line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
=head1 NAME |
2
|
|
|
|
|
|
|
|
3
|
|
|
|
|
|
|
Text::Same::Match |
4
|
|
|
|
|
|
|
|
5
|
|
|
|
|
|
|
=head1 DESCRIPTION |
6
|
|
|
|
|
|
|
|
7
|
|
|
|
|
|
|
Objects of this class represent a match between a group of chunks |
8
|
|
|
|
|
|
|
(generally lines) in one source (eg a file) and a group of chunks in |
9
|
|
|
|
|
|
|
another. The "chunks" could potentially be paragraphs or sentences. |
10
|
|
|
|
|
|
|
|
11
|
|
|
|
|
|
|
=head1 SYNOPSIS |
12
|
|
|
|
|
|
|
|
13
|
|
|
|
|
|
|
my @pairs = ($chunk_pair1, $chunk_pair2, ...); |
14
|
|
|
|
|
|
|
my $match = new Text::Same::Match(@pairs); |
15
|
|
|
|
|
|
|
|
16
|
|
|
|
|
|
|
=head1 METHODS |
17
|
|
|
|
|
|
|
|
18
|
|
|
|
|
|
|
See below. Methods private to this module are prefixed by an |
19
|
|
|
|
|
|
|
underscore. |
20
|
|
|
|
|
|
|
|
21
|
|
|
|
|
|
|
=cut |
22
|
|
|
|
|
|
|
|
23
|
|
|
|
|
|
|
package Text::Same::Match; |
24
|
|
|
|
|
|
|
|
25
|
3
|
|
|
3
|
|
16
|
use warnings; |
|
3
|
|
|
|
|
5
|
|
|
3
|
|
|
|
|
86
|
|
26
|
3
|
|
|
3
|
|
15
|
use strict; |
|
3
|
|
|
|
|
6
|
|
|
3
|
|
|
|
|
186
|
|
27
|
3
|
|
|
3
|
|
14
|
use Carp; |
|
3
|
|
|
|
|
5
|
|
|
3
|
|
|
|
|
1620
|
|
28
|
|
|
|
|
|
|
|
29
|
3
|
|
|
3
|
|
17
|
use vars qw($VERSION); |
|
3
|
|
|
|
|
4
|
|
|
3
|
|
|
|
|
3531
|
|
30
|
|
|
|
|
|
|
$VERSION = '0.07'; |
31
|
|
|
|
|
|
|
|
32
|
|
|
|
|
|
|
=head2 new |
33
|
|
|
|
|
|
|
|
34
|
|
|
|
|
|
|
Title : new |
35
|
|
|
|
|
|
|
Usage : $match = new Text::Same::Match(@pairs) |
36
|
|
|
|
|
|
|
Function: Creates a new Match object from an array of ChunkPair objects |
37
|
|
|
|
|
|
|
Returns : A Text::Same::Match object |
38
|
|
|
|
|
|
|
Args : an array of ChunkPair objects |
39
|
|
|
|
|
|
|
|
40
|
|
|
|
|
|
|
=cut |
41
|
|
|
|
|
|
|
|
42
|
|
|
|
|
|
|
sub new |
43
|
|
|
|
|
|
|
{ |
44
|
107
|
|
|
107
|
1
|
140
|
my $arg = shift; |
45
|
107
|
|
33
|
|
|
421
|
my $class = ref($arg) || $arg; |
46
|
|
|
|
|
|
|
|
47
|
107
|
|
|
|
|
404
|
my $self = {@_}; |
48
|
|
|
|
|
|
|
|
49
|
107
|
|
|
|
|
201
|
$self->{min1} = 999999999999; |
50
|
107
|
|
|
|
|
171
|
$self->{max1} = -1; |
51
|
107
|
|
|
|
|
150
|
$self->{min2} = 999999999999; |
52
|
107
|
|
|
|
|
172
|
$self->{max2} = -1; |
53
|
|
|
|
|
|
|
|
54
|
107
|
|
|
|
|
225
|
bless $self, $class; |
55
|
107
|
|
|
|
|
117
|
$self->_update_stats(@{$self->{pairs}}); |
|
107
|
|
|
|
|
282
|
|
56
|
|
|
|
|
|
|
|
57
|
107
|
|
|
|
|
314
|
return $self; |
58
|
|
|
|
|
|
|
} |
59
|
|
|
|
|
|
|
|
60
|
|
|
|
|
|
|
|
61
|
|
|
|
|
|
|
=head2 add |
62
|
|
|
|
|
|
|
|
63
|
|
|
|
|
|
|
Title : add |
64
|
|
|
|
|
|
|
Usage : $match->add(@chunk_pairs); |
