|  line  | 
 stmt  | 
 bran  | 
 cond  | 
 sub  | 
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 package xDT::Parser;  | 
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1
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69267
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 use v5.10;  | 
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4
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1
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656
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 use Moose;  | 
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490411
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8394
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 use FileHandle;  | 
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10775
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987
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 use xDT::Record;  | 
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 use xDT::RecordType;  | 
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684
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 use xDT::Object;  | 
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 =head1 NAME  | 
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13
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 xDT::Parser - A Parser for xDT files.  | 
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14
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 =head1 VERSION  | 
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 Version 1.04  | 
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 =cut  | 
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 our $VERSION = '1.04';  | 
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 =head1 SYNOPSIS  | 
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25
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26
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 Can be used to open xdt files and strings, and to iterate over contained objects.  | 
| 
27
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28
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     use xDT::Parser;  | 
| 
29
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30
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     my $parser = xDT::Parser->new();  | 
| 
31
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     # or  | 
| 
32
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     my $parser = xDT::Parser->new(record_type_config => $config);  | 
| 
33
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     # or  | 
| 
34
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     my $parser = xDT::Parser->new(  | 
| 
35
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         record_type_config => xDT::Parser::build_config_from_xml($xml_file)  | 
| 
36
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     );  | 
| 
37
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     # or  | 
| 
38
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     my $parser = xDT::Parser->new(  | 
| 
39
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         record_type_config => JSON::Parser::read_json($json_file)  | 
| 
40
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     );  | 
| 
41
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42
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     # A record type configuration can be provided via xml file or arrayref and can be used to add  | 
| 
43
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     # metadata (like accessor string or labels) to each record type.  | 
| 
44
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45
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     $parser->open(file => $xdt_file);     # read from file  | 
| 
46
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     # or  | 
| 
47
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     $parser->open(string => $xdt_string); # read from string  | 
| 
48
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| 
49
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     while (my $object = $parser->next_object) {  # iterate xdt objects  | 
| 
50
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         # ...  | 
| 
51
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     }  | 
| 
52
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| 
53
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     $parser->close(); # close the file handle  | 
| 
54
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| 
55
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 =head1 ATTRIBUTES  | 
| 
56
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| 
57
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 =head2 fh  | 
| 
58
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| 
59
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 FileHandle to the currently open file.  | 
| 
60
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    | 
| 
61
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 =cut  | 
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62
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63
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 has 'fh' => (  | 
| 
64
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     is            => 'rw',  | 
| 
65
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     isa           => 'FileHandle',  | 
| 
66
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     documentation => q{The filehandle the parser will use to read xDT data.},  | 
| 
67
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 );  | 
| 
68
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    | 
| 
69
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 =head2 record_type_config  | 
| 
70
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    | 
| 
71
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 The C<RecordType> configurations.  | 
| 
72
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| 
73
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 e.g.:  | 
| 
74
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75
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     [{  | 
| 
76
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         "id": "0201",  | 
| 
77
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         "length": "9",  | 
| 
78
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         "type": "num",  | 
| 
79
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         "accessor": "bsnr",  | 
| 
80
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         "labels": {  | 
| 
81
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             "en": "BSNR",  | 
| 
82
 | 
 
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             "de": "BSNR"  | 
| 
83
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         }  | 
| 
84
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     }]  | 
| 
85
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| 
86
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 =cut  | 
| 
87
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    | 
| 
88
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 has 'record_type_config' => (  | 
| 
89
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     is            => 'rw',  | 
| 
90
 | 
 
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 | 
 
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     isa           => 'ArrayRef',  | 
| 
91
 | 
 
 | 
 
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 | 
 
 | 
     documentation => q{Contains configurations for record types.},  | 
| 
92
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 | 
 );  | 
| 
93
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    | 
| 
94
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    | 
| 
95
 | 
 
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 around BUILDARGS => sub {  | 
| 
96
 | 
 
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 | 
     my $orig  = shift;  | 
| 
97
 | 
 
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 | 
     my $class = shift;  | 
| 
98
 | 
 
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    | 
| 
99
 | 
 
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 | 
 
 | 
 
 | 
     if (@_ == 1) {  | 
| 
100
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         return $class->$orig(record_type_config => $_[0]);  | 
| 
101
 | 
 
