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use strict; |
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use vars qw ($VERSION); |
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#use warnings; |
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############################################################################### |
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# NNFlex - Neural Network (flexible) - a heavily custom NN simulator |
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# |
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# Sept 2004 - CW Colbourn |
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# |
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# This was developed from the abortive nnseq package originally intended |
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# for real time neural networks. |
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# The basis of the approach for this version is a very flexible, modular |
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# set of packages. This package constitutes the base, allowing the modeller |
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# to create meshes, apply input, and read output ONLY! |
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# |
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# Separate modules are to be written to perform feedback adjustments, |
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# various activation functions, text/gui front ends etc |
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# |
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############################################################################### |
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# Version Control |
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# =============== |
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# |
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# 0.1 20040905 CColbourn New module |
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# added NNFlex::datasets |
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# |
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# 0.11 20050113 CColbourn Added NNFlex::lesion |
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# Improved Draw |
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# added NNFlex::datasets |
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# |
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# 0.12 20050116 CColbourn Fixed reinforce.pm bug |
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# Added call into datasets |
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# in ::run to offer alternative |
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# syntax |
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# |
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# 0.13 20050121 CColbourn Created momentum learning module |
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# |
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# 0.14 20050201 CColbourn Abstracted derivatiive of activation |
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# function into a separate function call |
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# instead of hardcoded 1-y*y in backprop |
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# tanh, linear & momentum |
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# |
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# 0.15 20050206 CColbourn Fixed a bug in feedforward.pm. Stopped |
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# calling dbug unless scalar debug > 0 |
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43
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# in a lot of calls |
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# |
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# 0.16 20050218 CColbourn Changed from a hash of weights to an |
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# array of weights, to make it easier |
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47
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# to adapt the code to PDL |
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48
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# |
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# 0.17 20050302 CColbourn Changed input params to ::output to |
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# be param=>parameter not anon hash |
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# Included round parameter in output |
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# |
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# 0.20 20050307 CColbourn Modified for inheritance to simplify |
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# future network types |
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# |
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# 0.21 20050316 CColbourn Rewrote perldocs, implemented fahlman |
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57
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# constant, chopped out old legacy stuff |
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58
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# put math functions in mathlib, etc etc |
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# |
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# 0.22 20050317 CColbourn Implemented ::connect method |
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61
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# |
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62
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# 0.23 20050424 CColbourn Included Hopfield module in dist. |
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63
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# |
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64
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# 0.24 20050620 CColbourn Corrected a bug in the bias weight |
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65
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# calculation |
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66
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# |
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# |
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68
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############################################################################### |
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69
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# ToDo |
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70
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# ==== |
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71
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# |
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72
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# Modify init to allow recurrent layer/node connections |
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73
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# write cmd & gui frontends |
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74
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# Speed the bugger up! |
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75
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# |
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76
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# Odd thought - careful coding of a network would allow grafting of |
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77
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# two different network types or learning algorithms, like an effectve |
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78
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# single network with 2 layers unsupervised and 2 layers supervised |
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79
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# |
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80
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# Clean up the perldocs |
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81
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# |
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82
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############################################################################### |
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83
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$VERSION = "0.24"; |
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84
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85
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86
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############################################################################### |
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87
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my @DEBUG; # a single, solitary, shameful global variable. Couldn't |
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88
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#avoid it really. It allows correct control of debug |
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89
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#information before the $network object is created |
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90
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# (in ::layer->new & ::node->new for example). |
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91
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92
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93
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############################################################################### |
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94
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############################################################################### |
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95
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# package NNFlex |
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96
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############################################################################### |
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97
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############################################################################### |
