line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
=head1 NAME |
2
|
|
|
|
|
|
|
|
3
|
|
|
|
|
|
|
Text::NSP::Measures::4D - Perl module that provides basic framework for |
4
|
|
|
|
|
|
|
building measure of association for 4-grams. |
5
|
|
|
|
|
|
|
|
6
|
|
|
|
|
|
|
=head1 SYNOPSIS |
7
|
|
|
|
|
|
|
|
8
|
|
|
|
|
|
|
This module can be used as a foundation for building 4-dimensional |
9
|
|
|
|
|
|
|
measures of association that can then be used by statistic.pl. In |
10
|
|
|
|
|
|
|
particular this module provides methods that give convenient access to |
11
|
|
|
|
|
|
|
4-d (i.e., 4-gram) frequency counts as created by count.pl, as well as |
12
|
|
|
|
|
|
|
some degree of error handling that verifies the data. |
13
|
|
|
|
|
|
|
|
14
|
|
|
|
|
|
|
=head3 Basic Usage |
15
|
|
|
|
|
|
|
|
16
|
|
|
|
|
|
|
use Text::NSP::Measures::4D::MI::ll; |
17
|
|
|
|
|
|
|
|
18
|
|
|
|
|
|
|
$ll_value = calculateStatistic( |
19
|
|
|
|
|
|
|
n1111=>8, |
20
|
|
|
|
|
|
|
n1ppp=>306, |
21
|
|
|
|
|
|
|
np1pp=>83, |
22
|
|
|
|
|
|
|
npp1p=>83, |
23
|
|
|
|
|
|
|
nppp1=>57, |
24
|
|
|
|
|
|
|
n11pp=>8, |
25
|
|
|
|
|
|
|
n1p1p=>8, |
26
|
|
|
|
|
|
|
n1pp1=>8, |
27
|
|
|
|
|
|
|
np11p=>83, |
28
|
|
|
|
|
|
|
np1p1=>56, |
29
|
|
|
|
|
|
|
npp11=>56, |
30
|
|
|
|
|
|
|
n111p=>8, |
31
|
|
|
|
|
|
|
n11p1=>8, |
32
|
|
|
|
|
|
|
n1p11=>8, |
33
|
|
|
|
|
|
|
np111=>56, |
34
|
|
|
|
|
|
|
npppp=>15180); |
35
|
|
|
|
|
|
|
|
36
|
|
|
|
|
|
|
if( ($errorCode = getErrorCode())) |
37
|
|
|
|
|
|
|
{ |
38
|
|
|
|
|
|
|
print STDERR $erroCode." - ".getErrorMessage()."\n"; |
39
|
|
|
|
|
|
|
} |
40
|
|
|
|
|
|
|
else |
41
|
|
|
|
|
|
|
{ |
42
|
|
|
|
|
|
|
print getStatisticName."value for 4-gram is ".$ll_value."\n"; |
43
|
|
|
|
|
|
|
} |
44
|
|
|
|
|
|
|
|
45
|
|
|
|
|
|
|
=head1 DESCRIPTION |
46
|
|
|
|
|
|
|
|
47
|
|
|
|
|
|
|
The methods in this module retrieve observed 4-gram frequency counts and |
48
|
|
|
|
|
|
|
marginal totals, and also compute expected values. They also provide |
49
|
|
|
|
|
|
|
support for error checking of the output produced by count.pl. These |
50
|
|
|
|
|
|
|
methods are used in all the 4-gram (4d) measure modules provided in NSP. |
51
|
|
|
|
|
|
|
If you are writing your own 4d measure, you can use these methods as well. |
52
|
|
|
|
|
|
|
|
53
|
|
|
|
|
|
|
With 4-gram or 4d measures we use a 4x4 contingency table to store the |
54
|
|
|
|
|
|
|
frequency counts associated with each word in the trigram, as well as the |
55
|
|
|
|
|
|
|
number of times the trigram occurs. The notation we employ is as follows: |
56
|
|
|
|
|
|
|
|
57
|
|
|
|
|
|
|
Marginal Frequencies: |
58
|
|
|
|
|
|
|
|
59
|
|
|
|
|
|
|
n1ppp = the number of ngrams where the first word is word1. |
60
|
|
|
|
|
|
|
np1pp = the number of ngrams where the second word is word2. |
61
|
|
|
|
|
|
|
npp1p = the number of ngrams where the third word is word3 |
62
|
|
|
|
|
|
|
nppp1 = the number of ngrams where the fourth word is word4 |
63
|
|
|
|
|
|
|
n2ppp = the number of ngrams where the first word is not word1. |
64
|
|
|
|
|
|
|
np2pp = the number of ngrams where the second word is not word2. |
65
|
|
|
|
|
|
|
npp2p = the number of ngrams where the third word is not word3. |
66
|
|
|
|
|
|
|
nppp2 = the number of ngrams where the fourth words is not word4 |
67
|
|
|
|
|
|
|
|
68
|
|
|
|
|
|
|
Observed Frequencies: |
69
|
|
|
|
|
|
|
|
70
|
|
|
|
|
|
|
n1111 = number of times word1, word2 and word3 occur together in |
71
|
|
|
|
|
|
|
their respective positions, joint frequency. |
72
|
|
|
|
|
|
|
n1112 = number of times word1, word 2 and word3 occur in their respective |
73
|
|
|
|
|
|
|
positions but word4 does not. |
74
|
|
|
|
|
|
|
n1121 = number of times word1, word2 and word4 occur in their respective |
75
|
|
|
|
|
|
|
positions but word3 does not. |
76
|
|
|
|
|
|
|
n1122 = number of times word1 and word2 occur in their repsective positions |
77
|
|
|
|
|
|
|
but word3 and word4 do not. |
78
|
|
|
|
|
|
|
n1211 = number of times word1, word3 and word4 occur in their respective |
79
|
|
|
|
|
|
|
positions but word2 does not. |
80
|
|
|
|
|
|
|
n1212 = number of times word1 and word3 occur in their respective positions |
81
|
|
|
|
|
|
|
but word2 and word4 do not. |
82
|
|
|
|
|
|
|
n1221 = number of times word1 and word4 occur in their respective positions |
83
|
|
|
|
|
|
|
but word2 and word3 do not |
84
|
|
|
|
|
|
|
n1222 = number of times word1 occurs in its respective position but word2, |
85
|
|
|
|
|
|
|
word3 and word4 do not. |
86
|
|
|
|
|
|
|
n2111 = number of times word2, word3 and word4 occur in their respective |
87
|
|
|
|
|
|
|
positions but word1 does not. |
88
|
|
|
|
|
|
|
n2112 = number of times word2 and word3 occur in their respective positions |
89
|
|
|
|
|
|
|
but word1 and word4 do not. |
90
|
|
|
|
|
|
|
n2121 = number of times word2 and word4 occur in their respective positions |
91
|
|
|
|
|
|
|
but word1 and word3 do not. |
92
|
|
|
|
|
|
|
n2122 = number of times word2 occurs in its respective position but word1, |
93
|
|
|
|
|
|
|
word3 and word4 do not. |
94
|
|
|
|
|
|
|
n2211 = number of times word3 and word4 occur in their respective positions |
95
|
|
|
|
|
|
|
but word1 and word2 do not. |
96
|
|
|
|
|
|
|
n2212 = number of times word3 occurs in its respective position but word1, |
97
|
|
|
|
|
|
|
word2 and word4 do not. |
98
|
|
|
|
|
|
|
n2221 = number of times word4 occurs in its respective position but word1, |
99
|
|
|
|
|
|
|
word2, and word3 do not. |
100
|
|
|
|
|
|
|
n2222 = number of times neither word1, word2, word3 or word4 occur in their |
101
|
|
|
|
|
|
|
respective positions. |
102
|
|
|
|
|
|
|
|
103
|
|
|
|
|
|
|
Expected Frequencies: |
104
|
|
|
|
|
|
|
|
105
|
|
|
|
|
|
|
m1111 = expected number of times word1, word2 and word3 occur together in |
106
|
|
|
|
|
|
|
their respective positions, joint frequency. |
107
|
|
|
|
|
|
|
m1112 = expected number of times word1, word 2 and word3 occur in their respective |
108
|
|
|
|
|
|
|
positions but word4 does not. |
109
|
|
|
|
|
|
|
m1121 = expected number of times word1, word2 and word4 occur in their respective |
110
|
|
|
|
|
|
|
positions but word3 does not. |
111
|
|
|
|
|
|
|
m1122 = expected number of times word1 and word2 occur in their repsective positions |
112
|
|
|
|
|
|
|
but word3 and word4 do not. |
113
|
|
|
|
|
|
|
m1211 = expected number of times word1, word3 and word4 occur in their respective |
114
|
|
|
|
|
|
|
positions but word2 does not. |
115
|
|
|
|
|
|
|
m1212 = expected number of times word1 and word3 occur in their respective positions |
116
|
|
|
|
|
|
|
but word2 and word4 do not. |
117
|
|
|
|
|
|
|
m1221 = expected number of times word1 and word4 occur in their respective positions |
118
|
|
|
|
|
|
|
but word2 and word3 do not |
119
|
|
|
|
|
|
|
m1222 = expected number of times word1 occurs in its respective position but word2, |
120
|
|
|
|
|
|
|
word3 and word4 do not. |
121
|
|
|
|
|
|
|
m2111 = expected number of times word2, word3 and word4 occur in their respective |
122
|
|
|
|
|
|
|
positions but word1 does not. |
123
|
|
|
|
|
|
|
m2112 = expected number of times word2 and word3 occur in their respective positions |
124
|
|
|
|
|
|
|
but word1 and word4 do not. |
125
|
|
|
|
|
|
|
m2121 = expected number of times word2 and word4 occur in their respective positions |