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 | 
 
 | 
 
 | 
 
 | 
     } else {  | 
| 
102
 | 
 
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         my %params = @_;  | 
| 
103
 | 
 
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         return $class->$orig(\%params);  | 
| 
104
 | 
 
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     }  | 
| 
105
 | 
 
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 };  | 
| 
106
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    | 
| 
107
 | 
 
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 | 
 
 | 
 
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 | 
 =head1 SUBROUTINES/METHODS  | 
| 
108
 | 
 
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 | 
    | 
| 
109
 | 
 
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 | 
 
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 =head2 open  | 
| 
110
 | 
 
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    | 
| 
111
 | 
 
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 | 
 $parser->open(file => 'example.gdt');  | 
| 
112
 | 
 
 | 
 
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 | 
 
 | 
 
 | 
 
 | 
 $parser->open(string => $xdt_string);  | 
| 
113
 | 
 
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    | 
| 
114
 | 
 
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 | 
 Open a file or string with the parser.  | 
| 
115
 | 
 
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 | 
 If both file and string are given, the string will be ignored.  | 
| 
116
 | 
 
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 | 
 More information about the file format can be found at L<http://search.cpan.org/dist/xDT-RecordType/>.  | 
| 
117
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    | 
| 
118
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 =cut  | 
| 
119
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    | 
| 
120
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 sub open {  | 
| 
121
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0
  
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0
  
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1
  
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     my ($self, %args) = @_;  | 
| 
122
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    | 
| 
123
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0
  
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 | 
     my $file   = $args{file};  | 
| 
124
 | 
  
0
  
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 | 
 
 | 
     my $string = $args{string};  | 
| 
125
 | 
  
0
  
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 | 
     my $fh;  | 
| 
126
 | 
 
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    | 
| 
127
 | 
  
0
  
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  0
  
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  0
  
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 | 
 
 | 
     die 'Error: No file or string argument given to parse xDT.'  | 
| 
128
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         unless (defined $file or defined $string);  | 
| 
129
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    | 
| 
130
 | 
  
0
  
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  0
  
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     if (defined $file) {  | 
| 
131
 | 
  
0
  
 | 
  
  0
  
 | 
 
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 | 
         die "Error: Provided file '$file' does not exist or is not readable."  | 
| 
132
 | 
 
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 | 
             unless (-f $file);  | 
| 
133
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    | 
| 
134
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         $fh = FileHandle->new($file, 'r')  | 
| 
135
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
             or die "Error: Could not open file handle for '$file'.";  | 
| 
136
 | 
 
 | 
 
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 | 
 
 | 
 
 | 
 
 | 
     } else {  | 
| 
137
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         $fh = FileHandle->new(\$string, 'r')  | 
| 
138
 | 
 
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 | 
 
 | 
 
 | 
             or die 'Error: Could not open file handle for provided string.';  | 
| 
139
 | 
 
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 | 
 
 | 
 
 | 
     }  | 
| 
140
 | 
 
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    | 
| 
141
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     $self->fh($fh);  | 
| 
142
 | 
 
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 }  | 
| 
143
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    | 
| 
144
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 | 
 
 | 
 =head2 close  | 
| 
145
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    | 
| 
146
 | 
 
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 | 
 Closes the parsers filehandle  | 
| 
147
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    | 
| 
148
 | 
 
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 | 
 
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 =cut  | 
| 
149
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 | 
    | 
| 
150
 | 
 
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 | 
 
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 | 
 sub close {  | 
| 
151
 | 
  
0
  
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 | 
  
0
  
 | 
  
1
  
 | 
 
 | 
     my $self = shift;  | 
| 
152
 | 
 
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 | 
 
 | 
 
 | 
    | 
| 
153
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     close $self->fh;  | 
| 
154
 | 
 
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 | 
 }  | 
| 
155
 | 
 
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    | 
| 
156
 | 
 
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 | 
 
 | 
 =head2 next_object  | 
| 
157
 | 
 
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    | 
| 
158
 | 
 
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 | 
 
 | 
 
 | 
 Returns the next object from xDT.  | 
| 
159
 | 
 
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 | 
 
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 | 
 
 | 
 
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    | 
| 
160
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =cut  | 
| 
161
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
162
 | 
 
 | 
 
 | 
 
 | 
 
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 | 
 sub next_object {  | 
| 
163
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
  