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98
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package AI::NNFlex; |
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99
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5
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5
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3167
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use AI::NNFlex::Mathlib; |
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5
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11
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5
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162
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100
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5
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5
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31
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use base qw(AI::NNFlex::Mathlib); |
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5
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8
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5
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33064
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101
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102
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103
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104
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105
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106
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############################################################################### |
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107
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# AI::NNFlex::new |
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108
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############################################################################### |
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109
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sub new |
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110
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{ |
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111
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5
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5
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1
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183
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my $class = shift; |
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112
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5
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13
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my $network={}; |
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113
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5
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17
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bless $network,$class; |
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114
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115
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# intercept the new style 'empty network' constructor call |
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116
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# Maybe I should deprecate the old one, but its convenient, provided you |
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117
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# can follow the mess of hashes |
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118
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119
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5
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50
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101
|
if (!grep /HASH/,@_) |
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120
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{ |
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121
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5
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38
|
my %config = @_; |
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122
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5
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25
|
foreach (keys %config) |
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123
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{ |
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124
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23
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88
|
$network->{$_} = $config{$_}; |
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125
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} |
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126
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127
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5
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37
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return $network; |
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128
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} |
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129
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130
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# Otherwise, continue assuming that the whole network is defined in |
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131
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# a pair of anonymous hashes |
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132
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133
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134
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135
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0
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0
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my $params = shift; |
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136
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0
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0
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my $netParams = shift; |
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137
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0
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0
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my @layers; |
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138
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0
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0
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dbug ($netParams,"Entered AI::NNFlex::new with params $params $netParams",2); |
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139
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140
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141
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# clean up case & spaces in layer defs from pre 0.14 constructor calls: |
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142
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0
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0
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my $cleanParams; |
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143
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0
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0
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foreach my $layer(@{$params}) |
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0
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0
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144
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{ |
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145
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0
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0
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my %cleanLayer; |
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146
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0
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0
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foreach (keys %$layer) |
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147
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{ |
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148
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0
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0
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my $key = lc($_); |
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149
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0
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0
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$key =~ s/\s//g; |
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150
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0
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0
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$cleanLayer{$key} = $$layer{$_}; |
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151
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} |
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152
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0
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0
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push @$cleanParams,\%cleanLayer; |
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153
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} |
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154
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155
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156
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157
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# Network wide parameters (e.g. random weights) |
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158
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0
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0
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foreach (keys %$netParams) |
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159
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{ |
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160
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0
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0
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my $key = lc($_); |
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161