126
|
|
|
|
|
|
|
but word1 and word3 do not. |
127
|
|
|
|
|
|
|
m2122 = expected number of times word2 occurs in its respective position but word1, |
128
|
|
|
|
|
|
|
word3 and word4 do not. |
129
|
|
|
|
|
|
|
m2211 = expected number of times word3 and word4 occur in their respective positions |
130
|
|
|
|
|
|
|
but word1 and word2 do not. |
131
|
|
|
|
|
|
|
m2212 = expected number of times word3 occurs in its respective position but word1, |
132
|
|
|
|
|
|
|
word2 and word4 do not. |
133
|
|
|
|
|
|
|
m2221 = expected number of times word4 occurs in its respective position but word1, |
134
|
|
|
|
|
|
|
word2, and word3 do not. |
135
|
|
|
|
|
|
|
m2222 = expected number of times neither word1, word2, word3 or word4 occur in their |
136
|
|
|
|
|
|
|
respective positions. |
137
|
|
|
|
|
|
|
=head2 Methods |
138
|
|
|
|
|
|
|
|
139
|
|
|
|
|
|
|
=over |
140
|
|
|
|
|
|
|
|
141
|
|
|
|
|
|
|
=cut |
142
|
|
|
|
|
|
|
|
143
|
|
|
|
|
|
|
|
144
|
|
|
|
|
|
|
package Text::NSP::Measures::4D; |
145
|
|
|
|
|
|
|
|
146
|
|
|
|
|
|
|
|
147
|
2
|
|
|
2
|
|
1173
|
use Text::NSP::Measures; |
|
2
|
|
|
|
|
5
|
|
|
2
|
|
|
|
|
310
|
|
148
|
2
|
|
|
2
|
|
10
|
use strict; |
|
2
|
|
|
|
|
4
|
|
|
2
|
|
|
|
|
41
|
|
149
|
2
|
|
|
2
|
|
10
|
use Carp; |
|
2
|
|
|
|
|
4
|
|
|
2
|
|
|
|
|
100
|
|
150
|
2
|
|
|
2
|
|
10
|
use warnings; |
|
2
|
|
|
|
|
4
|
|
|
2
|
|
|
|
|
27596
|
|
151
|
|
|
|
|
|
|
require Exporter; |
152
|
|
|
|
|
|
|
|
153
|
|
|
|
|
|
|
|
154
|
|
|
|
|
|
|
our ($VERSION, @ISA, $marginals, @EXPORT); |
155
|
|
|
|
|
|
|
our ($n1111, $n1112, $n1121, $n1122, $n1211, $n1212, $n1221, $n1222); |
156
|
|
|
|
|
|
|
our ($n2111, $n2112, $n2121, $n2122, $n2211, $n2212, $n2221, $n2222); |
157
|
|
|
|
|
|
|
our ($m1111, $m1112, $m1121, $m1122, $m1211, $m1212, $m1221, $m1222); |
158
|
|
|
|
|
|
|
our ($m2111, $m2112, $m2121, $m2122, $m2211, $m2212, $m2221, $m2222); |
159
|
|
|
|
|
|
|
our ($nppp1, $npp1p, $npp11, $np1pp, $np1p1, $np11p, $np111, $n1ppp); |
160
|
|
|
|
|
|
|
our ($n1pp1, $n1p1p, $n1p11, $n11pp, $n11p1, $n111p, $npppp); |
161
|
|
|
|
|
|
|
our ($nppp2, $npp2p, $npp22, $np2pp, $np2p2, $np22p, $np222, $n2ppp); |
162
|
|
|
|
|
|
|
our ($n2pp2, $n2p2p, $n2p22, $n22pp, $n22p2, $n222p); |
163
|
|
|
|
|
|
|
our ($np112, $np121, $np122, $np211, $np212, $np221); |
164
|
|
|
|
|
|
|
our ($expected_values); |
165
|
|
|
|
|
|
|
our ($n2p1p, $n1p2p, $n2pp1, $n1pp2, $npp21, $npp12, $n21pp, $n12pp); |
166
|
|
|
|
|
|
|
our ($n22p1, $n21p2, $n21p1, $n12p2, $n12p1, $n11p2, $n2p21, $n2p11); |
167
|
|
|
|
|
|
|
our ($n2p12, $n1p22, $n1p21, $n1p12, $np21p, $np12p, $np2p1, $np1p2); |
168
|
|
|
|
|
|
|
our ($n221p, $n212p, $n211p, $n122p, $n121p, $n112p); |
169
|
|
|
|
|
|
|
@ISA = qw(Exporter); |
170
|
|
|
|
|
|
|
|
171
|
|
|
|
|
|
|
@EXPORT = qw(initializeStatistic calculateStatistic |
172
|
|
|
|
|
|
|
getErrorCode getErrorMessage getStatisticName |
173
|
|
|
|
|
|
|
$n1111 $n1112 $n1121 $n1122 $n1211 $n1212 $n1221 $n1222 |
174
|
|
|
|
|
|
|
$n2111 $n2112 $n2121 $n2122 $n2211 $n2212 $n2221 $n2222 |
175
|
|
|
|
|
|
|
$m1111 $m1112 $m1121 $m1122 $m1211 $m1212 $m1221 $m1222 |
176
|
|
|
|
|
|
|
$m2111 $m2112 $m2121 $m2122 $m2211 $m2212 $m2221 $m2222 |
177
|
|
|
|
|
|
|
$nppp1 $npp1p $npp11 $np1pp $np1p1 $np11p $np111 $n1ppp |
178
|
|
|
|
|
|
|
$n1pp1 $n1p1p $n1p11 $n11pp $n11p1 $n111p $npppp |
179
|
|
|
|
|
|
|
$nppp2 $npp2p $npp22 $np2pp $np2p2 $np22p $np222 $n2ppp |
180
|
|
|
|
|
|
|
$n2pp2 $n2p2p $n2p22 $n22pp $n22p2 $n222p |
181
|
|
|
|
|
|
|
$np112 $np121 $np122 $np211 $np212 $np221 $expected_values |
182
|
|
|
|
|
|
|
$errorCodeNumber $errorMessage); |
183
|
|
|
|
|
|
|
|
184
|
|
|
|
|
|
|
$VERSION = '0.97'; |
185
|
|
|
|
|
|
|
|
186
|
|
|
|
|
|
|
|
187
|
|
|
|
|
|
|
=item computeObservedValues($count_values) - A method to |
188
|
|
|
|
|
|
|
compute observed values, and also to verify that the |
189
|
|
|
|
|
|
|
computed Observed values are correct, That is they are |
190
|
|
|
|
|
|
|
positive, less than the marginal totals and the total |
191
|
|
|
|
|
|
|
bigram count. |
192
|
|
|
|
|
|
|
|
193
|
|
|
|
|
|
|
INPUT PARAMS : $count_values .. Reference to an hash consisting |
194
|
|
|
|
|
|
|
of the count values passed to |
195
|
|
|
|
|
|
|
the calculateStatistic() method. |
196
|
|
|
|
|
|
|
|
197
|
|
|
|
|
|
|
RETURN VALUES : 1/undef ..returns '1' to indicate success |
198
|
|
|
|
|
|
|
and an undefined(NULL) value to indicate |
199
|
|
|
|
|
|
|
failure. |
200
|
|
|
|
|
|
|
|
201
|
|
|
|
|
|
|
=cut |
202
|
|
|
|
|
|
|
|
203
|
|
|
|
|
|
|
sub computeObservedValues |
204
|
|
|
|
|
|
|
{ |
205
|
16
|
|
|
16
|
1
|
20
|
my ($values) = @_; |
206
|
|
|
|
|
|
|
|
207
|
16
|
|
|
|
|
21
|
$n1111=$values->{n1111}; |
208
|
16
|
|
|
|
|
21
|
$n1ppp=$values->{n1ppp}; |
209
|
16
|
|
|
|
|
20
|
$np1pp=$values->{np1pp}; |
210
|
16
|
|
|
|
|
18
|
$npp1p=$values->{npp1p}; |
211
|
16
|
|
|
|
|
19
|
$nppp1=$values->{nppp1}; |
212
|
16
|
|
|
|
|
20
|
$n11pp=$values->{n11pp}; |
213
|
16
|
|
|
|
|
21
|
$n1p1p=$values->{n1p1p}; |
214
|
16
|
|
|
|
|
21
|
$n1pp1=$values->{n1pp1}; |
215
|
16
|
|
|
|
|
18
|
$np11p=$values->{np11p}; |
216
|
16
|
|
|
|
|
17
|
$np1p1=$values->{np1p1}; |
217
|
16
|
|
|
|
|
18
|
$npp11=$values->{npp11}; |
218
|
16
|
|
|
|
|
17
|
$n111p=$values->{n111p}; |
219
|
16
|
|
|
|
|
17
|
$n11p1=$values->{n11p1}; |
220
|
16
|
|
|
|
|
19
|
$n1p11=$values->{n1p11}; |
221
|
16
|
|
|
|
|
17
|
$np111=$values->{np111}; |
222
|
16
|
|
|
|
|
21
|
$npppp=$values->{npppp}; |
223
|
|
|
|
|
|
|
|
224
|
|
|
|
|
|
|
# we do not have the model fully implemented yet |
225
|
|
|
|
|
|
|
#$expected_values=$values->{expected_values}; |
226
|
|
|
|
|
|
|
|
227
|
|
|
|
|
|
|
# Check that all the values are defined |
228
|
16
|
100
|
|
|
|
34
|
if(!defined $values->{n1111}) |
229
|
|
|
|
|
|
|
{ |
230
|
1
|
|
|
|
|
2
|
$errorMessage = "Required 4-gram (1,1,1,1) not passed"; |
231
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
232
|
1
|
|
|
|
|
3
|
return; |
233
|
|
|
|
|
|
|
} |
234
|
15
|
100
|
|
|
|
28
|
if(!defined $values->{n1ppp}) |
235
|
|
|
|
|
|
|
{ |
236
|
1
|
|
|
|
|
2
|
$errorMessage = "Required 4-gram (1,p,p,p) not passed"; |
237
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
238
|
1
|
|
|
|
|
3
|
return; |
239
|
|
|
|
|
|
|
} |
240
|
14
|
100
|
|
|
|
28
|
if(!defined $values->{np1pp}) |
241
|
|
|
|
|
|
|
{ |
242
|
1
|
|
|
|
|
2
|
$errorMessage = "Required 4-gram (p,1,p,p) not passed"; |
243
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
244
|
1
|
|
|
|
|
3
|
return; |
245
|
|
|
|
|
|
|
} |
246
|
13
|
50
|
|
|
|
22
|
if(!defined $values->{npp1p}) |
247
|
|
|
|
|
|
|
{ |
248
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (p,p,1,p) not passed"; |
249
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
250
|
0
|
|
|
|
|
0
|
return; |
251
|
|
|
|
|
|
|
} |
252
|
13
|
100
|
|
|
|
26
|
if(!defined $values->{nppp1}) |
253
|
|
|
|
|
|
|
{ |
254
|
1
|
|
|
|
|
2
|
$errorMessage = "Required 4-gram (p,p,p,1) not passed"; |
255
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
256
|
1
|
|
|
|
|
3
|
return; |
257
|
|
|
|
|
|
|
} |
258
|
12
|
50
|
|
|
|
21
|
if(!defined $values->{n11pp}) |
259
|
|
|
|
|
|
|
{ |
260
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (1,1,p,p) not passed"; |
261
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
262
|
0
|
|
|
|
|
0
|
return; |
