > $div_length - 2 * $min_div_length ) {  | 
| 
67
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
         $divider_str .= $div_char x $min_div_length;  | 
| 
68
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
         $divider_str .= $title;  | 
| 
69
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
         $divider_str .= $div_char x $min_div_length;  | 
| 
70
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
         $divider_str .= "\n";  | 
| 
71
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
72
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     else {  | 
| 
73
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
7
 | 
         my $left_length = int( ( $div_length - $title_length ) / 2 );  | 
| 
74
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
17
 | 
         my $right_length = $div_length - $title_length - $left_length;  | 
| 
75
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
         $divider_str .= $div_char x $left_length;  | 
| 
76
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
         $divider_str .= $title;  | 
| 
77
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
1
 | 
         $divider_str .= $div_char x $right_length;  | 
| 
78
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
         $divider_str .= "\n";  | 
| 
79
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
80
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
81
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
21
 | 
     return $divider_str;  | 
| 
82
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
83
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
84
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _prompt {  | 
| 
85
 | 
6
 | 
 
 | 
 
 | 
  
6
  
 | 
 
 | 
5
 | 
     my $self = shift;  | 
| 
86
 | 
6
 | 
 
 | 
 
 | 
 
 | 
 
 | 
12
 | 
     return "==> ";  | 
| 
87
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
88
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
89
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _empty_line {  | 
| 
90
 | 
16
 | 
 
 | 
 
 | 
  
16
  
 | 
 
 | 
21
 | 
     my $self = shift;  | 
| 
91
 | 
16
 | 
 
 | 
 
 | 
 
 | 
 
 | 
36
 | 
     return "\n";  | 
| 
92
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
93
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
94
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _time {  | 
| 
95
 | 
8
 | 
 
 | 
 
 | 
  
8
  
 | 
 
 | 
15
 | 
     my $self  = shift;  | 
| 
96
 | 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
14
 | 
     my $title = shift;  | 
| 
97
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
98
 | 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
11
 | 
     my $time_str;  | 
| 
99
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
100
 | 
8
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
61
 | 
     if ( !defined $title ) {  | 
| 
 
 | 
 
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
 
 | 
 
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
101
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
         $time_str .= "Current time: ";  | 
| 
102
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
103
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     elsif ( $title =~ /start/i ) {  | 
| 
104
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
11
 | 
         $time_str .= "Start at: ";  | 
| 
105
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
106
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     elsif ( $title =~ /end/i ) {  | 
| 
107
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9
 | 
         $time_str .= "End at: ";  | 
| 
108
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
109
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     else {  | 
| 
110
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
         $time_str .= "$title: ";  | 
| 
111
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
112
 | 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
403
 | 
     $time_str .= scalar localtime;  | 
| 
113
 | 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
14
 | 
     $time_str .= "\n";  | 
| 
114
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
115
 | 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
36
 | 
     return $time_str;  | 
| 
116
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
117
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
118
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _duration {  | 
| 
119
 | 
3
 | 
 
 | 
 
 | 
  
3
  
 | 
 
 | 
7
 | 
     my $self = shift;  | 
| 
120
 | 
3
 | 
 
 | 
 
 | 
 
 | 
 
 | 
11
 | 
     return "Runtime " . $self->duration_now . ".\n";  | 
| 
121
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
122
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
123
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _message {  | 
| 
124
 | 
8
 | 
 
 | 
 
 | 
  
8
  
 | 
 
 | 
22
 | 
     my $self    = shift;  | 
| 
125
 | 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
10
 | 
     my $message = shift;  | 
| 
126
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
127
 | 
8
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
25
 | 
     $message = '' unless defined $message;  | 
| 
128
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
129
 | 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
36
 | 
     return $message . "\n";  | 
| 
130
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
131
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
132
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub duration_now {  | 
| 
133
 | 
7
 | 
 
 | 
 
 | 
  
7
  
 | 
  
0
  
 | 
2001821
 | 
     my $self = shift;  | 
| 
134
 | 
7
 | 
 
 | 
 
 | 
 
 | 
 
 | 
579
 | 
     return Time::Duration::duration( time - $self->start_time );  | 
| 
135
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
136
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
137
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub block_message {  | 
| 
138
 | 
4
 | 
 