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0
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0
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$key =~ s/\s//g; # up to 0.14 we had params with spaces in, now deprecated |
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162
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0
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0
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$network->{$key} = ${$netParams}{$_}; |
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0
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0
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163
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} |
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164
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165
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0
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0
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0
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if( $network->{'debug'}) |
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166
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{ |
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167
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0
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0
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@DEBUG = @{$network->{'debug'}}; |
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0
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0
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168
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} |
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169
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170
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# build the network |
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171
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0
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0
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foreach (@$cleanParams) |
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172
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{ |
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173
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0
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0
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0
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if (!($$_{'nodes'})){next} |
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0
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0
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174
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0
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0
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my %layer = %{$_}; |
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0
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0
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175
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0
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0
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push @layers,AI::NNFlex::layer->new(\%layer); |
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176
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} |
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177
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0
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0
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$$network{'layers'} = \@layers; |
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178
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179
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180
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181
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182
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183
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0
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0
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$network->init; |
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184
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0
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0
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return $network; |
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185
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} |
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186
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187
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188
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189
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190
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############################################################################### |
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191
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# AI::NNFlex::add_layer |
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192
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############################################################################### |
|
193
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# |
|
194
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# Adds a layer of given node definitions to the $network object |
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195
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# |
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196
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# syntax |
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197
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# |
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198
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# $network->add_layer(nodes=>4,activationfunction=>tanh); |
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199
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# |
|
200
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# returns bool success or failure |
|
201
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# |
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202
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############################################################################### |
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203
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|
204
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sub add_layer |
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205
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{ |
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206
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8
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8
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1
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2419
|
my $network = shift; |
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207
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208
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8
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66
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my %config = @_; |
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209
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210
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8
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65
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my $layer = AI::NNFlex::layer->new(\%config); |
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211
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212
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8
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50
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28
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if ($layer) |
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213
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{ |
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214
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8
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13
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push @{$network->{'layers'}},$layer; |
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8
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36
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215
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8
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36
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return 1; |
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216
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} |
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217
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else |
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218
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{ |
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0
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0
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return 0; |
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220
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} |
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221
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} |
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224
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############################################################################### |
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225
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# AI::NNFlex::output |
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226
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############################################################################### |
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sub output |
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{ |
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35
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35
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0
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64
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my $network = shift; |
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230
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35
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50
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my %params = @_; |
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231