263
|
|
|
|
|
|
|
} |
264
|
12
|
50
|
|
|
|
20
|
if(!defined $values->{n1p1p}) |
265
|
|
|
|
|
|
|
{ |
266
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (1,p,1,p) not passed"; |
267
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
268
|
0
|
|
|
|
|
0
|
return; |
269
|
|
|
|
|
|
|
} |
270
|
12
|
50
|
|
|
|
21
|
if(!defined $values->{n1pp1}) |
271
|
|
|
|
|
|
|
{ |
272
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (1,p,p,1) not passed"; |
273
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
274
|
0
|
|
|
|
|
0
|
return; |
275
|
|
|
|
|
|
|
} |
276
|
12
|
50
|
|
|
|
20
|
if(!defined $values->{np11p}) |
277
|
|
|
|
|
|
|
{ |
278
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (p,1,1,p) not passed"; |
279
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
280
|
0
|
|
|
|
|
0
|
return; |
281
|
|
|
|
|
|
|
} |
282
|
12
|
50
|
|
|
|
28
|
if(!defined $values->{np1p1}) |
283
|
|
|
|
|
|
|
{ |
284
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (p,1,p,1) not passed"; |
285
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
286
|
0
|
|
|
|
|
0
|
return; |
287
|
|
|
|
|
|
|
} |
288
|
12
|
100
|
|
|
|
22
|
if(!defined $values->{npp11}) |
289
|
|
|
|
|
|
|
{ |
290
|
1
|
|
|
|
|
2
|
$errorMessage = "Required 4-gram (p,p,1,1) not passed"; |
291
|
1
|
|
|
|
|
1
|
$errorCodeNumber = 200; |
292
|
1
|
|
|
|
|
4
|
return; |
293
|
|
|
|
|
|
|
} |
294
|
11
|
50
|
|
|
|
18
|
if(!defined $values->{n111p}) |
295
|
|
|
|
|
|
|
{ |
296
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (1,1,1,p) not passed"; |
297
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
298
|
0
|
|
|
|
|
0
|
return; |
299
|
|
|
|
|
|
|
} |
300
|
11
|
100
|
|
|
|
22
|
if(!defined $values->{n11p1}) |
301
|
|
|
|
|
|
|
{ |
302
|
1
|
|
|
|
|
9
|
$errorMessage = "Required 4-gram (1,1,p,1) not passed"; |
303
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
304
|
1
|
|
|
|
|
3
|
return; |
305
|
|
|
|
|
|
|
} |
306
|
10
|
50
|
|
|
|
18
|
if(!defined $values->{n1p11}) |
307
|
|
|
|
|
|
|
{ |
308
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (1,p,1,1) not passed"; |
309
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
310
|
0
|
|
|
|
|
0
|
return; |
311
|
|
|
|
|
|
|
} |
312
|
10
|
100
|
|
|
|
19
|
if(!defined $values->{np111}) |
313
|
|
|
|
|
|
|
{ |
314
|
1
|
|
|
|
|
2
|
$errorMessage = "Required 4-gram (p,1,1,1) not passed"; |
315
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
316
|
1
|
|
|
|
|
3
|
return; |
317
|
|
|
|
|
|
|
} |
318
|
9
|
100
|
|
|
|
17
|
if(!defined $values->{npppp}) |
319
|
|
|
|
|
|
|
{ |
320
|
1
|
|
|
|
|
3
|
$errorMessage = "Required 4-gram (p,p,p,p) not passed"; |
321
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
322
|
1
|
|
|
|
|
3
|
return; |
323
|
|
|
|
|
|
|
} |
324
|
|
|
|
|
|
|
|
325
|
|
|
|
|
|
|
# n1111 should be greater than equal to zero |
326
|
8
|
100
|
|
|
|
17
|
if ($n1111 <= 0) { |
327
|
1
|
|
|
|
|
5
|
$errorMessage = "Frequency value ($n1111) must not be negative."; |
328
|
1
|
|
|
|
|
1
|
$errorCodeNumber = 201; return; |
|
1
|
|
|
|
|
3
|
|
329
|
|
|
|
|
|
|
} |
330
|
|
|
|
|
|
|
|
331
|
|
|
|
|
|
|
# n1111 frequency should be less than or equal to total 4grams |
332
|
7
|
100
|
|
|
|
22
|
if ($n1111 > $npppp) { |
333
|
1
|
|
|
|
|
3
|
$errorMessage = "Frequency value ($n1111) must not exceed total number of 4grams."; |
334
|
1
|
|
|
|
|
1
|
$errorCodeNumber = 201; return; |
|
1
|
|
|
|
|
4
|
|
335
|
|
|
|
|
|
|
} |
336
|
|
|
|
|
|
|
|
337
|
|
|
|
|
|
|
# joint frequency n1111 should be less than or equal to the marginal totals |
338
|
6
|
100
|
66
|
|
|
48
|
if ($n1111 > $n1ppp || $n1111 > $np1pp || $n1111 > $npp1p || $n1111 > $nppp1) { |
|
|
|
66
|
|
|
|
|
|
|
|
66
|
|
|
|
|
339
|
2
|
|
|
|
|
6
|
$errorMessage = "Frequency value of ngram ($n1111) must not exceed the marginal totals."; |
340
|
2
|
|
|
|
|
3
|
$errorCodeNumber = 202; return; |
|
2
|
|
|
|
|
6
|
|
341
|
|
|
|
|
|
|
} |
342
|
|
|
|
|
|
|
|
343
|
|
|
|
|
|
|
# n1ppp should be greater than equal to zero |
344
|
4
|
50
|
|
|
|
7
|
if ($n1ppp <= 0) { |
345
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1ppp) must not be negative."; |
346
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
347
|
|
|
|
|
|
|
} |
348
|
|
|
|
|
|
|
|
349
|
|
|
|
|
|
|
# n1ppp frequency should be less than or equal to total 4grams |
350
|
4
|
50
|
|
|
|
9
|
if ($n1ppp > $npppp) { |
351
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1ppp) must not exceed total number of 4grams."; |
352
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
353
|
|
|
|
|
|
|
} |
354
|
|
|
|
|
|
|
|
355
|
|
|
|
|
|
|
# np1pp should be greater than equal to zero |
356
|
4
|
50
|
|
|
|
8
|
if ($np1pp <= 0) { |
357
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np1pp) must not be negative."; |
358
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
359
|
|
|
|
|
|
|
} |
360
|
|
|
|
|
|
|
|
361
|
|
|
|
|
|
|
# np1pp frequency should be less than or equal to total 4grams |
362
|
4
|
50
|
|
|
|
9
|
if ($np1pp > $npppp) { |
363
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np1pp) must not exceed total number of 4grams."; |
364
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
365
|
|
|
|
|
|
|
} |
366
|
|
|
|
|
|
|
|
367
|
|
|
|
|
|
|
# npp1p should be greater than equal to zero |
368
|
4
|
50
|
|
|
|
7
|
if ($npp1p <= 0) { |
369
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($npp1p) must not be negative."; |
370
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
371
|
|
|
|
|
|
|
} |
372
|
|
|
|
|
|
|
|
373
|
|
|
|
|
|
|
# npp1p frequency should be less than or equal to total 4grams |
374
|
4
|
50
|
|
|
|
8
|
if ($npp1p > $npppp) { |
375
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($npp1p) must not exceed total number of 4grams."; |
376
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
377
|
|
|
|
|
|
|
} |
378
|
|
|
|
|
|
|
|
379
|
|
|
|
|
|
|
# nppp1 should be greater than equal to zero |
380
|
4
|
50
|
|
|
|
7
|
if ($nppp1 <= 0) { |
381
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($nppp1) must not be negative."; |
382
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
383
|
|
|
|
|
|
|
} |
384
|
|
|
|
|
|
|
|
385
|
|
|
|
|
|
|
# nppp1 frequency should be less than or equal to total 4grams |
386
|
4
|
100
|
|
|
|
9
|
if ($nppp1 > $npppp) { |
387
|
1
|
|
|
|
|
4
|
$errorMessage = "Frequency value ($nppp1) must not exceed total number of 4grams."; |
388
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 201; return; |
|
1
|
|
|
|
|
4
|
|
389
|
|
|
|
|
|
|
} |
390
|
|
|
|
|
|
|
|
391
|
|
|
|
|
|
|
# n11pp should be greater than equal to zero |
392
|
3
|
50
|
|
|
|
6
|
if ($n11pp <= 0) { |
393
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n11pp) must not be negative."; |
394
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
395
|
|
|
|
|
|
|
} |
396
|
|
|
|
|
|
|
|
397
|
|
|
|
|
|
|
# n11pp frequency should be less than or equal to total 4grams |
398
|
3
|
50
|
|
|
|
11
|
if ($n11pp > $npppp) { |
399
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n11pp) must not exceed total number of 4grams."; |
400
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
401
|
|
|
|
|
|
|
} |
402
|
|
|
|
|
|
|
|
403
|
|
|
|
|
|
|
# n1p1p should be greater than equal to zero |
404
|
3
|
50
|
|
|
|
6
|
if ($n1p1p <= 0) { |
405