 | 
 
 | 
  
4
  
 | 
  
1
  
 | 
2285
 | 
     my $self          = shift;  | 
| 
139
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
     my $message       = shift;  | 
| 
140
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
     my $with_duration = shift;  | 
| 
141
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
142
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
     my $text;  | 
| 
143
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
10
 | 
     $text .= $self->_empty_line;  | 
| 
144
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9
 | 
     $text .= $self->_prompt;  | 
| 
145
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
     $text .= $self->_message($message);  | 
| 
146
 | 
4
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
10
 | 
     if ($with_duration) {  | 
| 
147
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
2
 | 
         $text .= $self->_prompt;  | 
| 
148
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
3
 | 
         $text .= $self->_duration;  | 
| 
149
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
150
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
13
 | 
     $text .= $self->_empty_line;  | 
| 
151
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
152
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
97
 | 
     print $text;  | 
| 
153
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
154
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
17
 | 
     return;  | 
| 
155
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
156
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
157
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub start_message {  | 
| 
158
 | 
4
 | 
 
 | 
 
 | 
  
4
  
 | 
  
1
  
 | 
5676
 | 
     my $self             = shift;  | 
| 
159
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
14
 | 
     my $message          = shift;  | 
| 
160
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9
 | 
     my $embed_in_divider = shift;  | 
| 
161
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
162
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
33
 | 
     my $text;  | 
| 
163
 | 
4
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
19
 | 
     if ( defined $message ) {  | 
| 
164
 | 
3
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
13
 | 
         if ( defined $embed_in_divider ) {  | 
| 
165
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
24
 | 
             $text .= $self->_divider($message);  | 
| 
166
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
167
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         else {  | 
| 
168
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
19
 | 
             $text .= $self->_divider;  | 
| 
169
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
             $text .= $self->_message($message);  | 
| 
170
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         }  | 
| 
171
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
172
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     else {  | 
| 
173
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
5
 | 
         $text .= $self->_divider;  | 
| 
174
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
175
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
16
 | 
     $text .= $self->_time("start");  | 
| 
176
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
27
 | 
     $text .= $self->_empty_line;  | 
| 
177
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
178
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
300
 | 
     print $text;  | 
| 
179
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
180
 | 
4
 | 
 
 | 
 
 | 
 
 | 
 
 | 
24
 | 
     return;  | 
| 
181
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
182
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
183
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub end_message {  | 
| 
184
 | 
2
 | 
 
 | 
 
 | 
  
2
  
 | 
  
1
  
 | 
2079
 | 
     my $self    = shift;  | 
| 
185
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
8
 | 
     my $message = shift;  | 
| 
186
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
187
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
4
 | 
     my $text;  | 
| 
188
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
12
 | 
     $text .= $self->_empty_line;  | 
| 
189
 | 
2
 | 
  
100
  
 | 
 
 | 
 
 | 
 
 | 
15
 | 
     if ( defined $message ) {  | 
| 
190
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
7
 | 
         $text .= $self->_message($message);  | 
| 
191
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
192
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
193
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9
 | 
     $text .= $self->_time("end");  | 
| 
194
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
13
 | 
     $text .= $self->_duration;  | 
| 
195
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
43
 | 
     $text .= $self->_divider;  | 
| 
196
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
197
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
114
 | 
     print $text;  | 
| 
198
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
199
 | 
2
 | 
 
 | 
 
 | 
 
 | 
 
 | 
19
 | 
     return;  | 
| 
200
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
201
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
202
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub cmd_line {  | 
| 
203
 | 
1
 | 
 
 | 
 
 | 
  
1
  
 | 
  
0
  
 | 
2
 | 
     my $self = shift;  | 
| 
204
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
38
 | 
     return join( ' ', $self->program_name, @{ $self->program_argv } );  | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
29
 | 
    | 
| 
205
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
206
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
207
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub init_config {  | 
| 
208
 | 
1
 | 
 