1
  
 | 
 
 | 
     my $self = shift;  | 
| 
164
 | 
  
0
  
 | 
 
 | 
 
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 | 
 
 | 
 
 | 
     my @records;  | 
| 
165
 | 
 
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 | 
 
 | 
 
 | 
    | 
| 
166
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     while (my $record = $self->_next()) {  | 
| 
167
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         last if ($record->is_object_end);  | 
| 
168
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         push @records, $record;  | 
| 
169
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
170
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
171
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     return undef unless (scalar @records);  | 
| 
172
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
173
 | 
  
0
  
 | 
 
 | 
 
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 | 
 
 | 
     my $object = xDT::Object->new();  | 
| 
174
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     foreach my $record (@records) {  | 
| 
175
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         $object->add_record($record);  | 
| 
176
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     }  | 
| 
177
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
178
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     return $object;  | 
| 
179
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
180
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
181
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head2 build_config_from_xml  | 
| 
182
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
183
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Extracts metadata for a given record type id from a XML config file, if a file was given.  | 
| 
184
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Otherwise id and accessor are set to the given id and all other attributes are undef.  | 
| 
185
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
186
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 XML::Simple must be installed in order to use this method.  | 
| 
187
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
188
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Format of the XML config file:  | 
| 
189
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
190
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	<RecordTypes>  | 
| 
191
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		<RecordType id="theId" length="theLength" type="theType" accessor="theAccessor">  | 
| 
192
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			<label lang="en">TheEnglishLabel</label>  | 
| 
193
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			<label lang="de">TheGermanLabel</label>  | 
| 
194
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 			<!-- more labels -->  | 
| 
195
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		</RecordType>  | 
| 
196
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		<!-- more record types -->  | 
| 
197
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	</RecordTypes>  | 
| 
198
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
199
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =cut  | 
| 
200
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
201
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub build_config_from_xml {  | 
| 
202
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
  
1
  
 | 
 
 | 
 	my $file = shift;  | 
| 
203
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
204
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     return [] unless (length $file);  | 
| 
205
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
206
 | 
1
 | 
 
 | 
 
 | 
  
1
  
 | 
 
 | 
1129
 | 
     use XML::Simple;  | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
9800
 | 
    | 
| 
 
 | 
1
 | 
 
 | 
 
 | 
 
 | 
 
 | 
16
 | 
    | 
| 
207
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	return XML::Simple->new(  | 
| 
208
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         KeyAttr    => { label => 'lang' },  | 
| 
209
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         GroupTags  => { labels => 'label' },  | 
| 
210
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 		ContentKey => '-content',  | 
| 
211
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 	)->XMLin($file)->{RecordType};  | 
| 
212
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
213
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
214
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 sub _next {  | 
| 
215
 | 
  
0
  
 | 
 
 | 
 
 | 
  
0
  
 | 
 
 | 
 
 | 
     my $self = shift;  | 
| 
216
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     my $line;  | 
| 
217
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
       | 
| 
218
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     do {  | 
| 
219
 | 
  
0
  
 | 
  
  0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         $line = $self->fh->getline() or return undef;  | 
| 
220
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     } while ($line =~ /^\s*$/);  | 
| 
221
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
222
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     my $record = xDT::Record->new($line);  | 
| 
223
 | 
  
0
  
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     $record->set_record_type(xDT::RecordType::build_from_arrayref(  | 
| 
224
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         substr($line, 3, 4),  | 
| 
225
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
         $self->record_type_config,  | 
| 
226
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     ));  | 
| 
227
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
228
 | 
0
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
     return $record;  | 
| 
229
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 }  | 
| 
230
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
231
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =head1 AUTHOR  | 
| 
232
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
233
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 Christoph Beger, C<< <christoph.beger at medizin.uni-leipzig.de> >>  | 
| 
234
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
235
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 =cut  | 
| 
236
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
237
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 __PACKAGE__->meta->make_immutable;  | 
| 
238
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
    | 
| 
239
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 1; # End of xDT::Parser  |