65
|
|
|
|
|
|
|
Function: add ChunkPair objects to this objects - no checks are made that |
66
|
|
|
|
|
|
|
the new ChunkPairs are ajacent to the current pairs |
67
|
|
|
|
|
|
|
Returns : $self |
68
|
|
|
|
|
|
|
Args : an array of ChunkPair objects |
69
|
|
|
|
|
|
|
|
70
|
|
|
|
|
|
|
=cut |
71
|
|
|
|
|
|
|
|
72
|
|
|
|
|
|
|
sub add |
73
|
|
|
|
|
|
|
{ |
74
|
206
|
|
|
206
|
1
|
250
|
my $self = shift; |
75
|
206
|
|
|
|
|
427
|
$self->_update_stats(@_); |
76
|
206
|
|
|
|
|
347
|
push @{$self->{pairs}}, @_; |
|
206
|
|
|
|
|
564
|
|
77
|
206
|
|
|
|
|
415
|
$self; |
78
|
|
|
|
|
|
|
} |
79
|
|
|
|
|
|
|
|
80
|
|
|
|
|
|
|
=head2 source1 |
81
|
|
|
|
|
|
|
|
82
|
|
|
|
|
|
|
Title : source1 |
83
|
|
|
|
|
|
|
Usage : my $chunked_source = $match->source1; |
84
|
|
|
|
|
|
|
Function: get the ChunkedSource for the source 1 |
85
|
|
|
|
|
|
|
Returns : a ChunkedSource reference |
86
|
|
|
|
|
|
|
Args : none |
87
|
|
|
|
|
|
|
|
88
|
|
|
|
|
|
|
=cut |
89
|
|
|
|
|
|
|
|
90
|
|
|
|
|
|
|
sub source1 |
91
|
|
|
|
|
|
|
{ |
92
|
140
|
|
|
140
|
1
|
192
|
my $self = shift; |
93
|
140
|
|
|
|
|
437
|
return $self->{source1}; |
94
|
|
|
|
|
|
|
} |
95
|
|
|
|
|
|
|
|
96
|
|
|
|
|
|
|
=head2 source2 |
97
|
|
|
|
|
|
|
|
98
|
|
|
|
|
|
|
Title : source2 |
99
|
|
|
|
|
|
|
Usage : my $chunked_source = $match->source2; |
100
|
|
|
|
|
|
|
Function: get the ChunkedSource for the source 2 |
101
|
|
|
|
|
|
|
Returns : a ChunkedSource reference |
102
|
|
|
|
|
|
|
Args : none |
103
|
|
|
|
|
|
|
|
104
|
|
|
|
|
|
|
=cut |
105
|
|
|
|
|
|
|
|
106
|
|
|
|
|
|
|
sub source2 |
107
|
|
|
|
|
|
|
{ |
108
|
140
|
|
|
140
|
1
|
174
|
my $self = shift; |
109
|
140
|
|
|
|
|
447
|
return $self->{source2}; |
110
|
|
|
|
|
|
|
} |
111
|
|
|
|
|
|
|
|
112
|
|
|
|
|
|
|
sub _update_stats |
113
|
|
|
|
|
|
|
{ |
114
|
313
|
|
|
313
|
|
384
|
my $self = shift; |
115
|
313
|
|
|
|
|
899
|
my @new_pairs = @_; |
116
|
|
|
|
|
|
|
|
117
|
313
|
|
|
|
|
494
|
for my $chunk_pair (@new_pairs) { |
118
|
313
|
|
|
|
|
779
|
my $chunk_index1 = $chunk_pair->chunk_index1; |
119
|
313
|
|
|
|
|
763
|
my $chunk_index2 = $chunk_pair->chunk_index2; |
120
|
|
|
|
|
|
|
|
121
|
313
|
100
|
|
|
|
778
|
if ($chunk_index1 < $self->{min1}) { |
122
|
107
|
|
|
|
|
189
|
$self->{min1} = $chunk_index1; |
123
|
|
|
|
|
|
|
} |
124
|
313
|
50
|
|
|
|
664
|
if ($chunk_index1 > $self->{max1}) { |
125
|
313
|
|
|
|
|
432
|
$self->{max1} = $chunk_index1; |
126
|
|
|
|
|
|
|
} |
127
|
313
|
100
|
|
|
|
631
|
if ($chunk_index2 < $self->{min2}) { |
128
|
107
|
|
|
|
|
140
|
$self->{min2} = $chunk_index2; |
129
|
|
|
|
|
|
|
} |
130
|
313
|
50
|
|