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1p1p) must not be negative."; |
406
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
407
|
|
|
|
|
|
|
} |
408
|
|
|
|
|
|
|
|
409
|
|
|
|
|
|
|
# n1p1p frequency should be less than or equal to total 4grams |
410
|
3
|
50
|
|
|
|
8
|
if ($n1p1p > $npppp) { |
411
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1p1p) must not exceed total number of 4grams."; |
412
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
413
|
|
|
|
|
|
|
} |
414
|
|
|
|
|
|
|
|
415
|
|
|
|
|
|
|
# n1pp1 should be greater than equal to zero |
416
|
3
|
50
|
|
|
|
9
|
if ($n1pp1 <= 0) { |
417
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1pp1) must not be negative."; |
418
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
419
|
|
|
|
|
|
|
} |
420
|
|
|
|
|
|
|
|
421
|
|
|
|
|
|
|
# n1pp1 frequency should be less than or equal to total 4grams |
422
|
3
|
50
|
|
|
|
7
|
if ($n1pp1 > $npppp) { |
423
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1pp1) must not exceed total number of 4grams."; |
424
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
425
|
|
|
|
|
|
|
} |
426
|
|
|
|
|
|
|
|
427
|
|
|
|
|
|
|
# np11p should be greater than equal to zero |
428
|
3
|
50
|
|
|
|
5
|
if ($np11p <= 0) { |
429
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np11p) must not be negative."; |
430
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
431
|
|
|
|
|
|
|
} |
432
|
|
|
|
|
|
|
|
433
|
|
|
|
|
|
|
# np11p frequency should be less than or equal to total 4grams |
434
|
3
|
50
|
|
|
|
7
|
if ($np11p > $npppp) { |
435
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np11p) must not exceed total number of 4grams."; |
436
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
437
|
|
|
|
|
|
|
} |
438
|
|
|
|
|
|
|
|
439
|
|
|
|
|
|
|
# np1p1 should be greater than equal to zero |
440
|
3
|
50
|
|
|
|
5
|
if ($np1p1 <= 0) { |
441
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np1p1) must not be negative."; |
442
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
443
|
|
|
|
|
|
|
} |
444
|
|
|
|
|
|
|
|
445
|
|
|
|
|
|
|
# np1p1 frequency should be less than or equal to total 4grams |
446
|
3
|
50
|
|
|
|
7
|
if ($np1p1 > $npppp) { |
447
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np1p1) must not exceed total number of 4grams."; |
448
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
449
|
|
|
|
|
|
|
} |
450
|
|
|
|
|
|
|
|
451
|
|
|
|
|
|
|
# npp11 should be greater than equal to zero |
452
|
3
|
50
|
|
|
|
5
|
if ($npp11 <= 0) { |
453
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($npp11) must not be negative."; |
454
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
455
|
|
|
|
|
|
|
} |
456
|
|
|
|
|
|
|
|
457
|
|
|
|
|
|
|
# npp11 frequency should be less than or equal to total 4grams |
458
|
3
|
50
|
|
|
|
8
|
if ($npp11 > $npppp) { |
459
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($npp11) must not exceed total number of 4grams."; |
460
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
461
|
|
|
|
|
|
|
} |
462
|
|
|
|
|
|
|
|
463
|
|
|
|
|
|
|
# n111p should be greater than equal to zero |
464
|
3
|
50
|
|
|
|
5
|
if ($n111p <= 0) { |
465
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n111p) must not be negative."; |
466
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
467
|
|
|
|
|
|
|
} |
468
|
|
|
|
|
|
|
|
469
|
|
|
|
|
|
|
# n111p frequency should be less than or equal to total 4grams |
470
|
3
|
50
|
|
|
|
7
|
if ($n111p > $npppp) { |
471
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n111p) must not exceed total number of 4grams."; |
472
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
473
|
|
|
|
|
|
|
} |
474
|
|
|
|
|
|
|
|
475
|
|
|
|
|
|
|
# n11p1 should be greater than equal to zero |
476
|
3
|
50
|
|
|
|
6
|
if ($n11p1 <= 0) { |
477
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n11p1) must not be negative."; |
478
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
479
|
|
|
|
|
|
|
} |
480
|
|
|
|
|
|
|
|
481
|
|
|
|
|
|
|
# n11p1 frequency should be less than or equal to total 4grams |
482
|
3
|
50
|
|
|
|
7
|
if ($n11p1 > $npppp) { |
483
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n11p1) must not exceed total number of 4grams."; |
484
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
485
|
|
|
|
|
|
|
} |
486
|
|
|
|
|
|
|
|
487
|
|
|
|
|
|
|
# n1p11 should be greater than equal to zero |
488
|
3
|
50
|
|
|
|
6
|
if ($n1p11 <= 0) { |
489
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1p11) must not be negative."; |
490
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
491
|
|
|
|
|
|
|
} |
492
|
|
|
|
|
|
|
|
493
|
|
|
|
|
|
|
# n1p11 frequency should be less than or equal to total 4grams |
494
|
3
|
50
|
|
|
|
7
|
if ($n1p11 > $npppp) { |
495
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1p11) must not exceed total number of 4grams."; |
496
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
497
|
|
|
|
|
|
|
} |
498
|
|
|
|
|
|
|
|
499
|
|
|
|
|
|
|
# np111 should be greater than equal to zero |
500
|
3
|
50
|
|
|
|
5
|
if ($np111 <= 0) { |
501
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np111) must not be negative."; |
502
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
503
|
|
|
|
|
|
|
} |
504
|
|
|
|
|
|
|
|
505
|
|
|
|
|
|
|
# np111 frequency should be less than or equal to total 4grams |
506
|
3
|
50
|
|
|
|
7
|
if ($np111 > $npppp) { |
507
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np111) must not exceed total number of 4grams."; |
508
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
0
|
|
|
|
|
0
|
|
509
|
|
|
|
|
|
|
} |
510
|
|
|
|
|
|
|
|
511
|
|
|
|
|
|
|
|
512
|
|
|
|
|
|
|
# observed |
513
|
3
|
|
|
|
|
8
|
$n1112=$n111p-$n1111; |
514
|
3
|
|
|
|
|
9
|
$n1121=$n11p1-$n1111; |
515
|
|
|
|
|
|
|
|
516
|
|
|
|
|
|
|
|
517
|
3
|
|
|
|
|
4
|
$n1122=$n11pp-$n1111-$n1121-$n1112; |
518
|
3
|
|
|
|
|
4
|
$n2111=$np111-$n1111; |
519
|
|
|
|
|
|
|
|
520
|
3
|
|
|
|
|
4
|
$n1211=$n1p11-$n1111; |
521
|
3
|
|
|
|
|
5
|
$n1212=$n1p1p-$n1111-$n1112-$n1211; |
522
|
3
|
|
|
|
|
4
|
$n1221=$n1pp1-$n1111-$n1211-$n1121; |
523
|
3
|
|
|
|
|
5
|
$n1222=$n1ppp-$n1111-$n1211-$n1121-$n1112; |
524
|
|
|
|
|
|
|
|
525
|
3
|
|
|
|
|
5
|
$n2112=$np11p-$n1111-$n2111-$n1112; |
526
|
3
|
|
|
|
|
5
|
$n2121=$np1p1-$n1111-$n2111-$n1121; |
527
|
3
|
|
|
|
|
55
|
$n2122=$np1pp-$n1111-$n2111-$n1121-$n1112; |
528
|
3
|
|
|
|
|
5
|
$n2211=$npp11-$n1111-$n2111-$n1211; |
529
|
|
|
|
|
|
|
|
530
|
3
|
|
|
|
|
7
|
$n2212=$npp1p-$n1111-$n2111-$n1211-$n1112; |
531
|
|
|
|
|
|
|
|
532
|
3
|
|
|
|
|
4
|
$n2221=$nppp1-$n1111-$n2111-$n1211-$n1121; |
533
|
3
|
|
|
|
|
4
|
$n2222=$npppp-$n1111-$n2111-$n1211-$n1121-$n1112; |
534
|
|
|
|
|
|
|
|
535
|
|
|
|
|
|
|
|
536
|
|
|
|
|
|
|
# n1112 should be greater than equal to zero |
537
|
3
|
50
|
|
|
|
10
|
if ($n1112 < 0) { |
538
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1112 ($n1112) must not be negative."; |
539
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
540
|
|
|
|
|
|
|
} |
541
|
|
|
|
|
|
|
|
542
|
|
|
|
|
|
|
# n1112 frequency should be less than or equal to total4grams |
543
|
3
|
50
|
|
|
|
43
|
if ($n1112 > $npppp) { |
544
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1112 ($n1112) must not exceed total number of 4grams."; |
545