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232
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35
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36
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my $finalLayer = ${$$network{'layers'}}[-1]; |
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35
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64
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233
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35
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35
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my $outputLayer; |
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35
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50
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70
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if (defined $params{'layer'}) |
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{ |
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0
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0
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$outputLayer = ${$$network{'layers'}}[$params{'layer'}] |
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0
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239
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} |
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else |
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241
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{ |
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35
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41
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$outputLayer = $finalLayer |
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243
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} |
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244
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245
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35
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64
|
my $output = AI::NNFlex::layer::layer_output($outputLayer); |
|
246
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247
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248
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# Round outputs if required |
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249
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35
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50
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83
|
if ($network->{'round'}) |
|
250
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{ |
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251
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0
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0
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foreach (@$output) |
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252
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{ |
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253
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0
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0
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0
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if ($_ > 0.5) |
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0
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254
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{ |
|
255
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0
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0
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$_ = 1; |
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256
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} |
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257
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elsif ($_ < -0.5) |
|
258
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{ |
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259
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0
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0
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$_=-1; |
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260
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} |
|
261
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else |
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262
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{ |
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263
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0
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0
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$_=0; |
|
264
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} |
|
265
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} |
|
266
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} |
|
267
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268
|
35
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|
129
|
return $output; |
|
269
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} |
|
270
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271
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################################################################################ |
|
272
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|
# sub init |
|
273
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|
################################################################################ |
|
274
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sub init |
|
275
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{ |
|
276
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|
277
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|
|
#Revised version of init for NNFlex |
|
278
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|
279
|
4
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4
|
1
|
511
|
my $network = shift; |
|
280
|
4
|
|
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|
|
8
|
my @layers = @{$network->{'layers'}}; |
|
|
4
|
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|
15
|
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|
281
|
|
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|
282
|
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|
|
|
# if network debug state not set, set it to null |
|
283
|
4
|
50
|
|
|
|
32
|
if (!$network->{'debug'}) |
|
284
|
|
|
|
|
|
|
{ |
|
285
|
0
|
|
|
|
|
0
|
$network->{'debug'} = []; |
|
286
|
|
|
|
|
|
|
} |
|
287
|
4
|
|
|
|
|
10
|
my @debug = @{$network->{'debug'}}; |
|
|
4
|
|
|
|
|
11
|
|
|
288
|
|
|
|
|
|
|
|
|
289
|
|
|
|
|
|
|
|
|
290
|
|
|
|
|
|
|
# implement the bias node |
|
291
|
4
|
50
|
|
|
|
21
|
if ($network->{'bias'}) |
|
292
|
|
|
|
|
|
|
{ |
|
293
|
4
|
|
|
|
|
38
|
my $biasNode = AI::NNFlex::node->new({'activation function'=>'linear'}); |
|
294
|
4
|
|
|
|
|
19
|
$$network{'biasnode'} = $biasNode; |
|
295
|
4
|
|
|
|
|
10
|
$$network{'biasnode'}->{'activation'} = 1; |
|
296
|
4
|
|
|
|
|
14
|
$$network{'biasnode'}->{'nodeid'} = "bias"; |
|
297
|
|
|
|
|
|
|
} |
|
298
|
|
|
|
|
|
|
|
|
299
|
4
|
|
|
|
|
8
|
my $nodeid = 1; |
|
300
|
4
|
|
|
|
|
8
|
my $currentLayer=0; |
|
301
|
|
|
|
|
|
|
# foreach layer, we need to examine each node |
|
302
|
4
|
|
|
|
|
12
|
foreach my $layer (@layers) |
|
303
|
|
|
|
|
|
|
{ |
|
304
|
|
|
|
|
|
|
# Foreach node we need to make connections east and west |
|
305
|
6
|
|
|
|
|
9
|
foreach my $node (@{$layer->{'nodes'}}) |
|
|
6
|
|
|
|
|
16
|
|
|
306
|
|
|
|
|
|
|
{ |
|
307
|
12
|
|
|
|
|
28
|
$node->{'nodeid'} = $nodeid; |
|
308
|
|
|
|
|
|
|
# only initialise to the west if layer > 0 |
|
309
|
12
|
100
|
|
|
|
33
|
if ($currentLayer > 0 ) |
|
310
|
|
|
|
|
|
|
{ |
|
311
|
4
|
|
|
|
|
11
|
foreach my $westNodes (@{$network->{'layers'}->[$currentLayer -1]->{'nodes'}}) |
|
|
4
|
|
|
|
|
12
|
|
|
312
|
|
|
|
|
|
|
{ |
|
313
|
8
|
|
|
|
|
10
|
foreach my $connectionFromWest (@{$westNodes->{'connectedNodesEast'}->{'nodes'}}) |
|
|
8
|
|
|
|
|
17
|
|
|
314
|
|
|
|
|
|
|
{ |
|
315
|
16
|
100
|
|
|
|
47
|
if ($connectionFromWest eq $node) |
|
316
|
|
|
|
|
|
|
{ |
|
317
|
8
|
|
|
|
|
14
|
my $weight = $network->calcweight; |
|
318
|
|
|
|
|
|
|
|
|
319
|
8
|
|
|
|
|
8
|
push @{$node->{'connectedNodesWest'}->{'nodes'}},$westNodes; |
|
|
8
|
|
|
|
|
25
|
|
|
320
|
8
|
|
|
|
|
9
|
push @{$node->{'connectedNodesWest'}->{'weights'}},$weight; |
|
|
8
|
|
|
|
|
13
|
|
|
321
|
8
|
50
|
|
|
|
31
|
if (scalar @debug > 0) |
|
|
0
|
|
|
|
|
0
|
|
|
322
|
|
|
|
|
|
|
{$network->dbug ("West to east Connection - ".$westNodes->{'nodeid'}." to ".$node->{'nodeid'},2);} |
|
323
|
|
|
|
|
|
|
} |
|
324
|
|
|
|
|
|
|
} |
|
325
|
|
|
|
|
|
|
} |
|
326
|
|
|
|
|
|
|
} |
|
327
|
|
|
|
|
|
|
|
|
328
|
|
|
|
|
|
|
# Now initialise connections to the east (if not last layer) |
|
329
|
12
|
100
|
|
|
|
39
|
if ($currentLayer < (scalar @layers)-1) |
|
330
|
|
|
|
|
|
|
{ |
|
331
|
4
|
|
|
|
|
6
|
foreach my $eastNodes (@{$network->{'layers'}->[$currentLayer+1]->{'nodes'}}) |
|
|
4
|
|
|
|
|
15
|
|
|
332
|
|
|
|
|
|
|
{ |
|
333
|
8
|
50
|
33
|
|
|
27
|
if (!$network->{'randomconnections'} || $network->{'randomconnections'} > rand(1)) |
|
334
|
|
|
|
|
|
|
{ |
|
335
|
8
|
|
|
|
|
30
|
my $weight = $network->calcweight; |
|
336
|
8
|
|
|
|
|
11
|
push @{$node->{'connectedNodesEast'}->{'nodes'}},$eastNodes; |
|
|
8
|
|
|
|
|
21
|
|
|
337
|
8
|
|
|
|
|
8
|
push @{$node->{'connectedNodesEast'}->{'weights'}}, $weight; |
|
|
8
|
|
|
|
|
17
|
|
|
338
|
8
|
50
|
|
|
|
26
|
if (scalar @debug > 0) |
|
|
0
|
|
|
|
|
0
|
|
|
339
|
|
|
|
|
|
|
{$network->dbug ("East to west Connection ".$node->{'nodeid'}." to ".$eastNodes->{'nodeid'},2);} |
|
340
|
|
|
|
|
|
|
} |
|
341
|
|
|
|
|
|
|
} |
|
342
|
|
|
|
|
|
|
} |
|
343
|
12
|
|
|
|
|
589
|
$nodeid++; |
|
344
|
|
|
|
|
|
|
} |
|
345
|
6
|
|
|
|
|
15
|
$currentLayer++; |
|
346
|
|
|
|
|
|
|
} |
|
347
|
|
|
|
|
|
|
|
|
348
|
|
|
|
|
|
|
|
|
349
|
|
|
|
|
|
|
# add bias node to westerly connections |
|
350
|
4
|
50
|
|
|
|
19
|
if ($network->{'bias'}) |
|
351
|
|
|
|
|
|
|
{ |
|
352
|
4
|
|
|
|
|
8
|
foreach my $layer (@{$network->{'layers'}}) |
|
|
4
|
|
|
|
|
14
|
|
|
353
|
|
|
|
|
|
|
{ |
|
354
|
6
|
|
|
|
|
10
|
foreach my $node (@{$layer->{'nodes'}}) |
|
|
6
|
|
|
|
|
21
|
|
|
355
|
|
|
|
|
|
|
{ |
|
356
|
12
|
|
|
|
|
543
|
push @{$node->{'connectedNodesWest'}->{'nodes'}},$network->{'biasnode'}; |
|
|
12
|
|
|
|
|
37
|
|
|
357
|
12
|
|
|
|
|
46
|
my $weight = $network->calcweight; |
|
358
|
|
|
|
|
|
|
|
|
359
|
12
|
|
|
|
|
16
|
push @{$node->{'connectedNodesWest'}->{'weights'}},$weight; |
|
|
12
|
|
|
|
|
608
|
|
|
360
|