|
|
621
|
if ($chunk_index2 > $self->{max2}) { |
131
|
313
|
|
|
|
|
1018
|
$self->{max2} = $chunk_index2; |
132
|
|
|
|
|
|
|
} |
133
|
|
|
|
|
|
|
} |
134
|
|
|
|
|
|
|
} |
135
|
|
|
|
|
|
|
|
136
|
|
|
|
|
|
|
|
137
|
|
|
|
|
|
|
=head2 min1 |
138
|
|
|
|
|
|
|
|
139
|
|
|
|
|
|
|
Title : min1 |
140
|
|
|
|
|
|
|
Usage : $match->min1; |
141
|
|
|
|
|
|
|
Function: return the minimum index of the chunks in the first (ie. left) of |
142
|
|
|
|
|
|
|
the ChunkedSources held in this Match |
143
|
|
|
|
|
|
|
Args : None |
144
|
|
|
|
|
|
|
|
145
|
|
|
|
|
|
|
=cut |
146
|
|
|
|
|
|
|
|
147
|
|
|
|
|
|
|
sub min1 |
148
|
|
|
|
|
|
|
{ |
149
|
319
|
|
|
319
|
1
|
1490
|
return $_[0]->{min1}; |
150
|
|
|
|
|
|
|
} |
151
|
|
|
|
|
|
|
|
152
|
|
|
|
|
|
|
=head2 max1 |
153
|
|
|
|
|
|
|
|
154
|
|
|
|
|
|
|
Title : max1 |
155
|
|
|
|
|
|
|
Usage : $match->max1; |
156
|
|
|
|
|
|
|
Function: return the maximum index of the chunks in the first (ie. left) of |
157
|
|
|
|
|
|
|
the ChunkedSources held in this Match |
158
|
|
|
|
|
|
|
Args : None |
159
|
|
|
|
|
|
|
|
160
|
|
|
|
|
|
|
=cut |
161
|
|
|
|
|
|
|
|
162
|
|
|
|
|
|
|
sub max1 |
163
|
|
|
|
|
|
|
{ |
164
|
650
|
|
|
650
|
1
|
2095
|
return $_[0]->{max1}; |
165
|
|
|
|
|
|
|
} |
166
|
|
|
|
|
|
|
|
167
|
|
|
|
|
|
|
=head2 min2 |
168
|
|
|
|
|
|
|
|
169
|
|
|
|
|
|
|
Title : min2 |
170
|
|
|
|
|
|
|
Usage : $match->min2; |
171
|
|
|
|
|
|
|
Function: return the minimum index of the chunks in the second (ie. right) of |
172
|
|
|
|
|
|
|
the ChunkedSources held in this Match |
173
|
|
|
|
|
|
|
Args : None |
174
|
|
|
|
|
|
|
|
175
|
|
|
|
|
|
|
=cut |
176
|
|
|
|
|
|
|
|
177
|
|
|
|
|
|
|
sub min2 |
178
|
|
|
|
|
|
|
{ |
179
|
319
|
|
|
319
|
1
|
1001
|
return $_[0]->{min2}; |
180
|
|
|
|
|
|
|
} |
181
|
|
|
|
|
|
|
|
182
|
|
|
|
|
|
|
=head2 max2 |
183
|
|
|
|
|
|
|
|
184
|
|
|
|
|
|
|
Title : max2 |
185
|
|
|
|
|
|
|
Usage : $match->max2; |
186
|
|
|
|
|
|
|
Function: return the maximum index of the chunks in the second (ie. right) of |
187
|
|
|
|
|
|
|
the ChunkedSources held in this Match |
188
|
|
|
|
|
|
|
Args : None |
189
|
|
|
|
|
|
|
|
190
|
|
|
|
|
|
|
=cut |
191
|
|
|
|
|
|
|
|
192
|
|
|
|
|
|
|
sub max2 |
193
|
|
|
|
|
|
|
{ |
194
|
653
|
|
|
653
|
1
|
2074
|
return $_[0]->{max2}; |
195
|
|
|
|
|
|
|
} |
196
|
|
|
|
|
|
|
|
197
|
|
|
|
|
|
|
=head2 set_min1 |
198
|
|
|
|
|
|
|
|
199
|
|
|
|
|
|
|
Title : set_min1 |
200
|
|
|
|
|
|
|
Usage : $match->set_min1; |
201
|
|
|
|
|
|
|
Function: Set the minimum index of the chunks in the first (ie. left) of |
202
|
|
|
|
|
|
|
the ChunkedSources held in this Match |
203
|
|
|
|
|
|
|
|