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
546
|
|
|
|
|
|
|
} |
547
|
|
|
|
|
|
|
|
548
|
|
|
|
|
|
|
# n1121 should be greater than equal to zero |
549
|
3
|
50
|
|
|
|
7
|
if ($n1121 < 0) { |
550
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1121 ($n1121) must not be negative."; |
551
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
552
|
|
|
|
|
|
|
} |
553
|
|
|
|
|
|
|
|
554
|
|
|
|
|
|
|
# n1121 frequency should be less than or equal to total 4grams |
555
|
3
|
50
|
|
|
|
7
|
if ($n1121 > $npppp) { |
556
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1121 ($n1121) must not exceed total number of 4grams."; |
557
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
558
|
|
|
|
|
|
|
} |
559
|
|
|
|
|
|
|
|
560
|
|
|
|
|
|
|
# n1122 should be greater than equal to zero |
561
|
3
|
50
|
|
|
|
6
|
if ($n1122 < 0) { |
562
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1122 ($n1122) must not be negative."; |
563
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
564
|
|
|
|
|
|
|
} |
565
|
|
|
|
|
|
|
|
566
|
|
|
|
|
|
|
# n1122 frequency should be less than or equal to total 4grams |
567
|
3
|
50
|
|
|
|
6
|
if ($n1122 > $npppp) { |
568
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1122 ($n1122) must not exceed total number of 4grams."; |
569
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
570
|
|
|
|
|
|
|
} |
571
|
|
|
|
|
|
|
|
572
|
|
|
|
|
|
|
# n1211 should be greater than equal to zero |
573
|
3
|
50
|
|
|
|
6
|
if ($n1211 < 0) { |
574
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1211 ($n1211) must not be negative."; |
575
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
576
|
|
|
|
|
|
|
} |
577
|
|
|
|
|
|
|
|
578
|
|
|
|
|
|
|
# n1211 frequency should be less than or equal to total 4grams |
579
|
3
|
50
|
|
|
|
7
|
if ($n1211 > $npppp) { |
580
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1211 ($n1211) must not exceed total number of 4grams."; |
581
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
582
|
|
|
|
|
|
|
} |
583
|
|
|
|
|
|
|
|
584
|
|
|
|
|
|
|
# n1221 should be greater than equal to zero |
585
|
3
|
50
|
|
|
|
5
|
if ($n1221 < 0) { |
586
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1221 ($n1221) must not be negative."; |
587
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
588
|
|
|
|
|
|
|
} |
589
|
|
|
|
|
|
|
|
590
|
|
|
|
|
|
|
# n1221 frequency should be less than or equal to total 4grams |
591
|
3
|
50
|
|
|
|
6
|
if ($n1221 > $npppp) { |
592
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1221 ($n1221) must not exceed total number of 4grams."; |
593
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
594
|
|
|
|
|
|
|
} |
595
|
|
|
|
|
|
|
|
596
|
|
|
|
|
|
|
# n1222 should be greater than equal to zero |
597
|
3
|
50
|
|
|
|
6
|
if ($n1222 < 0) { |
598
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1222 ($n1222) must not be negative."; |
599
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
600
|
|
|
|
|
|
|
} |
601
|
|
|
|
|
|
|
|
602
|
|
|
|
|
|
|
# n1222 frequency should be less than or equal to total 4grams |
603
|
3
|
50
|
|
|
|
7
|
if ($n1222 > $npppp) { |
604
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1222 ($n1222) must not exceed total number of 4grams."; |
605
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
606
|
|
|
|
|
|
|
} |
607
|
|
|
|
|
|
|
|
608
|
|
|
|
|
|
|
# n2111 should be greater than equal to zero |
609
|
3
|
50
|
|
|
|
6
|
if ($n2111 < 0) { |
610
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2111 ($n2111) must not be negative."; |
611
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
612
|
|
|
|
|
|
|
} |
613
|
|
|
|
|
|
|
|
614
|
|
|
|
|
|
|
# n2111 frequency should be less than or equal to total 4grams |
615
|
3
|
50
|
|
|
|
6
|
if ($n2111 > $npppp) { |
616
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2111 ($n2111) must not exceed total number of 4grams."; |
617
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
618
|
|
|
|
|
|
|
} |
619
|
|
|
|
|
|
|
|
620
|
|
|
|
|
|
|
# n2112 should be greater than equal to zero |
621
|
3
|
100
|
|
|
|
8
|
if ($n2112 < 0) { |
622
|
2
|
|
|
|
|
6
|
$errorMessage = "Frequency value n2112 ($n2112) must not be negative."; |
623
|
2
|
|
|
|
|
2
|
$errorCodeNumber = 202; return; |
|
2
|
|
|
|
|
6
|
|
624
|
|
|
|
|
|
|
} |
625
|
|
|
|
|
|
|
|
626
|
|
|
|
|
|
|
# n2112 frequency should be less than or equal to total 4grams |
627
|
1
|
50
|
|
|
|
3
|
if ($n2112 > $npppp) { |
628
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2112 ($n2112) must not exceed total number of 4grams."; |
629
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
630
|
|
|
|
|
|
|
} |
631
|
|
|
|
|
|
|
|
632
|
|
|
|
|
|
|
# n2121 should be greater than equal to zero |
633
|
1
|
50
|
|
|
|
3
|
if ($n2121 < 0) { |
634
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2121 ($n2121) must not be negative."; |
635
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
636
|
|
|
|
|
|
|
} |
637
|
|
|
|
|
|
|
|
638
|
|
|
|
|
|
|
# n2121 frequency should be less than or equal to total 4grams |
639
|
1
|
50
|
|
|
|
3
|
if ($n2121 > $npppp) { |
640
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2121 ($n2121) must not exceed total number of 4grams."; |
641
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
642
|
|
|
|
|
|
|
} |
643
|
|
|
|
|
|
|
|
644
|
|
|
|
|
|
|
# n2122 should be greater than equal to zero |
645
|
1
|
50
|
|
|
|
4
|
if ($n2122 < 0) { |
646
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2122 ($n2122) must not be negative."; |
647
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
648
|
|
|
|
|
|
|
} |
649
|
|
|
|
|
|
|
|
650
|
|
|
|
|
|
|
# n2122 frequency should be less than or equal to total 4grams |
651
|
1
|
50
|
|
|
|
3
|
if ($n2122 > $npppp) { |
652
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2122 ($n2122) must not exceed total number of 4grams."; |
653
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
654
|
|
|
|
|
|
|
} |
655
|
|
|
|
|
|
|
|
656
|
|
|
|
|
|
|
|
657
|
|
|
|
|
|
|
# n2211 should be greater than equal to zero |
658
|
1
|
50
|
|
|
|
3
|
if ($n2211 < 0) { |
659
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2211 ($n2211) must not be negative."; |
660
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
661
|
|
|
|
|
|
|
} |
662
|
|
|
|
|
|
|
|
663
|
|
|
|
|
|
|
# n2211 frequency should be less than or equal to total 4grams |
664
|
1
|
50
|
|
|
|
3
|
if ($n2211 > $npppp) { |
665
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2211 ($n2211) must not exceed total number of 4grams."; |
666
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
667
|
|
|
|
|
|
|
} |
668
|
|
|
|
|
|
|
|
669
|
|
|
|
|
|
|
|
670
|
|
|
|
|
|
|
# n2212 should be greater than equal to zero |
671
|
1
|
50
|
|
|
|
3
|
if ($n2212 < 0) { |
672
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2212 ($n2212) must not be negative."; |
673
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
674
|
|
|
|
|
|
|
} |
675
|
|
|
|
|
|
|
|
676
|
|
|
|
|
|
|
# n2212 frequency should be less than or equal to total 4grams |
677
|
1
|
50
|
|
|
|
3
|
if ($n2212 > $npppp) { |
678
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2212 ($n2212) must not exceed total number of 4grams."; |
679
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
680
|
|
|
|
|
|
|
} |
681
|
|
|