12
|
50
|
|
|
|
49
|
if (scalar @debug > 0) |
|
|
0
|
|
|
|
|
0
|
|
|
361
|
|
|
|
|
|
|
{$network->dbug ("West to east Connection - bias to ".$node->{'nodeid'}." weight = $weight",2);} |
|
362
|
|
|
|
|
|
|
} |
|
363
|
|
|
|
|
|
|
} |
|
364
|
|
|
|
|
|
|
} |
|
365
|
|
|
|
|
|
|
|
|
366
|
|
|
|
|
|
|
|
|
367
|
|
|
|
|
|
|
|
|
368
|
4
|
|
|
|
|
17
|
return 1; # return success if we get to here |
|
369
|
|
|
|
|
|
|
|
|
370
|
|
|
|
|
|
|
|
|
371
|
|
|
|
|
|
|
} |
|
372
|
|
|
|
|
|
|
|
|
373
|
|
|
|
|
|
|
############################################################################### |
|
374
|
|
|
|
|
|
|
# sub $network->dbug |
|
375
|
|
|
|
|
|
|
############################################################################### |
|
376
|
|
|
|
|
|
|
sub dbug |
|
377
|
|
|
|
|
|
|
{ |
|
378
|
70
|
|
|
70
|
0
|
86
|
my $network = shift; |
|
379
|
70
|
|
|
|
|
67
|
my $message = shift; |
|
380
|
70
|
|
|
|
|
75
|
my $level = shift; |
|
381
|
|
|
|
|
|
|
|
|
382
|
|
|
|
|
|
|
|
|
383
|
70
|
|
|
|
|
97
|
my @DEBUGLEVELS; |
|
384
|
|
|
|
|
|
|
# cover for debug calls before the network is created |
|
385
|
70
|
100
|
|
|
|
135
|
if (!$network->{'debug'}) |
|
386
|
|
|
|
|
|
|
{ |
|
387
|
28
|
|
|
|
|
50
|
@DEBUGLEVELS=@DEBUG; |
|
388
|
|
|
|
|
|
|
} |
|
389
|
|
|
|
|
|
|
else |
|
390
|
|
|
|
|
|
|
{ |
|
391
|
42
|
|
|
|
|
37
|
@DEBUGLEVELS = @{$network->{'debug'}}; |
|
|
42
|
|
|
|
|
74
|
|
|
392
|
|
|
|
|
|
|
} |
|
393
|
|
|
|
|
|
|
|
|
394
|
|
|
|
|
|
|
|
|
395
|
|
|
|
|
|
|
# 0 is error so ALWAYS display |
|
396
|
70
|
50
|
|
|
|
152
|
if (!(grep /0/,@DEBUGLEVELS)){push @DEBUGLEVELS,0} |
|
|
70
|
|
|
|
|
91
|
|
|
397
|
|
|
|
|
|
|
|
|
398
|
70
|
|
|
|
|
98
|
foreach (@DEBUGLEVELS) |
|
399
|
|
|
|
|
|
|
{ |
|
400
|
|
|
|
|
|
|
|
|
401
|
70
|
50
|
|
|
|
308
|
if ($level == $_) |
|
402
|
|
|
|
|
|
|
{ |
|
403
|
0
|
|
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|
|
0
|
print "$message\n"; |
|
404
|
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|
|
} |
|
405
|
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|
|
} |
|
406
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} |
|
407
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408
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|
409
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|
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############################################################################### |
|
410
|
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|
|
# AI::NNFlex::dump_state |
|
411
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|
|
############################################################################### |
|
412
|
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|
|
sub dump_state |
|
413
|
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|
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{ |
|
414
|
1
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1
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0
|
67
|
my $network = shift; |
|
415
|
1
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4
|
my %params =@_; |
|
416
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417
|
1
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1
|
my $filename = $params{'filename'}; |
|
418
|
1
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2
|
my $activations = $params{'activations'}; |
|
419
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420
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421
|
1
|
50
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|
125
|
open (OFILE,">$filename") or return "Can't create weights file $filename"; |
|
422
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|
423
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424
|
1
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3
|
foreach my $layer (@{$network->{'layers'}}) |
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1
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3
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|
425
|
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{ |
|
426
|
2
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2
|
foreach my $node (@{$layer->{'nodes'}}) |
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2
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5
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427
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{ |
|
428
|
4
|
50
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|
7
|
if ($activations) |
|
429
|
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{ |
|
430
|
4
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|
32
|
print OFILE $node->{'nodeid'}." activation = ".$node->{'activation'}."\n"; |
|
431
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|
} |
|
432
|
4
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5
|
my $connectedNodeCounter=0; |
|
433
|
4
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4
|
foreach my $connectedNode (@{$node->{'connectedNodesEast'}->{'nodes'}}) |
|
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4
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8
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|
434
|
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|
|
{ |
|
435
|
9
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|
9
|
my $weight = ${$node->{'connectedNodesEast'}->{'weights'}}[$connectedNodeCounter]; |
|
|
9
|
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13
|
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|
436
|
9
|
|
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|
|
79
|
print OFILE $node->{'nodeid'}." <- ".$connectedNode->{'nodeid'}." = ".$weight."\n"; |
|
437
|
9
|
|
|
|
|
15
|
$connectedNodeCounter++; |
|
438
|
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|
|
} |
|
439
|
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|
440
|
4
|
50
|
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|
11
|
if ($node->{'connectedNodesWest'}) |
|
441
|
|
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|
|
{ |
|
442
|
4
|
|
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|
3
|
my $connectedNodeCounter=0; |
|
443
|
4
|
|
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|
|
5
|
foreach my $connectedNode (@{$node->{'connectedNodesWest'}->{'nodes'}}) |
|
|
4
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|
8
|
|
|
444
|
|
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|
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|
|
{ |
|
445
|
|
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|
|
|
#FIXME - a more easily read format would be connectedNode first in the file |
|
446
|
13
|
|
|
|
|
9
|
my $weight = ${$node->{'connectedNodesWest'}->{'weights'}}[$connectedNodeCounter]; |
|
|
13
|
|
|
|
|
21
|
|
|
447
|
13
|
|
|
|
|
47
|
print OFILE $node->{'nodeid'}." -> ".$connectedNode->{'nodeid'}." = ".$weight."\n"; |
|
448
|
|
|
|
|
|
|
} |
|
449
|
|
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|
|
} |
|
450
|
|
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|
|
} |
|
451
|
|
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|
|
} |
|
452
|
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|
453
|
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|
454
|
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|
|
455
|
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|
456
|
1
|
|
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|
|
58
|
close OFILE; |
|
457
|
|
|
|
|
|
|
} |
|
458
|
|
|
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|
|
|
|
|
459
|
|
|
|
|
|
|
############################################################################### |
|
460
|
|
|
|
|
|
|
# sub load_state |
|
461
|
|
|
|
|
|
|
############################################################################### |
|
462
|
|
|
|
|
|
|
sub load_state |
|
463
|
|
|
|
|
|
|
{ |
|
464
|
1
|
|
|
1
|
0
|
55
|
my $network = shift; |
|
465
|
|
|
|
|
|
|
|
|
466
|
1
|
|
|
|
|
3
|
my %config = @_; |
|
467
|
|
|
|
|
|
|
|
|
468
|
1
|
|
|
|
|
2
|
my $filename = $config{'filename'}; |
|
469
|
|
|
|
|
|
|
|
|
470
|
1
|
50
|
|
|
|
26
|
open (IFILE,$filename) or return "Error: unable to open $filename because $!"; |
|
471
|
|
|
|
|
|
|
|
|
472
|
|
|
|
|
|
|
# we have to build a map of nodeids to objects |
|
473
|
1
|
|
|
|
|
2
|
my %nodeMap; |
|
474
|
1
|
|
|
|
|
1
|
foreach my $layer (@{$network->{'layers'}}) |
|
|
1
|
|
|
|
|
3
|
|
|
475
|
|
|
|
|
|
|
{ |
|
476
|
2
|
|
|
|
|
2
|
foreach my $node (@{$layer->{'nodes'}}) |
|
|
2
|
|
|
|
|
4
|
|
|
477
|
|
|
|
|
|
|
{ |
|
478
|
4
|
|
|
|
|
10
|
$nodeMap{$node->{'nodeid'}} = $node; |
|
479
|
|
|
|
|
|
|
} |
|
480
|
|
|
|
|
|
|
} |
|
481
|
|
|
|
|
|
|
|
|
482
|
|
|
|
|
|
|
# Add the bias node into the map |
|
483
|
1
|
50
|
|
|
|
3
|
if ($network->{'bias'}) |
|
484
|
|
|
|
|
|
|
{ |
|
485
|
1
|
|
|
|
|
2
|
$nodeMap{'bias'} = $network->{'biasnode'}; |
|
486
|
|
|
|
|
|
|
} |
|
487
|
|
|
|
|
|
|
|
|
488
|
|
|
|
|
|
|
|
|
489
|
1
|
|
|
|
|
1
|
my %stateFromFile; |
|
490
|
|
|
|
|
|
|
|
|
491
|
1
|
|
|
|
|
22
|
while () |
|
492
|
|
|
|
|
|
|
{ |
|
493
|
26
|
|
|
|
|
27
|
chomp $_; |
|
494
|
26
|
|
|
|
|
21
|
my ($activation,$nodeid,$destNode,$weight); |
|
495
|
|
|
|
|
|
|
|
|
496
|
26
|
100
|
|
|
|
128
|
if ($_ =~ /(.*) activation = (.*)/) |
|
|
|
100
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
497
|
|
|
|
|
|
|
{ |
|
498
|
4
|
|
|
|
|
7
|
$nodeid = $1; |
|
499
|
4
|
|
|
|
|
5
|
$activation = $2; |
|
500
|
4
|
|
|
|
|
9
|
$stateFromFile{$nodeid}->{'activation'} = $activation; |
|
501
|
4
|
|
|
|
|
11
|
$network->dbug("Loading $nodeid = $activation",2); |
|
502
|
|
|
|
|
|
|
} |
|
503
|
|
|
|
|
|
|
elsif ($_ =~ /(.*) -> (.*) = (.*)/) |
|
504
|
|
|
|
|
|
|
{ |
|
505
|
13
|
|
|
|
|
16
|
$nodeid = $1; |
|
506
|
13
|
|
|
|
|
14
|
$destNode = $2; |
|
507
|
13
|
|
|
|
|
17
|
$weight = $3; |
|
508
|
13
|
|
|
|
|
34
|
$network->dbug("Loading $nodeid -> $destNode = $weight",2); |
|
509
|
13
|
|
|
|
|
16
|
push @{$stateFromFile{$nodeid}->{'connectedNodesWest'}->{'weights'}},$weight; |
|
|
13
|
|
|
|
|
32
|
|
|
510
|
13
|
|
|
|
|
13
|
push @{$stateFromFile{$nodeid}->{'connectedNodesWest'}->{'nodes'}},$nodeMap{$destNode}; |
|
|
13
|
|
|
|
|
61
|
|
|
511
|
|
|
|
|
|
|
} |
|
512
|
|
|
|
|
|
|
elsif ($_ =~ /(.*) <- (.*) = (.*)/) |
|
513
|
|
|
|
|
|
|
{ |
|
514
|
9
|
|
|
|
|
13
|
$nodeid = $1; |
|
515
|
9
|
|
|
|
|
9
|
$destNode = $2; |
|
516
|
9
|
|
|
|
|
15
|
$weight = $3; |
|
517
|
9
|
|
|
|
|
5
|
push @{$stateFromFile{$nodeid}->{'connectedNodesEast'}->{'weights'}},$weight; |
|
|
9
|
|
|
|
|
23
|
|
|
518
|
9
|
|
|
|
|
8
|
push @{$stateFromFile{$nodeid}->{'connectedNodesEast'}->{'nodes'}},$nodeMap{$destNode}; |