204
|
|
|
|
|
|
|
=cut |
205
|
|
|
|
|
|
|
|
206
|
|
|
|
|
|
|
sub set_min1 |
207
|
|
|
|
|
|
|
{ |
208
|
107
|
|
|
107
|
1
|
132
|
my $self = shift; |
209
|
107
|
|
|
|
|
127
|
my $new_val = shift; |
210
|
107
|
50
|
|
|
|
247
|
if ($new_val > $self->{max1}) { |
211
|
0
|
|
|
|
|
0
|
die "min greater than max\n"; |
212
|
|
|
|
|
|
|
} |
213
|
107
|
|
|
|
|
253
|
$self->{min1} = $new_val; |
214
|
|
|
|
|
|
|
} |
215
|
|
|
|
|
|
|
|
216
|
|
|
|
|
|
|
=head2 set_min2 |
217
|
|
|
|
|
|
|
|
218
|
|
|
|
|
|
|
Title : set_min2 |
219
|
|
|
|
|
|
|
Usage : $match->set_min2; |
220
|
|
|
|
|
|
|
Function: Set the minimum index of the chunks in the second (ie. right) of |
221
|
|
|
|
|
|
|
the ChunkedSources held in this Match |
222
|
|
|
|
|
|
|
|
223
|
|
|
|
|
|
|
=cut |
224
|
|
|
|
|
|
|
|
225
|
|
|
|
|
|
|
sub set_min2 |
226
|
|
|
|
|
|
|
{ |
227
|
107
|
|
|
107
|
1
|
147
|
my $self = shift; |
228
|
107
|
|
|
|
|
126
|
my $new_val = shift; |
229
|
107
|
50
|
|
|
|
252
|
if ($new_val > $self->{max2}) { |
230
|
0
|
|
|
|
|
0
|
die "min greater than max\n"; |
231
|
|
|
|
|
|
|
} |
232
|
107
|
|
|
|
|
244
|
$self->{min2} = $new_val; |
233
|
|
|
|
|
|
|
} |
234
|
|
|
|
|
|
|
|
235
|
|
|
|
|
|
|
=head2 set_max1 |
236
|
|
|
|
|
|
|
|
237
|
|
|
|
|
|
|
Title : set_max1 |
238
|
|
|
|
|
|
|
Usage : $match->set_max1; |
239
|
|
|
|
|
|
|
Function: Set the maximum index of the chunks in the first (ie. left) of |
240
|
|
|
|
|
|
|
the ChunkedSources held in this Match |
241
|
|
|
|
|
|
|
|
242
|
|
|
|
|
|
|
=cut |
243
|
|
|
|
|
|
|
|
244
|
|
|
|
|
|
|
sub set_max1 |
245
|
|
|
|
|
|
|
{ |
246
|
107
|
|
|
107
|
1
|
130
|
my $self = shift; |
247
|
107
|
|
|
|
|
129
|
my $new_val = shift; |
248
|
107
|
50
|
|
|
|
275
|
if ($new_val < $self->{min1}) { |
249
|
0
|
|
|
|
|
0
|
die "min greater than max\n"; |
250
|
|
|
|
|
|
|
} |
251
|
107
|
|
|
|
|
259
|
$self->{max1} = $new_val; |
252
|
|
|
|
|
|
|
} |
253
|
|
|
|
|
|
|
|
254
|
|
|
|
|
|
|
=head2 set_max2 |
255
|
|
|
|
|
|
|
|
256
|
|
|
|
|
|
|
Title : set_max2 |
257
|
|
|
|
|
|
|
Usage : $match->set_max2; |
258
|
|
|
|
|
|
|
Function: Set the maximum index of the chunks in the second (ie. right) of |
259
|
|
|
|
|
|
|
the ChunkedSources held in this Match |
260
|
|
|
|
|
|
|
|
261
|
|
|
|
|
|
|
=cut |
262
|
|
|
|
|
|
|
|
263
|
|
|
|
|
|
|
sub set_max2 |
264
|
|
|
|
|
|
|
{ |
265
|
107
|
|
|
107
|
1
|
135
|
my $self = shift; |
266
|
107
|
|
|
|
|
128
|
my $new_val = shift; |
267
|
107
|
50
|
|
|
|
261
|
if ($new_val < $self->{min2}) { |
268
|
0
|
|
|
|
|
0
|
die "min greater than max\n"; |
269
|
|
|
|
|
|
|
} |
270
|
107
|
|
|
|
|
403
|
$self->{max2} = $new_val; |
271
|