|
|
|
|
|
682
|
|
|
|
|
|
|
# n2221 should be greater than equal to zero |
683
|
1
|
50
|
|
|
|
7
|
if ($n2221 < 0) { |
684
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2221 ($n2221) must not be negative."; |
685
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
686
|
|
|
|
|
|
|
} |
687
|
|
|
|
|
|
|
|
688
|
|
|
|
|
|
|
# n2221 frequency should be less than or equal to total 4grams |
689
|
1
|
50
|
|
|
|
8
|
if ($n2221 > $npppp) { |
690
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2221 ($n2221) must not exceed total number of 4grams."; |
691
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
692
|
|
|
|
|
|
|
} |
693
|
|
|
|
|
|
|
|
694
|
|
|
|
|
|
|
|
695
|
|
|
|
|
|
|
# n2222 should be greater than equal to zero |
696
|
1
|
50
|
|
|
|
4
|
if ($n2222 < 0) { |
697
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2222 ($n2222) must not be negative."; |
698
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
699
|
|
|
|
|
|
|
} |
700
|
|
|
|
|
|
|
|
701
|
|
|
|
|
|
|
# n2222 frequency should be less than or equal to total 4grams |
702
|
1
|
50
|
|
|
|
2
|
if ($n2222 > $npppp) { |
703
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2222 ($n2222) must not exceed total number of 4grams."; |
704
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
0
|
|
|
|
|
0
|
|
705
|
|
|
|
|
|
|
} |
706
|
|
|
|
|
|
|
|
707
|
1
|
|
|
|
|
5
|
return 1; |
708
|
|
|
|
|
|
|
} |
709
|
|
|
|
|
|
|
|
710
|
|
|
|
|
|
|
|
711
|
|
|
|
|
|
|
|
712
|
|
|
|
|
|
|
|
713
|
|
|
|
|
|
|
|
714
|
|
|
|
|
|
|
=item computeExpectedValues($count_values) - A method to compute |
715
|
|
|
|
|
|
|
expected values. |
716
|
|
|
|
|
|
|
|
717
|
|
|
|
|
|
|
INPUT PARAMS : $count_values .. Reference to an hash consisting |
718
|
|
|
|
|
|
|
of the count output. |
719
|
|
|
|
|
|
|
|
720
|
|
|
|
|
|
|
RETURN VALUES : 1/undef ..returns '1' to indicate success |
721
|
|
|
|
|
|
|
and an undefined(NULL) value to indicate |
722
|
|
|
|
|
|
|
failure. |
723
|
|
|
|
|
|
|
|
724
|
|
|
|
|
|
|
=cut |
725
|
|
|
|
|
|
|
|
726
|
|
|
|
|
|
|
sub computeExpectedValues |
727
|
|
|
|
|
|
|
{ |
728
|
1
|
|
|
1
|
1
|
3
|
my ($values)=@_; |
729
|
|
|
|
|
|
|
|
730
|
1
|
50
|
|
|
|
3
|
if(! (defined $expected_values) ) { |
731
|
1
|
|
|
|
|
2
|
$expected_values = "0 1 2 3"; |
732
|
|
|
|
|
|
|
} |
733
|
|
|
|
|
|
|
|
734
|
|
|
|
|
|
|
# the expected values can be calculated based on |
735
|
|
|
|
|
|
|
# a number of different models. I have the code |
736
|
|
|
|
|
|
|
# for the models here but we do not have the option |
737
|
|
|
|
|
|
|
# to change them implemented in the statistic.pl |
738
|
|
|
|
|
|
|
# |
739
|
|
|
|
|
|
|
|
740
|
|
|
|
|
|
|
|
741
|
|
|
|
|
|
|
# calculate the expected values for : "0 123" check |
742
|
1
|
50
|
|
|
|
27
|
if($expected_values eq "0 123") { |
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
743
|
|
|
|
|
|
|
#print "0 123\n"; |
744
|
|
|
|
|
|
|
|
745
|
0
|
|
|
|
|
0
|
$np111 = $n1111 + $n2111; |
746
|
0
|
|
|
|
|
0
|
$np112 = $n1112 + $n2112; |
747
|
0
|
|
|
|
|
0
|
$np121 = $n1121 + $n2121; |
748
|
0
|
|
|
|
|
0
|
$np122 = $n1122 + $n2122; |
749
|
0
|
|
|
|
|
0
|
$np211 = $n1211 + $n2211; |
750
|
0
|
|
|
|
|
0
|
$np212 = $n1212 + $n2212; |
751
|
0
|
|
|
|
|
0
|
$np221 = $n1221 + $n2221; |
752
|
0
|
|
|
|
|
0
|
$np222 = $n1222 + $n2222; |
753
|
|
|
|
|
|
|
|
754
|
0
|
|
|
|
|
0
|
$m1111=$n1ppp*$np111/($npppp); |
755
|
0
|
|
|
|
|
0
|
$m1112=$n1ppp*$np112/($npppp); |
756
|
0
|
|
|
|
|
0
|
$m1121=$n1ppp*$np121/($npppp); |
757
|
0
|
|
|
|
|
0
|
$m1122=$n1ppp*$np122/($npppp); |
758
|
0
|
|
|
|
|
0
|
$m1211=$n1ppp*$np211/($npppp); |
759
|
0
|
|
|
|
|
0
|
$m1212=$n1ppp*$np212/($npppp); |
760
|
0
|
|
|
|
|
0
|
$m1221=$n1ppp*$np221/($npppp); |
761
|
0
|
|
|
|
|
0
|
$m1222=$n1ppp*$np222/($npppp); |
762
|
0
|
|
|
|
|
0
|
$m2111=$n2ppp*$np111/($npppp); |
763
|
0
|
|
|
|
|
0
|
$m2112=$n2ppp*$np112/($npppp); |
764
|
0
|
|
|
|
|
0
|
$m2121=$n2ppp*$np121/($npppp); |
765
|
0
|
|
|
|
|
0
|
$m2122=$n2ppp*$np122/($npppp); |
766
|
0
|
|
|
|
|
0
|
$m2211=$n2ppp*$np211/($npppp); |
767
|
0
|
|
|
|
|
0
|
$m2212=$n2ppp*$np212/($npppp); |
768
|
0
|
|
|
|
|
0
|
$m2221=$n2ppp*$np221/($npppp); |
769
|
0
|
|
|
|
|
0
|
$m2222=$n2ppp*$np222/($npppp); |
770
|
|
|
|
|
|
|
} |
771
|
|
|
|
|
|
|
|
772
|
|
|
|
|
|
|
# calculate the expected values for : "01 2 3" check |
773
|
|
|
|
|
|
|
elsif($expected_values eq "01 2 3") { |
774
|
|
|
|
|
|
|
#print "01 2 3\n"; |
775
|
|
|
|
|
|
|
|
776
|
0
|
|
|
|
|
0
|
$n12pp = $n1211 + $n1212 + $n1221 + $n1222; |
777
|
0
|
|
|
|
|
0
|
$n21pp = $n2111 + $n2112 + $n2121 + $n2122; |
778
|
0
|
|
|
|
|
0
|
$n22pp = $n2211 + $n2212 + $n2221 + $n2222; |
779
|
|
|
|
|
|
|
|
780
|
0
|
|
|
|
|
0
|
$m1111=$n11pp*$npp1p*$nppp1/($npppp**2); |
781
|
0
|
|
|
|
|
0
|
$m1112=$n11pp*$npp1p*$nppp2/($npppp**2); |
782
|
0
|
|
|
|
|
0
|
$m1121=$n11pp*$npp2p*$nppp1/($npppp**2); |
783
|
0
|
|
|
|
|
0
|
$m1122=$n11pp*$npp2p*$nppp2/($npppp**2); |
784
|
0
|
|
|
|
|
0
|
$m1211=$n12pp*$npp1p*$nppp1/($npppp**2); |
785
|
0
|
|
|
|
|
0
|
$m1212=$n12pp*$npp1p*$nppp2/($npppp**2); |
786
|
0
|
|
|
|
|
0
|
$m1221=$n12pp*$npp2p*$nppp1/($npppp**2); |
787
|
0
|
|
|
|
|
0
|
$m1222=$n12pp*$npp2p*$nppp2/($npppp**2); |
788
|
0
|
|
|
|
|
0
|
$m2111=$n21pp*$npp1p*$nppp1/($npppp**2); |
789
|
0
|
|
|
|
|
0
|
$m2112=$n21pp*$npp1p*$nppp2/($npppp**2); |
790
|
0
|
|
|
|
|
0
|
$m2121=$n21pp*$npp2p*$nppp1/($npppp**2); |
791
|
0
|
|
|
|
|
0
|
$m2122=$n21pp*$npp2p*$nppp2/($npppp**2); |
792
|
0
|
|
|
|
|
0
|
$m2211=$n22pp*$npp1p*$nppp1/($npppp**2); |
793
|
0
|
|
|
|
|
0
|
$m2212=$n22pp*$npp1p*$nppp2/($npppp**2); |
794
|
0
|
|
|
|
|
0
|
$m2221=$n22pp*$npp2p*$nppp1/($npppp**2); |
795
|
0
|
|
|
|
|
0
|
$m2222=$n22pp*$npp2p*$nppp2/($npppp**2); |
796
|
|
|
|
|
|
|
|
797
|
|
|
|
|
|
|
} |
798
|
|
|
|
|
|
|
|
799
|
|
|
|
|
|
|
# calculate the expected values for : "0 1 23" check |
800
|
|
|
|
|
|
|
elsif($expected_values eq "0 1 23") { |
801
|
|
|
|
|
|
|
#print "0 1 23\n"; |
802
|
|
|
|
|
|
|
|
803
|
0
|
|
|
|
|
0
|
$npp12 = $n1112 + $n1212 + $n2112 + $n2212; |
804
|
0
|
|
|
|
|
0
|
$npp21 = $n1121 + $n1221 + $n2121 + $n2221; |
805
|
0
|
|
|
|
|
0
|
$npp22 = $n1122 + $n1222 + $n2122 + $n2222; |
806
|
|
|
|
|
|
|
|
807
|
0
|
|
|
|
|
0
|
$m1111=$n1ppp*$np1pp*$npp11/($npppp**2); |
808
|
0
|
|
|
|
|
0
|
$m1112=$n1ppp*$np1pp*$npp12/($npppp**2); |
809
|
0
|
|
|
|
|
0
|
$m1121=$n1ppp*$np1pp*$npp21/($npppp**2); |
810
|
0
|
|
|
|
|
0
|
$m1122=$n1ppp*$np1pp*$npp22/($npppp**2); |
811
|
0
|
|
|
|
|
0
|
$m1211=$n1ppp*$np2pp*$npp11/($npppp**2); |
812
|
0
|
|
|
|
|
0
|
$m1212=$n1ppp*$np2pp*$npp12/($npppp**2); |
813
|
0
|
|
|
|
|
0
|
$m1221=$n1ppp*$np2pp*$npp21/($npppp**2); |
814
|
0
|
|
|
|
|
0
|
$m1222=$n1ppp*$np2pp*$npp22/($npppp**2); |
815
|
0
|
|
|
|
|
0
|
$m2111=$n2ppp*$np1pp*$npp11/($npppp**2); |
816
|
0
|
|
|
|
|
0
|
$m2112=$n2ppp*$np1pp*$npp12/($npppp**2); |
817
|
0
|
|
|
|
|
0
|
$m2121=$n2ppp*$np1pp*$npp21/($npppp**2); |
818
|
0
|
|
|
|
|
0
|
$m2122=$n2ppp*$np1pp*$npp22/($npppp**2); |
819
|
0
|
|
|
|
|
0
|
$m2211=$n2ppp*$np2pp*$npp11/($npppp**2); |
820
|
0
|
|
|
|
|
0
|
$m2212=$n2ppp*$np2pp*$npp12/($npppp**2); |
821
|
0
|
|
|
|
|
0
|
$m2221=$n2ppp*$np2pp*$npp21/($npppp**2); |
822
|
0
|
|
|
|
|
0
|
$m2222=$n2ppp*$np2pp*$npp22/($npppp**2); |
823
|
|
|
|
|
|
|
} |
824
|
|
|
|
|
|
|
# calculate the expected values for : "0 12 3" check |
825
|
|
|
|