 | 
 
 | 
  
1
  
 | 
  
0
  
 | 
1
 | 
     my $self = shift;  | 
| 
209
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
36
 | 
     return YAML::Syck::Dump $self->program_conf;  | 
| 
210
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
211
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
212
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub operation {  | 
| 
213
 | 
1
 | 
 
 | 
 
 | 
  
1
  
 | 
  
0
  
 | 
6
 | 
     my $self = shift;  | 
| 
214
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
39
 | 
     my ( undef, undef, $filename ) = File::Spec->splitpath( $self->program_name );  | 
| 
215
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
6
 | 
     return $filename;  | 
| 
216
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
217
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
218
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 1;  | 
| 
219
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
220
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 __END__  | 
| 
221
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
222
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head1 NAME  | 
| 
223
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
224
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 AlignDB::Stopwatch - Record running time and print standard messages  | 
| 
225
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
226
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head1 SYNOPSIS  | 
| 
227
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
228
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     use AlignDB::Stopwatch;  | 
| 
229
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
230
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     # record command line  | 
| 
231
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     my $stopwatch = AlignDB::Stopwatch->new->record;  | 
| 
232
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
233
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     # record config  | 
| 
234
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     $stopwatch->record_conf($opt);  | 
| 
235
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
236
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     $stopwatch->start_message("Doing really bad things...");  | 
| 
237
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
238
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     $stopwatch->end_message;  | 
| 
239
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
240
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head1 ATTRIBUTES  | 
| 
241
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
242
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 program_name  | 
| 
243
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
244
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 program name  | 
| 
245
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
246
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 program_argv  | 
| 
247
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
248
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 program command line options  | 
| 
249
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
250
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 program_conf  | 
| 
251
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
252
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 program configurations  | 
| 
253
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
254
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 start_time  | 
| 
255
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
256
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 start time  | 
| 
257
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
258
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 div_char  | 
| 
259
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
260
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Divider char used in output messages, default is [=]  | 
| 
261
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
262
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 div_length  | 
| 
263
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
264
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Length of divider char, default is [30]  | 
| 
265
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
266
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 min_div_length  | 
| 
267
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
268
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 minimal single-side divider length, default is [5]  | 
| 
269
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
270
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 uuid  | 
| 
271
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
272
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Use Data::UUID to generate a UUID that prevent inserting meta info more than  | 
| 
273
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 one time on multithreads mode  | 
| 
274
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
275
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head1 METHODS  | 
| 
276
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
277
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 record  | 
| 
278
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
279
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Record $main::0 to program_name and [@main::ARGV] to program_argv.  | 
| 
280
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
281
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Getopt::Long would manipulate @ARGV.  | 
| 
282
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
283
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     my $stopwatch = AlignDB::Stopwatch->new->record;  | 
| 
284
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
285
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 record_conf  | 
| 
286
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
287
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Record a hashref or object to program_conf.  | 
| 
288
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
289
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     $stopwatch->record_conf( $opt );  | 
| 
290
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
291
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 block_message  | 
| 
292
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
293
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Print a blocked message  | 
| 
294
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
295
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     $stopwatch->block_message( $message, $with_duration );  | 
| 
296
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
297
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 start_message  | 
| 
298
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
299
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Print a starting message  | 
| 
300
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
301
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     $stopwatch->start_message( $message, $embed_in_divider );  | 
| 
302
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
303
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 end_message  | 
| 
304
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
305
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Print a ending message  | 
| 
306
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
307
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     $stopwatch->end_message( $message );  | 
| 
308
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
309
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head1 AUTHOR  | 
| 
310
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
311
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Qiang Wang <wang-q@outlook.com>  | 
| 
312
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
313
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head1 COPYRIGHT AND LICENSE  | 
| 
314
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
315
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 This software is copyright (c) 2008- by Qiang Wang.  | 
| 
316
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
317
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 This is free software; you can redistribute it and/or modify it under  | 
| 
318
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 the same terms as the Perl 5 programming language system itself.  | 
| 
319
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
320
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =cut  |