|
|
9
|
|
|
|
|
23
|
|
|
519
|
9
|
|
|
|
|
28
|
$network->dbug("Loading $nodeid <- $destNode = $weight",2); |
|
520
|
|
|
|
|
|
|
} |
|
521
|
|
|
|
|
|
|
} |
|
522
|
|
|
|
|
|
|
|
|
523
|
1
|
|
|
|
|
9
|
close IFILE; |
|
524
|
|
|
|
|
|
|
|
|
525
|
|
|
|
|
|
|
|
|
526
|
|
|
|
|
|
|
|
|
527
|
|
|
|
|
|
|
|
|
528
|
1
|
|
|
|
|
1
|
my $nodeCounter=1; |
|
529
|
|
|
|
|
|
|
|
|
530
|
1
|
|
|
|
|
2
|
foreach my $layer (@{$network->{'layers'}}) |
|
|
1
|
|
|
|
|
2
|
|
|
531
|
|
|
|
|
|
|
{ |
|
532
|
2
|
|
|
|
|
2
|
foreach my $node (@{$layer->{'nodes'}}) |
|
|
2
|
|
|
|
|
3
|
|
|
533
|
|
|
|
|
|
|
{ |
|
534
|
4
|
|
|
|
|
8
|
$node->{'activation'} = $stateFromFile{$nodeCounter}->{'activation'}; |
|
535
|
4
|
|
|
|
|
5
|
$node->{'connectedNodesEast'} = $stateFromFile{$nodeCounter}->{'connectedNodesEast'}; |
|
536
|
4
|
|
|
|
|
9
|
$node->{'connectedNodesWest'} = $stateFromFile{$nodeCounter}->{'connectedNodesWest'}; |
|
537
|
4
|
|
|
|
|
11
|
$nodeCounter++; |
|
538
|
|
|
|
|
|
|
} |
|
539
|
|
|
|
|
|
|
} |
|
540
|
1
|
|
|
|
|
6
|
return 1; |
|
541
|
|
|
|
|
|
|
} |
|
542
|
|
|
|
|
|
|
|
|
543
|
|
|
|
|
|
|
############################################################################## |
|
544
|
|
|
|
|
|
|
# sub lesion |
|
545
|
|
|
|
|
|
|
############################################################################## |
|
546
|
|
|
|
|
|
|
sub lesion |
|
547
|
|
|
|
|
|
|
{ |
|
548
|
|
|
|
|
|
|
|
|
549
|
0
|
|
|
0
|
1
|
0
|
my $network = shift; |
|
550
|
|
|
|
|
|
|
|
|
551
|
0
|
|
|
|
|
0
|
my %params = @_; |
|
552
|
0
|
|
|
|
|
0
|
my $return; |
|
553
|
0
|
|
|
|
|
0
|
$network->dbug("Entered AI::NNFlex::lesion with %params",2); |
|
554
|
|
|
|
|
|
|
|
|
555
|
0
|
|
|
|
|
0
|
my $nodeLesion = $params{'nodes'}; |
|
556
|
0
|
|
|
|
|
0
|
my $connectionLesion = $params{'connections'}; |
|
557
|
|
|
|
|
|
|
|
|
558
|
|
|
|
|
|
|
# go through the layers & node inactivating random nodes according |
|
559
|
|
|
|
|
|
|
# to probability |
|
560
|
|
|
|
|
|
|
|
|
561
|
0
|
|
|
|
|
0
|
foreach my $layer (@{$network->{'layers'}}) |
|
|
0
|
|
|
|
|
0
|
|
|
562
|
|
|
|
|
|
|
{ |
|
563
|
0
|
|
|
|
|
0
|
$return = $layer->lesion(%params); |
|
564
|
|
|
|
|
|
|
} |
|
565
|
|
|
|
|
|
|
|
|
566
|
0
|
|
|
|
|
0
|
return $return; |
|
567
|
|
|
|
|
|
|
|
|
568
|
|
|
|
|
|
|
} |
|
569
|
|
|
|
|
|
|
|
|
570
|
|
|
|
|
|
|
######################################################################## |
|
571
|
|
|
|
|
|
|
# AI::NNFlex::connect |
|
572
|
|
|
|
|
|
|
######################################################################## |
|
573
|
|
|
|
|
|
|
# |
|
574
|
|
|
|
|
|
|
# Joins layers or nodes together. |
|
575
|
|
|
|
|
|
|
# |
|
576
|
|
|
|
|
|
|
# takes fromlayer=>INDEX, tolayer=>INDEX or |
|
577
|
|
|
|
|
|
|
# fromnode=>[LAYER,NODE],tonode=>[LAYER,NODE] |
|
578
|
|
|
|
|
|
|
# |
|
579
|
|
|
|
|
|
|
# returns success or failure |
|
580
|
|
|
|
|
|
|
# |
|
581
|
|
|
|
|
|
|
# |
|
582
|
|
|
|
|
|
|
######################################################################### |
|
583
|
|
|
|
|
|
|
sub connect |
|
584
|
|
|
|
|
|
|
{ |
|
585
|
4
|
|
|
4
|
1
|
748
|
my $network = shift; |
|
586
|
4
|
|
|
|
|
14
|
my %params = @_; |
|
587
|
4
|
|
|
|
|
6
|
my $result = 0; |
|
588
|
|
|
|
|
|
|
|
|
589
|
4
|
100
|
|
|
|
18
|
if ($params{'fromnode'}) |
|
|
|
50
|
|
|
|
|
|
|
590
|
|
|
|
|
|
|
{ |
|
591
|
2
|
|
|
|
|
18
|
$result = $network->connectnodes(%params); |
|
592
|
|
|
|
|
|
|
} |
|
593
|
|
|
|
|
|
|
elsif ($params{'fromlayer'}) |
|
594
|
|
|
|
|
|
|
{ |
|
595
|
2
|
|
|
|
|
22
|
$result = $network->connectlayers(%params); |
|
596
|
|
|
|
|
|
|
} |
|
597
|
4
|
|
|
|
|
13
|
return $result; |
|
598
|
|
|
|
|
|
|
|
|
599
|
|
|
|
|
|
|
} |
|
600
|
|
|
|
|
|
|
|
|
601
|
|
|
|
|
|
|
######################################################################## |
|
602
|
|
|
|
|
|
|
# AI::NNFlex::connectlayers |
|
603
|
|
|
|
|
|
|
######################################################################## |
|
604
|
|
|
|
|
|
|
sub connectlayers |
|
605
|
|
|
|
|
|
|
{ |
|
606
|
2
|
|
|
2
|
0
|
4
|
my $network=shift; |
|
607
|
2
|
|
|
|
|
6
|
my %params = @_; |
|
608
|
|
|
|
|
|
|
|
|
609
|
2
|
|
|
|
|
5
|
my $fromlayerindex = $params{'fromlayer'}; |
|
610
|
2
|
|
|
|
|
3
|
my $tolayerindex = $params{'tolayer'}; |
|
611
|
|
|
|
|
|
|
|
|
612
|
2
|
|
|
|
|
4
|
foreach my $node (@{$network->{'layers'}->[$tolayerindex]->{'nodes'}}) |
|
|
2
|
|
|
|
|
7
|
|
|
613
|
|
|
|
|
|
|
{ |
|
614
|
4
|
|
|
|
|
3
|
foreach my $connectedNode ( @{$network->{'layers'}->[$fromlayerindex]->{'nodes'}}) |
|
|
4
|
|
|
|
|
11
|
|
|
615
|
|
|
|
|
|
|
{ |
|
616
|
8
|
|
|
|
|
16
|
my $weight1 = $network->calcweight; |
|
617
|
8
|
|
|
|
|
15
|
my $weight2 = $network->calcweight; |
|
618
|
8
|
|
|
|
|
10
|
push @{$node->{'connectedNodesWest'}->{'nodes'}},$connectedNode; |
|
|
8
|
|
|
|
|
17
|
|
|
619
|
8
|
|
|
|
|
9
|
push @{$connectedNode->{'connectedNodesEast'}->{'nodes'}},$node; |
|
|
8
|
|
|
|
|
16
|
|
|
620
|
8
|
|
|
|
|
11
|
push @{$node->{'connectedNodesWest'}->{'weights'}},$weight1; |
|
|
8
|
|
|
|
|
15
|
|
|
621
|
8
|
|
|
|
|
8
|
push @{$connectedNode->{'connectedNodesEast'}->{'weights'}},$weight2; |
|
|
8
|
|
|
|
|
25
|
|
|
622
|
|
|
|
|
|
|
} |
|
623
|
|
|
|
|
|
|
} |
|
624
|
|
|
|
|
|
|
|
|
625
|
2
|
|
|
|
|
6
|
return 1; |
|
626
|
|
|
|
|
|
|
} |
|
627
|
|
|
|
|
|
|
|
|
628
|
|
|
|
|
|
|
############################################################## |
|
629
|
|
|
|
|
|
|
# sub AI::NNFlex::connectnodes |
|
630
|
|
|
|
|
|
|
############################################################## |
|
631
|
|
|
|
|
|
|
sub connectnodes |
|
632
|
|
|
|
|
|
|
{ |
|
633
|
2
|
|
|
2
|
0
|
4
|
my $network = shift; |
|
634
|
2
|
|
|
|
|
5
|
my %params = @_; |
|
635
|
|
|
|
|
|
|
|
|
636
|
2
|
|
|
|
|
8
|
$params{'tonode'} =~ s/\'//g; |
|
637
|
2
|
|
|
|
|
6
|
$params{'fromnode'} =~ s/\'//g; |
|
638
|
2
|
|
|
|
|
11
|
my @tonodeindex = split /,/,$params{'tonode'}; |
|
639
|
2
|
|
|
|
|
8
|
my @fromnodeindex = split /,/,$params{'fromnode'}; |
|
640
|
|
|
|
|
|
|
|
|
641
|
|
|
|
|
|
|
#make the connections |
|
642
|
2
|
|
|
|
|
8
|
my $node = $network->{'layers'}->[$tonodeindex[0]]->{'nodes'}->[$tonodeindex[1]]; |
|
643
|
2
|
|
|
|
|
19
|
my $connectedNode = $network->{'layers'}->[$fromnodeindex[0]]->{'nodes'}->[$fromnodeindex[1]]; |
|
644
|
|
|
|
|
|
|
|
|
645
|
2
|
|
|
|
|
6
|
my $weight1 = $network->calcweight; |
|
646
|
2
|
|
|
|
|
7
|
my $weight2 = $network->calcweight; |
|
647
|
|
|
|
|
|
|
|
|
648
|
2
|
|
|
|
|
32
|
push @{$node->{'connectedNodesWest'}->{'nodes'}},$connectedNode; |
|
|
2
|
|
|
|
|
9
|
|
|
649
|
2
|
|
|
|
|
3
|
push @{$connectedNode->{'connectedNodesEast'}->{'nodes'}},$node; |
|
|
2
|
|
|
|
|
5
|
|
|
650
|
2
|
|
|
|
|
4
|
push @{$node->{'connectedNodesWest'}->{'weights'}},$weight1; |
|
|
2
|
|
|
|
|
5
|
|
|
651
|
2
|
|
|
|
|
3
|
push @{$connectedNode->{'connectedNodesEast'}->{'weights'}},$weight2; |
|
|
2
|
|
|
|
|
5
|
|
|
652
|
|
|
|
|
|
|
|
|
653
|
|
|
|
|
|
|
|
|
654
|
2
|
|
|
|
|
7
|
return 1; |
|
655
|
|
|
|
|
|
|
} |
|
656
|
|
|
|
|
|
|
|
|
657
|
|
|
|
|
|
|
|
|
658
|
|
|
|
|
|
|
|
|
659
|
|
|
|
|
|
|
############################################################## |
|
660
|
|
|
|
|
|
|
# AI::NNFlex::calcweight |
|
661
|
|
|
|
|
|
|
############################################################## |
|
662
|
|
|
|
|
|
|
# |
|
663
|
|
|
|
|
|
|
# calculate an initial weight appropriate for the network |
|
664
|
|
|
|
|
|
|
# settings. |
|
665
|
|
|
|
|
|
|
# takes no parameters, returns weight |
|
666
|
|
|
|
|
|
|
############################################################## |
|
667
|
|
|
|
|
|
|
sub calcweight |
|
668
|
|
|
|
|
|
|
{ |
|
669
|
64
|
|
|
64
|
0
|
83
|
my $network= shift; |
|
670
|
64
|
|
|
|
|
68
|
my $weight; |
|
671
|
64
|
50
|
|
|
|
171
|
if ($network->{'fixedweights'}) |
|
|
|
100
|
|
|
|
|
|
|
672
|
|
|
|
|
|
|
{ |
|
673
|
0
|
|
|
|
|
0
|
$weight = $network->{'fixedweights'}; |
|
674
|
|
|
|
|
|
|
} |
|
675
|
|
|
|
|
|
|
elsif ($network->{'randomweights'}) |
|
676
|
|
|
|
|
|
|
{ |
|
677
|
48
|
|
|
|
|
307
|
$weight = (rand(2*$network->{'randomweights'}))-$network->{'randomweights'}; |
|
678
|
|
|
|
|
|
|
} |
|
679
|
|
|
|
|
|
|
else |
|
680
|
|
|
|
|
|
|
{ |
|
681
|
16
|
|
|
|
|
83
|
$weight = (rand(2))-1; |
|
682
|
|
|
|
|
|
|
} |
|
683
|
|
|
|
|
|
|
|
|
684
|
|
|
|
|
|
|
|
|
685
|
64
|
|
|
|
|
124
|
return $weight; |
|
686
|
|
|
|
|
|
|
} |
|
687
|
|
|
|
|
|
|
|
|
688
|
|
|
|
|
|
|
|
|
689
|
|
|
|
|
|
|
|
|
690
|
|
|
|
|
|
|
|
|
691
|
|
|
|
|
|
|
|
|
692
|
|
|
|
|
|
|
############################################################################### |
|
693
|
|
|
|
|
|
|
############################################################################### |
|
694
|
|
|
|
|
|
|
# Package AI::NNFlex::layer |
|
695
|
|
|
|
|
|
|
############################################################################### |
|
696
|
|
|
|
|
|
|
############################################################################### |
|
697
|
|
|
|
|
|
|
package AI::NNFlex::layer; |
|
698
|
|
|
|
|
|
|
|
|
699
|
|
|
|
|
|
|
|
|
700
|
|
|
|
|
|
|
############################################################################### |
|
701
|
|
|
|
|
|
|
# AI::NNFlex::layer::new |
|
702
|
|
|
|
|
|
|
############################################################################### |
|
703
|
|
|
|
|
|
|
sub new |
|
704
|
|
|
|
|
|
|
{ |
|
705
|
8
|
|
|
8
|
|
14
|
my $class = shift; |
|
706
|
8
|
|
|
|
|
15
|
my $params = shift; |
|
707
|
8
|
|
|
|
|
19
|
my $layer ={}; |
|
708
|
|
|
|
|
|
|
|
|
709
|
8
|
|
|
|
|
20
|
foreach (keys %{$params}) |
|
|
8
|
|
|
|
|
37
|
|
|
710
|
|
|
|
|
|
|
{ |
|
711
|
44
|
|
|
|
|
121
|
$$layer{$_} = $$params{$_} |
|
712
|
|
|
|
|
|
|
} |
|
713
|
8
|
|
|
|
|
30
|
bless $layer,$class; |
|
714
|
|
|
|
|
|
|
|
|
715
|
8
|
|
|
|
|
109
|
my $numNodes = $$params{'nodes'}; |
|
716
|
|
|
|
|
|
|
|
|
717
|
8
|
|
|
|
|
13
|
my @nodes; |
|
718
|
|
|
|
|
|
|
|
|
719
|
8
|
|
|
|
|
47
|
for (1..$numNodes) |
|
720
|
|
|
|
|
|
|
{ |
|
721
|
16
|
|
|
|
|
69
|
push @nodes, AI::NNFlex::node->new($params); |
|
722
|
|
|
|
|
|
|
} |
|
723
|
|
|
|
|
|
|
|
|
724
|
8
|
|
|
|
|
39
|
$$layer{'nodes'} = \@nodes; |
|
725
|
|
|
|
|
|
|
|
|
726
|
8
|
|
|
|
|
38
|
AI::NNFlex::dbug($params,"Created layer $layer",2); |
|
727
|
8
|
|
|
|
|
23
|
return $layer; |
|
728
|
|
|
|
|
|
|
} |
|
729
|
|
|
|
|
|
|
|
|
730
|
|
|
|
|
|
|
############################################################################### |
|
731
|
|
|
|
|
|
|
# AI::NNFlex::layer::layer_output |
|
732
|
|
|
|
|
|
|
############################################################################## |
|
733
|
|
|
|
|
|
|
sub layer_output |
|
734
|
|
|
|
|
|
|
{ |
|
735
|
35