|
|
|
elsif($expected_values eq "0 12 3") { |
826
|
|
|
|
|
|
|
#print "0 12 3\n"; |
827
|
|
|
|
|
|
|
|
828
|
0
|
|
|
|
|
0
|
$np12p = $n1121 + $n1122 + $n2121 + $n2122; |
829
|
0
|
|
|
|
|
0
|
$np21p = $n1211 + $n1212 + $n2211 + $n2212; |
830
|
0
|
|
|
|
|
0
|
$np22p = $n1221 + $n1222 + $n2221 + $n2222; |
831
|
|
|
|
|
|
|
|
832
|
0
|
|
|
|
|
0
|
$m1111=$n1ppp*$np11p*$nppp1/($npppp**2); |
833
|
0
|
|
|
|
|
0
|
$m1112=$n1ppp*$np11p*$nppp2/($npppp**2); |
834
|
0
|
|
|
|
|
0
|
$m1121=$n1ppp*$np12p*$nppp1/($npppp**2); |
835
|
0
|
|
|
|
|
0
|
$m1122=$n1ppp*$np12p*$nppp2/($npppp**2); |
836
|
0
|
|
|
|
|
0
|
$m1211=$n1ppp*$np21p*$nppp1/($npppp**2); |
837
|
0
|
|
|
|
|
0
|
$m1212=$n1ppp*$np21p*$nppp2/($npppp**2); |
838
|
0
|
|
|
|
|
0
|
$m1221=$n1ppp*$np22p*$nppp1/($npppp**2); |
839
|
0
|
|
|
|
|
0
|
$m1222=$n1ppp*$np22p*$nppp2/($npppp**2); |
840
|
0
|
|
|
|
|
0
|
$m2111=$n2ppp*$np11p*$nppp1/($npppp**2); |
841
|
0
|
|
|
|
|
0
|
$m2112=$n2ppp*$np11p*$nppp2/($npppp**2); |
842
|
0
|
|
|
|
|
0
|
$m2121=$n2ppp*$np12p*$nppp1/($npppp**2); |
843
|
0
|
|
|
|
|
0
|
$m2122=$n2ppp*$np12p*$nppp2/($npppp**2); |
844
|
0
|
|
|
|
|
0
|
$m2211=$n2ppp*$np21p*$nppp1/($npppp**2); |
845
|
0
|
|
|
|
|
0
|
$m2212=$n2ppp*$np21p*$nppp2/($npppp**2); |
846
|
0
|
|
|
|
|
0
|
$m2221=$n2ppp*$np22p*$nppp1/($npppp**2); |
847
|
0
|
|
|
|
|
0
|
$m2222=$n2ppp*$np22p*$nppp2/($npppp**2); |
848
|
|
|
|
|
|
|
} |
849
|
|
|
|
|
|
|
|
850
|
|
|
|
|
|
|
# calculate the expected values for : "012 3" check |
851
|
|
|
|
|
|
|
elsif($expected_values eq "012 3") { |
852
|
|
|
|
|
|
|
#print "012 3\n"; |
853
|
|
|
|
|
|
|
|
854
|
0
|
|
|
|
|
0
|
$n112p = $n1121 + $n1122; |
855
|
0
|
|
|
|
|
0
|
$n121p = $n1211 + $n1212; |
856
|
0
|
|
|
|
|
0
|
$n122p = $n1221 + $n1222; |
857
|
0
|
|
|
|
|
0
|
$n211p = $n2111 + $n2112; |
858
|
0
|
|
|
|
|
0
|
$n212p = $n2121 + $n2122; |
859
|
0
|
|
|
|
|
0
|
$n221p = $n2211 + $n2212; |
860
|
0
|
|
|
|
|
0
|
$n222p = $n2221 + $n2222; |
861
|
|
|
|
|
|
|
|
862
|
0
|
|
|
|
|
0
|
$m1111=$n111p*$nppp1/($npppp); |
863
|
0
|
|
|
|
|
0
|
$m1112=$n111p*$nppp2/($npppp); |
864
|
0
|
|
|
|
|
0
|
$m1121=$n112p*$nppp1/($npppp); |
865
|
0
|
|
|
|
|
0
|
$m1122=$n112p*$nppp2/($npppp); |
866
|
0
|
|
|
|
|
0
|
$m1211=$n121p*$nppp1/($npppp); |
867
|
0
|
|
|
|
|
0
|
$m1212=$n121p*$nppp2/($npppp); |
868
|
0
|
|
|
|
|
0
|
$m1221=$n122p*$nppp1/($npppp); |
869
|
0
|
|
|
|
|
0
|
$m1222=$n122p*$nppp2/($npppp); |
870
|
0
|
|
|
|
|
0
|
$m2111=$n211p*$nppp1/($npppp); |
871
|
0
|
|
|
|
|
0
|
$m2112=$n211p*$nppp2/($npppp); |
872
|
0
|
|
|
|
|
0
|
$m2121=$n212p*$nppp1/($npppp); |
873
|
0
|
|
|
|
|
0
|
$m2122=$n212p*$nppp2/($npppp); |
874
|
0
|
|
|
|
|
0
|
$m2211=$n221p*$nppp1/($npppp); |
875
|
0
|
|
|
|
|
0
|
$m2212=$n221p*$nppp2/($npppp); |
876
|
0
|
|
|
|
|
0
|
$m2221=$n222p*$nppp1/($npppp); |
877
|
0
|
|
|
|
|
0
|
$m2222=$n222p*$nppp2/($npppp); |
878
|
|
|
|
|
|
|
} |
879
|
|
|
|
|
|
|
|
880
|
|
|
|
|
|
|
# calculate the expected values for : "0 13 2" check |
881
|
|
|
|
|
|
|
elsif($expected_values eq "0 13 2") { |
882
|
|
|
|
|
|
|
#print "0 13 2\n"; |
883
|
|
|
|
|
|
|
|
884
|
0
|
|
|
|
|
0
|
$np1p2 = $n1112 + $n1122 + $n2112 + $n2122; |
885
|
0
|
|
|
|
|
0
|
$np2p1 = $n1211 + $n1221 + $n2211 + $n2221; |
886
|
0
|
|
|
|
|
0
|
$np2p2 = $n1212 + $n1222 + $n2212 + $n2222; |
887
|
|
|
|
|
|
|
|
888
|
0
|
|
|
|
|
0
|
$m1111=$n1ppp*$np1p1*$npp1p/($npppp**2); |
889
|
0
|
|
|
|
|
0
|
$m1112=$n1ppp*$np1p2*$npp1p/($npppp**2); |
890
|
0
|
|
|
|
|
0
|
$m1121=$n1ppp*$np1p1*$npp2p/($npppp**2); |
891
|
0
|
|
|
|
|
0
|
$m1122=$n1ppp*$np1p2*$npp2p/($npppp**2); |
892
|
0
|
|
|
|
|
0
|
$m1211=$n1ppp*$np2p1*$npp1p/($npppp**2); |
893
|
0
|
|
|
|
|
0
|
$m1212=$n1ppp*$np2p2*$npp1p/($npppp**2); |
894
|
0
|
|
|
|
|
0
|
$m1221=$n1ppp*$np2p1*$npp2p/($npppp**2); |
895
|
0
|
|
|
|
|
0
|
$m1222=$n1ppp*$np2p2*$npp2p/($npppp**2); |
896
|
0
|
|
|
|
|
0
|
$m2111=$n2ppp*$np1p1*$npp1p/($npppp**2); |
897
|
0
|
|
|
|
|
0
|
$m2112=$n2ppp*$np1p2*$npp1p/($npppp**2); |
898
|
0
|
|
|
|
|
0
|
$m2121=$n2ppp*$np1p1*$npp2p/($npppp**2); |
899
|
0
|
|
|
|
|
0
|
$m2122=$n2ppp*$np1p2*$npp2p/($npppp**2); |
900
|
0
|
|
|
|
|
0
|
$m2211=$n2ppp*$np2p1*$npp1p/($npppp**2); |
901
|
0
|
|
|
|
|
0
|
$m2212=$n2ppp*$np2p2*$npp1p/($npppp**2); |
902
|
0
|
|
|
|
|
0
|
$m2221=$n2ppp*$np2p1*$npp2p/($npppp**2); |
903
|
0
|
|
|
|
|
0
|
$m2222=$n2ppp*$np2p2*$npp2p/($npppp**2); |
904
|
|
|
|
|
|
|
|
905
|
|
|
|
|
|
|
} |
906
|
|
|
|
|
|
|
|
907
|
|
|
|
|
|
|
# calculate the expected values for : "02 13" |
908
|
|
|
|
|
|
|
elsif($expected_values eq "02 13") { |
909
|
|
|
|
|
|
|
#print "02 13\n"; |
910
|
|
|
|
|
|
|
|
911
|
0
|
|
|
|
|
0
|
$n1p2p = $n1121 + $n1122 + $n1221 + $n1222; |
912
|
0
|
|
|
|
|
0
|
$n2p1p = $n2111 + $n2112 + $n2211 + $n2212; |
913
|
0
|
|
|
|
|
0
|
$n2p2p = $n2121 + $n2122 + $n2221 + $n2222; |
914
|
|
|
|
|
|
|
|
915
|
0
|
|
|
|
|
0
|
$np1p2 = $n1112 + $n1122 + $n2112 + $n2122; |
916
|
0
|
|
|
|
|
0
|
$np2p1 = $n1211 + $n1221 + $n2211 + $n2221; |
917
|
0
|
|
|
|
|
0
|
$np2p2 = $n1212 + $n1222 + $n2212 + $n2222; |
918
|
|
|
|
|
|
|
|
919
|
|
|
|
|
|
|
|
920
|
0
|
|
|
|
|
0
|
$m1111=$n1p1p*$np1p1/($npppp); |
921
|
0
|
|
|
|
|
0
|
$m1112=$n1p1p*$np1p2/($npppp); |
922
|
0
|
|
|
|
|
0
|
$m1121=$n1p2p*$np1p1/($npppp); |
923
|
0
|
|
|
|
|
0
|
$m1122=$n1p2p*$np1p2/($npppp); |
924
|
0
|
|
|
|
|
0
|
$m1211=$n1p1p*$np2p1/($npppp); |
925
|
0
|
|
|
|
|
0
|
$m1212=$n1p1p*$np2p2/($npppp); |
926
|
0
|
|
|
|
|
0
|
$m1221=$n1p2p*$np2p1/($npppp); |
927
|
0
|
|
|
|
|
0
|
$m1222=$n1p2p*$np2p2/($npppp); |
928
|
0
|
|
|
|
|
0
|
$m2111=$n2p1p*$np1p1/($npppp); |
929
|
0
|
|
|
|
|
0
|
$m2112=$n2p1p*$np1p2/($npppp); |
930
|
0
|
|
|
|
|
0
|
$m2121=$n2p2p*$np1p1/($npppp); |
931
|
0
|
|
|
|
|
0
|
$m2122=$n2p2p*$np1p2/($npppp); |
932
|
0
|
|
|
|
|
0
|
$m2211=$n2p1p*$np2p1/($npppp); |
933
|
0
|
|
|
|
|
0
|
$m2212=$n2p1p*$np2p2/($npppp); |
934
|
0
|
|
|
|
|
0
|
$m2221=$n2p2p*$np2p1/($npppp); |
935
|
0
|
|
|
|
|
0
|
$m2222=$n2p2p*$np2p2/($npppp); |
936
|
|
|
|
|
|
|
|
937
|
|
|
|
|
|
|
} |
938
|
|
|
|
|
|
|
|
939
|
|
|
|
|
|
|
# calculate the expected values for : "03 12" check |
940
|
|
|
|
|
|
|
elsif($expected_values eq "03 12") { |
941
|
|
|
|
|
|
|
#print "03 12\n"; |
942
|
|
|
|
|
|
|
|
943
|
0
|
|
|
|
|
0
|
$n1pp2 = $n1112 + $n1122 + $n1212 + $n1222; |
944
|
0
|
|
|
|
|
0
|
$n2pp1 = $n2111 + $n2121 + $n2211 + $n2221; |
945
|
0
|
|
|
|
|
0
|
$n2pp2 = $n2112 + $n2122 + $n2212 + $n2222; |
946
|
|
|
|
|
|
|
|
947
|
0
|
|
|
|
|
0
|
$np12p = $n1121 + $n1122 + $n2121 + $n2122; |
948
|
0
|
|
|
|
|
0
|
$np21p = $n1211 + $n1212 + $n2211 + $n2212; |
949
|
0
|
|
|
|
|
0
|
$np22p = $n1221 + $n1222 + $n2221 + $n2222; |
950
|
|
|
|
|
|
|
|
951
|
0
|
|
|
|
|
0
|
$m1111=$n1pp1*$np11p/($npppp); |
952
|
0
|
|
|
|
|
0
|
$m1112=$n1pp2*$np11p/($npppp); |
953
|
0
|
|
|
|
|
0
|
$m1121=$n1pp1*$np12p/($npppp); |
954
|
0
|
|
|
|
|
0
|
$m1122=$n1pp2*$np12p/($npppp); |
955
|
0
|
|
|
|
|
0
|
$m1211=$n1pp1*$np21p/($npppp); |
956
|
0
|
|
|
|
|
0
|
$m1212=$n1pp2*$np21p/($npppp); |
957
|
0
|
|
|
|
|
0
|
$m1221=$n1pp1*$np22p/($npppp); |
958
|
0
|
|
|
|
|
0
|
$m1222=$n1pp2*$np22p/($npppp); |
959
|
0
|
|
|
|
|
0
|
$m2111=$n2pp1*$np11p/($npppp); |
960
|
0
|
|
|
|
|
0
|
$m2112=$n2pp2*$np11p/($npppp); |
961
|
0
|
|
|
|
|
0
|
$m2121=$n2pp1*$np12p/($npppp); |
962
|
0
|
|
|
|
|
0
|
$m2122=$n2pp2*$np12p/($npppp); |
963
|
0
|
|
|
|
|
0
|