|
|
|
|
|
|
} |
272
|
|
|
|
|
|
|
|
273
|
|
|
|
|
|
|
=head2 pairs |
274
|
|
|
|
|
|
|
|
275
|
|
|
|
|
|
|
Title : pairs |
276
|
|
|
|
|
|
|
Usage : my @pairs = $match->pairs; |
277
|
|
|
|
|
|
|
Function: return all the ChunkPair objects that have been add()ed to this Match |
278
|
|
|
|
|
|
|
Returns : a List of ChunkPair objects |
279
|
|
|
|
|
|
|
Args : none |
280
|
|
|
|
|
|
|
|
281
|
|
|
|
|
|
|
=cut |
282
|
|
|
|
|
|
|
|
283
|
|
|
|
|
|
|
sub pairs |
284
|
|
|
|
|
|
|
{ |
285
|
0
|
|
|
0
|
1
|
0
|
return $_[0]->{pairs}; |
286
|
|
|
|
|
|
|
} |
287
|
|
|
|
|
|
|
|
288
|
|
|
|
|
|
|
=head2 score |
289
|
|
|
|
|
|
|
|
290
|
|
|
|
|
|
|
Title : score |
291
|
|
|
|
|
|
|
Usage : $acc = $seq->score; |
292
|
|
|
|
|
|
|
Function: The score of this Match - longer match gives a higher score |
293
|
|
|
|
|
|
|
Returns : int - currently returns the total number of lines this match |
294
|
|
|
|
|
|
|
covers in both files |
295
|
|
|
|
|
|
|
Args : None |
296
|
|
|
|
|
|
|
|
297
|
|
|
|
|
|
|
=cut |
298
|
|
|
|
|
|
|
|
299
|
|
|
|
|
|
|
sub score |
300
|
|
|
|
|
|
|
{ |
301
|
2
|
|
|
2
|
1
|
10
|
my $self = shift; |
302
|
2
|
|
|
|
|
14
|
return $self->{max1} - $self->{min1} + $self->{max2} - $self->{min2} + 2; |
303
|
|
|
|
|
|
|
} |
304
|
|
|
|
|
|
|
|
305
|
|
|
|
|
|
|
|
306
|
|
|
|
|
|
|
=head2 as_string |
307
|
|
|
|
|
|
|
|
308
|
|
|
|
|
|
|
Title : as_string |
309
|
|
|
|
|
|
|
Usage : my $str = $match->as_string |
310
|
|
|
|
|
|
|
Function: return a string representation of this Match |
311
|
|
|
|
|
|
|
Args : none |
312
|
|
|
|
|
|
|
|
313
|
|
|
|
|
|
|
=cut |
314
|
|
|
|
|
|
|
|
315
|
|
|
|
|
|
|
sub as_string |
316
|
|
|
|
|
|
|
{ |
317
|
35
|
|
|
35
|
1
|
55
|
my $self = shift; |
318
|
|
|
|
|
|
|
|
319
|
35
|
|
|
|
|
76
|
return $self->min1 . ".." . $self->max1 . "==" . $self->min2 . ".." . $self->max2; |
320
|
|
|
|
|
|
|
} |
321
|
|
|
|
|
|
|
|
322
|
|
|
|
|
|
|
=head1 AUTHOR |
323
|
|
|
|
|
|
|
|
324
|
|
|
|
|
|
|
Kim Rutherford |
325
|
|
|
|
|
|
|
|
326
|
|
|
|
|
|
|
=head1 COPYRIGHT & LICENSE |
327
|
|
|
|
|
|
|
|
328
|
|
|
|
|
|
|
Copyright 2005,2006 Kim Rutherford. All rights reserved. |
329
|
|
|
|
|
|
|
|
330
|
|
|
|
|
|
|
This program is free software; you can redistribute it and/or modify it |
331
|
|
|
|
|
|
|
under the same terms as Perl itself. |
332
|
|
|
|
|
|
|
|
333
|
|
|
|
|
|
|
=head1 DISCLAIMER |
334
|
|
|
|
|
|
|
|
335
|
|
|
|
|
|
|
This module is provided "as is" without warranty of any kind. It |
336
|
|
|
|
|
|
|
may redistributed under the same conditions as Perl itself. |
337
|
|
|
|
|
|
|
|
338
|
|
|
|
|
|
|
=cut |
339
|
|
|
|
|
|
|
|
340
|
|
|
|
|
|
|
1; |