|
|
|
35
|
|
47
|
my $layer = shift; |
|
736
|
35
|
|
|
|
|
38
|
my $params = shift; |
|
737
|
|
|
|
|
|
|
|
|
738
|
|
|
|
|
|
|
|
|
739
|
35
|
|
|
|
|
32
|
my @outputs; |
|
740
|
35
|
|
|
|
|
36
|
foreach my $node (@{$$layer{'nodes'}}) |
|
|
35
|
|
|
|
|
71
|
|
|
741
|
|
|
|
|
|
|
{ |
|
742
|
70
|
|
|
|
|
155
|
push @outputs,$$node{'activation'}; |
|
743
|
|
|
|
|
|
|
} |
|
744
|
|
|
|
|
|
|
|
|
745
|
35
|
|
|
|
|
85
|
return \@outputs; |
|
746
|
|
|
|
|
|
|
} |
|
747
|
|
|
|
|
|
|
|
|
748
|
|
|
|
|
|
|
|
|
749
|
|
|
|
|
|
|
|
|
750
|
|
|
|
|
|
|
############################################################################## |
|
751
|
|
|
|
|
|
|
# sub lesion |
|
752
|
|
|
|
|
|
|
############################################################################## |
|
753
|
|
|
|
|
|
|
sub lesion |
|
754
|
|
|
|
|
|
|
{ |
|
755
|
|
|
|
|
|
|
|
|
756
|
0
|
|
|
0
|
|
0
|
my $layer = shift; |
|
757
|
|
|
|
|
|
|
|
|
758
|
0
|
|
|
|
|
0
|
my %params = @_; |
|
759
|
0
|
|
|
|
|
0
|
my $return; |
|
760
|
|
|
|
|
|
|
|
|
761
|
|
|
|
|
|
|
|
|
762
|
0
|
|
|
|
|
0
|
my $nodeLesion = $params{'nodes'}; |
|
763
|
0
|
|
|
|
|
0
|
my $connectionLesion = $params{'connections'}; |
|
764
|
|
|
|
|
|
|
|
|
765
|
|
|
|
|
|
|
# go through the layers & node inactivating random nodes according |
|
766
|
|
|
|
|
|
|
# to probability |
|
767
|
|
|
|
|
|
|
|
|
768
|
0
|
|
|
|
|
0
|
foreach my $node (@{$layer->{'nodes'}}) |
|
|
0
|
|
|
|
|
0
|
|
|
769
|
|
|
|
|
|
|
{ |
|
770
|
0
|
|
|
|
|
0
|
$return = $node->lesion(%params); |
|
771
|
|
|
|
|
|
|
} |
|
772
|
|
|
|
|
|
|
|
|
773
|
0
|
|
|
|
|
0
|
return $return; |
|
774
|
|
|
|
|
|
|
|
|
775
|
|
|
|
|
|
|
} |
|
776
|
|
|
|
|
|
|
|
|
777
|
|
|
|
|
|
|
|
|
778
|
|
|
|
|
|
|
|
|
779
|
|
|
|
|
|
|
############################################################################### |
|
780
|
|
|
|
|
|
|
############################################################################### |
|
781
|
|
|
|
|
|
|
# package AI::NNFlex::node |
|
782
|
|
|
|
|
|
|
############################################################################### |
|
783
|
|
|
|
|
|
|
############################################################################### |
|
784
|
|
|
|
|
|
|
package AI::NNFlex::node; |
|
785
|
|
|
|
|
|
|
|
|
786
|
|
|
|
|
|
|
|
|
787
|
|
|
|
|
|
|
############################################################################### |
|
788
|
|
|
|
|
|
|
# AI::NNFlex::node::new |
|
789
|
|
|
|
|
|
|
############################################################################### |
|
790
|
|
|
|
|
|
|
sub new |
|
791
|
|
|
|
|
|
|
{ |
|
792
|
20
|
|
|
20
|
|
32
|
my $class = shift; |
|
793
|
20
|
|
|
|
|
27
|
my $params = shift; |
|
794
|
20
|
|
|
|
|
32
|
my $node = {}; |
|
795
|
|
|
|
|
|
|
|
|
796
|
20
|
|
|
|
|
30
|
foreach (keys %{$params}) |
|
|
20
|
|
|
|
|
59
|
|
|
797
|
|
|
|
|
|
|
{ |
|
798
|
92
|
|
|
|
|
208
|
$$node{$_} = $$params{$_} |
|
799
|
|
|
|
|
|
|
} |
|
800
|
|
|
|
|
|
|
|
|
801
|
20
|
50
|
|
|
|
78
|
if ($$params{'randomactivation'}) |
|
802
|
|
|
|
|
|
|
{ |
|
803
|
0
|
|
|
|
|
0
|
$$node{'activation'} = |
|
804
|
|
|
|
|
|
|
rand($$params{'random'}); |
|
805
|
0
|
|
|
|
|
0
|
AI::NNFlex::dbug($params,"Randomly activated at ".$$node{'activation'},2); |
|
806
|
|
|
|
|
|
|
} |
|
807
|
|
|
|
|
|
|
else |
|
808
|
|
|
|
|
|
|
{ |
|
809
|
20
|
|
|
|
|
59
|
$$node{'activation'} = 0; |
|
810
|
|
|
|
|
|
|
} |
|
811
|
20
|
|
|
|
|
61
|
$$node{'active'} = 1; |
|
812
|
|
|
|
|
|
|
|
|
813
|
20
|
|
|
|
|
50
|
$$node{'error'} = 0; |
|
814
|
|
|
|
|
|
|
|
|
815
|
20
|
|
|
|
|
57
|
bless $node,$class; |
|
816
|
20
|
|
|
|
|
131
|
AI::NNFlex::dbug($params,"Created node $node",2); |
|
817
|
20
|
|
|
|
|
63
|
return $node; |
|
818
|
|
|
|
|
|
|
} |
|
819
|
|
|
|
|
|
|
|
|
820
|
|
|
|
|
|
|
############################################################################## |
|
821
|
|
|
|
|
|
|
# sub lesion |
|
822
|
|
|
|
|
|
|
############################################################################## |
|
823
|
|
|
|
|
|
|
sub lesion |
|
824
|
|
|
|
|
|
|
{ |
|
825
|
|
|
|
|
|
|
|
|
826
|
0
|
|
|
0
|
|
|
my $node = shift; |
|
827
|
|
|
|
|
|
|
|
|
828
|
0
|
|
|
|
|
|
my %params = @_; |
|
829
|
|
|
|
|
|
|
|
|
830
|
|
|
|
|
|
|
|
|
831
|
0
|
|
|
|
|
|
my $nodeLesion = $params{'nodes'}; |
|
832
|
0
|
|
|
|
|
|
my $connectionLesion = $params{'connections'}; |
|
833
|
|
|
|
|
|
|
|
|
834
|
|
|
|
|
|
|
# go through the layers & node inactivating random nodes according |
|
835
|
|
|
|
|
|
|
# to probability |
|
836
|
|
|
|
|
|
|
|
|
837
|
0
|
0
|
|
|
|
|
if ($nodeLesion) |
|
838
|
|
|
|
|
|
|
{ |
|
839
|
0
|
|
|
|
|
|
my $probability = rand(1); |
|
840
|
0
|
0
|
|
|
|
|
if ($probability < $nodeLesion) |
|
841
|
|
|
|
|
|
|
{ |
|
842
|
0
|
|
|
|
|
|
$node->{'active'} = 0; |
|
843
|
|
|
|
|
|
|
} |
|
844
|
|
|
|
|
|
|
} |
|
845
|
|
|
|
|
|
|
|
|
846
|
0
|
0
|
|
|
|
|
if ($connectionLesion) |
|
847
|
|
|
|
|
|
|
{ |
|
848
|
|
|
|
|
|
|
# init works from west to east, so we should here too |
|
849
|
0
|
|
|
|
|
|
my $nodeCounter=0; |
|
850
|
0
|
|
|
|
|
|
foreach my $connectedNode (@{$node->{'connectedNodesEast'}->{'nodes'}}) |
|
|
0
|
|
|
|
|
|
|
|
851
|
|
|
|
|
|
|
{ |
|
852
|
0
|
|
|
|
|
|
my $probability = rand(1); |
|
853
|
0
|
0
|
|
|
|
|
if ($probability < $connectionLesion) |
|
854
|
|
|
|
|
|
|
{ |
|
855
|
0
|
|
|
|
|
|
my $reverseNodeCounter=0; # maybe should have done this differntly in init, but 2 late now! |
|
856
|
0
|
|
|
|
|
|
${$node->{'connectedNodesEast'}->{'nodes'}}[$nodeCounter] = undef; |
|
|
0
|
|
|
|
|
|
|
|
857
|
0
|
|
|
|
|
|
foreach my $reverseConnection (@{$connectedNode->{'connectedNodesWest'}->{'nodes'}}) |
|
|
0
|
|
|
|
|
|
|
|
858
|
|
|
|
|
|
|
{ |
|
859
|
0
|
0
|
|
|
|
|
if ($reverseConnection == $node) |
|
860
|
|
|
|
|
|
|
{ |
|
861
|
0
|
|
|
|
|
|
${$connectedNode->{'connectedNodesEast'}->{'nodes'}}[$reverseNodeCounter] = undef; |
|
|
0
|
|
|
|
|
|
|
|
862
|
|
|
|
|
|
|
} |
|
863
|
0
|
|
|
|
|
|
$reverseNodeCounter++; |
|
864
|
|
|
|
|
|
|
} |
|
865
|
|
|
|
|
|
|
|
|
866
|
|
|
|
|
|
|
} |
|
867
|
|
|
|
|
|
|
|
|
868
|
0
|
|
|
|
|
|
$nodeCounter++; |
|
869
|
|
|
|
|
|
|
} |
|
870
|
|
|
|
|
|
|
|
|
871
|
|
|
|
|
|
|
|
|
872
|
|
|
|
|
|
|
} |
|
873
|
|
|
|
|
|
|
|
|
874
|
|
|
|
|
|
|
|
|
875
|
0
|
|
|
|
|
|
return 1; |
|
876
|
|
|
|
|
|
|
} |
|
877
|
|
|
|
|
|
|
|
|
878
|
|
|
|
|
|
|
1; |
|
879
|
|
|
|
|
|
|
|
|
880
|
|
|
|
|
|
|
=pod |
|
881
|
|
|
|
|
|
|
|
|
882
|
|
|
|
|
|
|
=head1 NAME |
|
883
|
|
|
|
|
|
|
|
|
884
|
|
|
|
|
|
|
AI::NNFlex - A base class for implementing neural networks |
|
885
|
|
|
|
|
|
|
|
|
886
|
|
|
|
|
|
|
=head1 SYNOPSIS |
|
887
|
|
|
|
|
|
|
|
|
888
|
|
|
|
|
|
|
use AI::NNFlex; |
|
889
|
|
|
|
|
|
|
|
|
890
|
|
|
|
|
|
|
my $network = AI::NNFlex->new(config parameter=>value); |
|
891
|
|
|
|
|
|
|
|
|
892
|
|
|
|
|
|
|
$network->add_layer( nodes=>x, |
|
893
|
|
|
|
|
|
|
activationfunction=>'function'); |
|
894
|
|
|
|
|
|
|
|
|
895
|
|
|
|
|
|
|
$network->init(); |
|
896
|
|
|
|
|
|
|
|
|
897
|
|
|
|
|
|
|
$network->lesion( nodes=>PROBABILITY, |
|
898
|
|
|
|
|
|
|
connections=>PROBABILITY); |
|
899
|
|
|
|
|
|
|
|
|
900
|
|
|
|
|
|
|
$network->dump_state (filename=>'badgers.wts'); |
|
901
|
|
|
|
|
|
|
|
|
902
|
|
|
|
|
|
|
$network->load_state (filename=>'badgers.wts'); |
|
903
|
|
|
|
|
|
|
|
|
904
|
|
|
|
|
|
|
my $outputsRef = $network->output(layer=>2,round=>1); |
|
905
|
|
|
|
|
|
|
|
|
906
|
|
|
|
|
|
|
|
|
907
|
|
|
|
|
|
|
=head1 DESCRIPTION |
|
908
|
|
|
|
|
|
|
|
|
909
|
|
|
|
|
|
|
AI::NNFlex is a base class for constructing your own neural network modules. To implement a neural network, start with the documentation for AI::NNFlex::Backprop, included in this distribution |
|
910
|
|
|
|
|
|
|
|
|
911
|
|
|
|
|
|
|
=head1 CONSTRUCTOR |
|
912
|
|
|
|
|
|
|
|
|
913
|
|
|
|
|
|
|
=head2 AI::NNFlex->new ( parameter => value ); |
|
914
|
|
|
|
|
|
|
|
|
915
|
|
|
|
|
|
|
|
|
916
|
|
|
|
|
|
|
randomweights=>MAXIMUM VALUE FOR INITIAL WEIGHT |
|
917
|
|
|
|
|
|
|
|
|
918
|
|
|
|
|
|
|
fixedweights=>WEIGHT TO USE FOR ALL CONNECTIONS |
|
919
|
|
|
|
|
|
|
|
|
920
|
|
|
|
|
|
|
debug=>[LIST OF CODES FOR MODULES TO DEBUG] |
|
921
|
|
|
|
|
|
|
|
|
922
|
|
|
|
|
|
|
round=>0 or 1, a true value sets the network to round output values to nearest of 1, -1 or 0 |
|
923
|
|
|
|
|
|
|
|
|
924
|
|
|
|
|
|
|
|
|
925
|
|
|
|
|
|
|
The constructor implements a fairly generalised network object with a number of parameters. |
|
926
|
|
|
|
|
|
|
|
|
927
|
|
|
|
|
|
|
|
|
928
|
|
|
|
|
|
|
The following parameters are optional: |
|
929
|
|
|
|
|
|
|
randomweights |
|
930
|
|
|
|
|
|
|
fixedweights |
|
931
|
|
|
|
|
|
|
debug |
|
932
|
|
|
|
|
|
|
round |
|
933
|
|
|
|
|
|
|
|
|
934
|
|
|
|
|
|
|
|
|
935
|
|
|
|
|
|
|
(Note, if randomweights is not specified the network will default to a random value from 0 to 1. |
|
936
|
|
|
|
|
|
|
|
|
937
|
|
|
|
|
|
|
=head1 METHODS |
|
938
|
|
|
|
|
|
|
|
|
939
|
|
|
|
|
|
|
This is a short list of the main methods implemented in AI::NNFlex. |
|
940
|
|
|
|
|
|
|
|
|
941
|
|
|
|
|
|
|
=head2 AI::NNFlex |
|
942
|
|
|
|
|
|
|
|
|
943
|
|
|
|
|
|
|
=head3 add_layer |
|
944
|
|
|
|
|
|
|
|
|
945
|
|
|
|
|
|
|
Syntax: |
|
946
|
|
|
|
|
|
|
|
|
947
|
|
|
|
|
|
|
$network->add_layer( nodes=>NUMBER OF NODES IN LAYER, |
|
948
|
|
|
|
|
|
|
persistentactivation=>RETAIN ACTIVATION BETWEEN PASSES, |
|
949
|
|
|
|
|
|
|
decay=>RATE OF ACTIVATION DECAY PER PASS, |
|
950
|
|
|
|
|
|
|
randomactivation=>MAXIMUM STARTING ACTIVATION, |
|
951
|
|
|
|
|
|
|
threshold=>NYI, |
|
952
|
|
|
|
|
|
|
activationfunction=>"ACTIVATION FUNCTION", |
|
953
|
|
|
|
|
|
|
randomweights=>MAX VALUE OF STARTING WEIGHTS); |
|
954
|
|
|
|
|
|
|
|
|
955
|
|
|
|
|
|
|
Add layer adds whatever parameters you specify as attributes of the layer, so if you want to implement additional parameters simply use them in your calling code. |
|
956
|
|
|
|
|
|
|
|
|
957
|
|
|
|
|
|
|
Add layer returns success or failure, and if successful adds a layer object to the $network->{'layers'} array. This layer object contains an attribute $layer->{'nodes'}, which is an array of nodes in the layer. |
|
958
|
|
|
|
|
|
|
|
|
959
|
|
|
|
|
|
|
=head3 init |
|
960
|
|
|
|
|
|
|
|
|
961
|
|
|
|
|
|
|
Syntax: |
|
962
|
|
|
|
|
|
|
|
|
963
|
|
|
|
|
|
|
$network->init(); |
|
964
|
|
|
|
|
|
|
|
|
965
|
|
|
|
|
|
|
Initialises connections between nodes, sets initial weights. The base AI::NNFlex init method implementes connections backwards and forwards from each node in each layer to each node in the preceeding and following layers. |
|
966
|
|
|
|
|
|
|
|
|
967
|
|
|
|
|
|
|
init adds the following attributes to each node: |
|
968
|
|
|
|
|
|
|
|
|
969
|
|
|
|
|
|
|
=over |
|
970
|
|
|
|
|
|
|
|
|
971
|
|
|
|
|
|
|
=item * |
|
972
|
|
|
|
|
|
|
{'connectedNodesWest'}->{'nodes'} - an array of node objects connected to this node on the west/left |
|
973
|
|
|
|
|
|
|
|
|
974
|
|
|
|
|
|
|
=item * |
|
975
|
|
|
|
|
|
|
{'connectedNodesWest'}->{'weights'} - an array of scalar numeric weights for the connections to these nodes |
|
976
|
|
|
|
|
|
|
|
|
977
|
|
|
|
|
|
|
|
|
978
|
|
|
|
|
|
|
=item * |
|
979
|
|
|
|
|
|
|
{'connectedNodesEast'}->{'nodes'} - an array of node objects connected to this node on the east/right |
|
980
|
|
|
|
|
|
|
|
|
981
|
|
|
|
|
|
|
=item * |
|
982
|
|
|
|
|
|
|
{'connectedNodesEast'}->{'weights'} - an array of scalar numeric weights for the connections to these nodes |
|
983
|
|
|
|
|
|
|
|
|
984
|
|
|
|
|
|
|
=back |
|
985
|
|
|
|
|
|
|
|
|
986
|
|
|
|
|
|
|
The connections to easterly nodes are not used in feedforward networks. |
|
987
|
|
|
|
|
|
|
Init also implements the Bias node if specified in the network config. |
|
988
|
|
|
|
|
|
|
|
|
989
|
|
|
|
|
|
|
=head3 connect |
|
990
|
|
|
|
|
|
|
|
|
991
|
|
|
|
|
|
|
Syntax: |
|
992
|
|
|
|
|
|
|
$network->connect(fromlayer=>1,tolayer=>0); |
|
993
|
|
|
|
|
|
|
$network->connect(fromnode=>'1,1',tonode=>'0,0'); |
|
994
|
|
|
|
|
|
|
|
|
995
|
|
|
|
|
|
|
Connect allows you to manually create connections between layers or nodes, including recurrent connections back to the same layer/node. Node indices must be LAYER,NODE, numbered from 0. |
|
996
|
|
|
|
|
|
|
|
|
997
|
|
|
|
|
|
|
Weight assignments for the connection are calculated based on the network wide weight policy (see INIT). |
|
998
|
|
|
|
|
|
|
|
|
999
|
|
|
|
|
|
|
=head3 lesion |
|
1000
|
|
|
|
|
|
|
|
|
1001
|
|
|
|
|
|
|
$network->lesion (nodes=>PROBABILITY,connections=>PROBABILITY) |
|
1002
|
|
|
|
|
|
|
|
|
1003
|
|
|
|
|
|
|
Damages the network. |
|
1004
|
|
|
|
|
|
|
|
|
1005
|
|
|
|
|
|
|
B |
|
1006
|
|
|
|
|
|
|
|
|
1007
|
|
|
|
|
|
|
A value between 0 and 1, denoting the probability of a given node or connection being damaged. |
|
1008
|
|
|
|
|
|
|
|
|
1009
|
|
|
|
|
|
|
Note: this method may be called on a per network, per node or per layer basis using the appropriate object. |
|
1010
|
|
|
|
|
|
|
|
|
1011
|
|
|
|
|
|
|
=head1 EXAMPLES |
|
1012
|
|
|
|
|
|
|
|
|
1013
|
|
|
|
|
|
|
See the code in ./examples. For any given version of NNFlex, xor.pl will contain the latest functionality. |
|
1014
|
|
|
|
|
|
|
|
|
1015
|
|
|
|
|
|
|
|
|
1016
|
|
|
|
|
|
|
=head1 PREREQs |
|
1017
|
|
|
|
|
|
|
|
|
1018
|
|
|
|
|
|
|
None. NNFlex should run OK on any version of Perl 5 >. |
|
1019
|
|
|
|
|
|
|
|
|
1020
|
|
|
|
|
|
|
|
|
1021
|
|
|
|
|
|
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=head1 ACKNOWLEDGEMENTS |
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1022
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1023
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Phil Brierley, for his excellent free java code, that solved my backprop problem |
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1024
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1025
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Dr Martin Le Voi, for help with concepts of NN in the early stages |
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1026
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1027
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Dr David Plaut, for help with the project that this code was originally intended for. |
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1028
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1029
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Graciliano M.Passos for suggestions & improved code (see SEE ALSO). |
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1030
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1031
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Dr Scott Fahlman, whose very readable paper 'An empirical study of learning speed in backpropagation networks' (1988) has driven many of the improvements made so far. |
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1032
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1033
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=head1 SEE ALSO |
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1034
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1035
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AI::NNFlex::Backprop |
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1036
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AI::NNFlex::Feedforward |
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1037
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AI::NNFlex::Mathlib |
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1038
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AI::NNFlex::Dataset |
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1039
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1040
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AI::NNEasy - Developed by Graciliano M.Passos |
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1041
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(Shares some common code with NNFlex) |
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1042
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1043
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1044
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=head1 TODO |
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1045
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1046
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Lots of things: |
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1047
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1048
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clean up the perldocs some more |
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1049
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write gamma modules |
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1050
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write BPTT modules |
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1051
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write a perceptron learning module |
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1052
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speed it up |
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1053
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write a tk gui |
|
1054
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1055
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=head1 CHANGES |
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1056
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1057
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v0.11 introduces the lesion method, png support in the draw module and datasets. |
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1058
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1059
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v0.12 fixes a bug in reinforce.pm & adds a reflector in feedforward->run to make $network->run($dataset) work. |
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1060
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1061
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v0.13 introduces the momentum learning algorithm and fixes a bug that allowed training to proceed even if the node activation function module can't be loaded |
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1062
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1063
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v0.14 fixes momentum and backprop so they are no longer nailed to tanh hidden units only. |
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1064
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1065
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v0.15 fixes a bug in feedforward, and reduces the debug overhead |
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1066
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1067
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v0.16 changes some underlying addressing of weights, to simplify and speed |
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1068
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1069
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v0.17 is a bugfix release, plus some cleaning of UI |
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1070
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1071
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v0.20 changes AI::NNFlex to be a base class, and ships three different network types (i.e. training algorithms). Backprop & momentum are both networks of the feedforward class, and inherit their 'run' method from feedforward.pm. 0.20 also fixes a whole raft of bugs and 'not nices'. |
|
1072
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1073
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v0.21 cleans up the perldocs more, and makes nnflex more distinctly a base module. There are quite a number of changes in Backprop in the v0.21 distribution. |
|
1074
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1075
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v0.22 introduces the ::connect method, to allow creation of recurrent connections, and manual control over connections between nodes/layers. |
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1076
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1077
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v0.23 includes a Hopfield module in the distribution. |
|
1078
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1079
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v0.24 fixes a bug in the bias weight calculations |
|
1080
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|
1081
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=head1 COPYRIGHT |
|
1082
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|
1083
|
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Copyright (c) 2004-2005 Charles Colbourn. All rights reserved. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. |
|
1084
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|
1085
|
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=head1 CONTACT |
|
1086
|
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|
1087
|
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|
charlesc@nnflex.g0n.net |
|
1088
|
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|
1089
|
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=cut |