$m2211=$n2pp1*$np21p/($npppp); |
964
|
0
|
|
|
|
|
0
|
$m2212=$n2pp2*$np21p/($npppp); |
965
|
0
|
|
|
|
|
0
|
$m2221=$n2pp1*$np22p/($npppp); |
966
|
0
|
|
|
|
|
0
|
$m2222=$n2pp2*$np22p/($npppp); |
967
|
|
|
|
|
|
|
} |
968
|
|
|
|
|
|
|
|
969
|
|
|
|
|
|
|
# calculate the expected values for : "023 1" check |
970
|
|
|
|
|
|
|
elsif($expected_values eq "023 1") { |
971
|
|
|
|
|
|
|
#print "023 1\n"; |
972
|
|
|
|
|
|
|
|
973
|
0
|
|
|
|
|
0
|
$n1p12 = $n1112 + $n1212; |
974
|
0
|
|
|
|
|
0
|
$n1p21 = $n1121 + $n1221; |
975
|
0
|
|
|
|
|
0
|
$n1p22 = $n1122 + $n1222; |
976
|
0
|
|
|
|
|
0
|
$n2p11 = $n2111 + $n2211; |
977
|
0
|
|
|
|
|
0
|
$n2p12 = $n2112 + $n2212; |
978
|
0
|
|
|
|
|
0
|
$n2p21 = $n2121 + $n2221; |
979
|
0
|
|
|
|
|
0
|
$n2p22 = $n2122 + $n2222; |
980
|
|
|
|
|
|
|
|
981
|
0
|
|
|
|
|
0
|
$m1111=$n1p11*$np1pp/($npppp); |
982
|
0
|
|
|
|
|
0
|
$m1112=$n1p12*$np1pp/($npppp); |
983
|
0
|
|
|
|
|
0
|
$m1121=$n1p21*$np1pp/($npppp); |
984
|
0
|
|
|
|
|
0
|
$m1122=$n1p22*$np1pp/($npppp); |
985
|
0
|
|
|
|
|
0
|
$m1211=$n1p11*$np2pp/($npppp); |
986
|
0
|
|
|
|
|
0
|
$m1212=$n1p12*$np2pp/($npppp); |
987
|
0
|
|
|
|
|
0
|
$m1221=$n1p21*$np2pp/($npppp); |
988
|
0
|
|
|
|
|
0
|
$m1222=$n1p22*$np2pp/($npppp); |
989
|
0
|
|
|
|
|
0
|
$m2111=$n2p11*$np1pp/($npppp); |
990
|
0
|
|
|
|
|
0
|
$m2112=$n2p12*$np1pp/($npppp); |
991
|
0
|
|
|
|
|
0
|
$m2121=$n2p21*$np1pp/($npppp); |
992
|
0
|
|
|
|
|
0
|
$m2122=$n2p22*$np1pp/($npppp); |
993
|
0
|
|
|
|
|
0
|
$m2211=$n2p11*$np2pp/($npppp); |
994
|
0
|
|
|
|
|
0
|
$m2212=$n2p12*$np2pp/($npppp); |
995
|
0
|
|
|
|
|
0
|
$m2221=$n2p21*$np2pp/($npppp); |
996
|
0
|
|
|
|
|
0
|
$m2222=$n2p22*$np2pp/($npppp); |
997
|
|
|
|
|
|
|
} |
998
|
|
|
|
|
|
|
|
999
|
|
|
|
|
|
|
# calculate the expected values for : "013 2" check |
1000
|
|
|
|
|
|
|
elsif($expected_values eq "013 2") { |
1001
|
|
|
|
|
|
|
#print "013 2\n"; |
1002
|
|
|
|
|
|
|
|
1003
|
0
|
|
|
|
|
0
|
$n11p2 = $n1112 + $n1122; |
1004
|
0
|
|
|
|
|
0
|
$n12p1 = $n1211 + $n1221; |
1005
|
0
|
|
|
|
|
0
|
$n12p2 = $n1212 + $n1222; |
1006
|
0
|
|
|
|
|
0
|
$n21p1 = $n2111 + $n2121; |
1007
|
0
|
|
|
|
|
0
|
$n21p2 = $n2112 + $n2122; |
1008
|
0
|
|
|
|
|
0
|
$n22p1 = $n2211 + $n2221; |
1009
|
0
|
|
|
|
|
0
|
$n22p2 = $n2212 + $n2222; |
1010
|
|
|
|
|
|
|
|
1011
|
0
|
|
|
|
|
0
|
$m1111=$n11p1*$npp1p/($npppp); |
1012
|
0
|
|
|
|
|
0
|
$m1112=$n11p2*$npp1p/($npppp); |
1013
|
0
|
|
|
|
|
0
|
$m1121=$n11p1*$npp2p/($npppp); |
1014
|
0
|
|
|
|
|
0
|
$m1122=$n11p2*$npp2p/($npppp); |
1015
|
0
|
|
|
|
|
0
|
$m1211=$n12p1*$npp1p/($npppp); |
1016
|
0
|
|
|
|
|
0
|
$m1212=$n12p2*$npp1p/($npppp); |
1017
|
0
|
|
|
|
|
0
|
$m1221=$n12p1*$npp2p/($npppp); |
1018
|
0
|
|
|
|
|
0
|
$m1222=$n12p2*$npp2p/($npppp); |
1019
|
0
|
|
|
|
|
0
|
$m2111=$n21p1*$npp1p/($npppp); |
1020
|
0
|
|
|
|
|
0
|
$m2112=$n21p2*$npp1p/($npppp); |
1021
|
0
|
|
|
|
|
0
|
$m2121=$n21p1*$npp2p/($npppp); |
1022
|
0
|
|
|
|
|
0
|
$m2122=$n21p2*$npp2p/($npppp); |
1023
|
0
|
|
|
|
|
0
|
$m2211=$n22p1*$npp1p/($npppp); |
1024
|
0
|
|
|
|
|
0
|
$m2212=$n22p2*$npp1p/($npppp); |
1025
|
0
|
|
|
|
|
0
|
$m2221=$n22p1*$npp2p/($npppp); |
1026
|
0
|
|
|
|
|
0
|
$m2222=$n22p2*$npp2p/($npppp); |
1027
|
|
|
|
|
|
|
} |
1028
|
|
|
|
|
|
|
|
1029
|
|
|
|
|
|
|
# calculate the expected values for : "01 23" check |
1030
|
|
|
|
|
|
|
elsif($expected_values eq "01 23") { |
1031
|
|
|
|
|
|
|
#print "01 23\n"; |
1032
|
|
|
|
|
|
|
|
1033
|
0
|
|
|
|
|
0
|
$n12pp = $n1211+ $n1212 + $n1221 + $n1222; |
1034
|
0
|
|
|
|
|
0
|
$n21pp = $n2111+ $n2112 + $n2121 + $n2122; |
1035
|
0
|
|
|
|
|
0
|
$n22pp = $n2211+ $n2212 + $n2221 + $n2222; |
1036
|
|
|
|
|
|
|
|
1037
|
0
|
|
|
|
|
0
|
$npp12 = $n1112 + $n1212 + $n2112 + $n2212; |
1038
|
0
|
|
|
|
|
0
|
$npp21 = $n1121 + $n1221 + $n2121 + $n2221; |
1039
|
0
|
|
|
|
|
0
|
$npp22 = $n1122 + $n1222 + $n2122 + $n2222; |
1040
|
|
|
|
|
|
|
|
1041
|
|
|
|
|
|
|
|
1042
|
0
|
|
|
|
|
0
|
$m1111=$n11pp*$npp11/($npppp); |
1043
|
0
|
|
|
|
|
0
|
$m1112=$n11pp*$npp12/($npppp); |
1044
|
0
|
|
|
|
|
0
|
$m1121=$n11pp*$npp21/($npppp); |
1045
|
0
|
|
|
|
|
0
|
$m1122=$n11pp*$npp22/($npppp); |
1046
|
0
|
|
|
|
|
0
|
$m1211=$n12pp*$npp11/($npppp); |
1047
|
0
|
|
|
|
|
0
|
$m1212=$n12pp*$npp12/($npppp); |
1048
|
0
|
|
|
|
|
0
|
$m1221=$n12pp*$npp21/($npppp); |
1049
|
0
|
|
|
|
|
0
|
$m1222=$n12pp*$npp22/($npppp); |
1050
|
0
|
|
|
|
|
0
|
$m2111=$n21pp*$npp11/($npppp); |
1051
|
0
|
|
|
|
|
0
|
$m2112=$n21pp*$npp12/($npppp); |
1052
|
0
|
|
|
|
|
0
|
$m2121=$n21pp*$npp21/($npppp); |
1053
|
0
|
|
|
|
|
0
|
$m2122=$n21pp*$npp22/($npppp); |
1054
|
0
|
|
|
|
|
0
|
$m2211=$n22pp*$npp11/($npppp); |
1055
|
0
|
|
|
|
|
0
|
$m2212=$n22pp*$npp12/($npppp); |
1056
|
0
|
|
|
|
|
0
|
$m2221=$n22pp*$npp21/($npppp); |
1057
|
0
|
|
|
|
|
0
|
$m2222=$n22pp*$npp22/($npppp); |
1058
|
|
|
|
|
|
|
} |
1059
|
|
|
|
|
|
|
|
1060
|
|
|
|
|
|
|
# calculate the expected values for : "03 1 2" check |
1061
|
|
|
|
|
|
|
elsif($expected_values eq "03 1 2") { |
1062
|
|
|
|
|
|
|
#print "03 1 2\n"; |
1063
|
|
|
|
|
|
|
|
1064
|
0
|
|
|
|
|
0
|
$n1pp2 = $n1112 + $n1122 + $n1212 + $n1222; |
1065
|
0
|
|
|
|
|
0
|
$n2pp1 = $n2111 + $n2121 + $n2211 + $n2221; |
1066
|
0
|
|
|
|
|
0
|
$n2pp2 = $n2112 + $n2122 + $n2212 + $n2222; |
1067
|
|
|
|
|
|
|
|
1068
|
|
|
|
|
|
|
|
1069
|
0
|
|
|
|
|
0
|
$m1111=$n1pp1*$np1pp*$npp1p/($npppp**2); |
1070
|
0
|
|
|
|
|
0
|
$m1112=$n1pp2*$np1pp*$npp1p/($npppp**2); |
1071
|
0
|
|
|
|
|
0
|
$m1121=$n1pp1*$np1pp*$npp2p/($npppp**2); |
1072
|
0
|
|
|
|
|
0
|
$m1122=$n1pp2*$np1pp*$npp2p/($npppp**2); |
1073
|
0
|
|
|
|
|
0
|
$m1211=$n1pp1*$np2pp*$npp1p/($npppp**2); |
1074
|
0
|
|
|
|
|
0
|
$m1212=$n1pp2*$np2pp*$npp1p/($npppp**2); |
1075
|
0
|
|
|
|
|
0
|
$m1221=$n1pp1*$np2pp*$npp2p/($npppp**2); |
1076
|
0
|
|
|
|
|
0
|
$m1222=$n1pp2*$np2pp*$npp2p/($npppp**2); |
1077
|
0
|
|
|
|
|
0
|
$m2111=$n2pp1*$np1pp*$npp1p/($npppp**2); |
1078
|
0
|
|
|
|
|
0
|
$m2112=$n2pp2*$np1pp*$npp1p/($npppp**2); |
1079
|
0
|
|
|
|
|
0
|
$m2121=$n2pp1*$np1pp*$npp2p/($npppp**2); |
1080
|
0
|
|
|
|
|
0
|
$m2122=$n2pp2*$np1pp*$npp2p/($npppp**2); |
1081
|
0
|
|
|
|
|
0
|
$m2211=$n2pp1*$np2pp*$npp1p/($npppp**2); |
1082
|
0
|
|
|
|
|
0
|
$m2212=$n2pp2*$np2pp*$npp1p/($npppp**2); |
1083
|
0
|
|
|
|
|
0
|
$m2221=$n2pp1*$np2pp*$npp2p/($npppp**2); |
1084
|
0
|
|
|
|
|
0
|
$m2222=$n2pp2*$np2pp*$npp2p/($npppp**2); |
1085
|
|
|
|
|
|
|
} |
1086
|
|
|
|
|
|
|
|
1087
|
|
|
|
|
|
|
# calculate the expected values for : "02 1 3" check |
1088
|
|
|
|
|
|
|
elsif($expected_values eq "02 1 3") { |
1089
|
|
|
|
|
|
|
#print "02 1 3\n"; |
1090
|
|
|
|
|
|
|
|
1091
|
0
|
|
|
|
|
0
|
$n1p2p = $n1121 + $n1122 + $n1221 + $n1222; |
1092
|
0
|
|
|
|
|
0
|
$n2p1p = $n2111 + $n2112 + $n2211 + $n2212; |
1093
|
0
|
|
|
|
|
0
|
$n2p2p = $n2121 + $n2122 + $n2221 + $n2222; |
1094
|
|
|
|
|
|
|
|
1095
|
|
|
|
|
|
|
|
1096
|
0
|
|
|
|
|
0
|
$m1111=$n1p1p*$np1pp*$nppp1/($npppp**2); |
1097
|
0
|
|
|
|
|
0
|
$m1112=$n1p1p*$np1pp*$nppp2/($npppp**2); |
1098
|
0
|
|
|
|
|
0
|
$m1121=$n1p2p*$np1pp*$nppp1/($npppp**2); |
1099
|
0
|
|
|
|
|
0
|
$m1122=$n1p2p*$np1pp*$nppp2/($npppp**2); |
1100
|
0
|
|
|
|
|
0
|
$m1211=$n1p1p*$np2pp*$nppp1/($npppp**2); |
1101
|
0
|
|
|
|
|
0
|
$m1212=$n1p1p*$np2pp*$nppp2/($npppp**2); |
1102
|
0
|
|
|
|
|
0
|
$m1221=$n1p2p*$np2pp*$nppp1/($npppp**2); |
1103
|
0
|
|
|
|
|
0
|
$m1222=$n1p2p*$np2pp*$nppp2/($npppp**2); |
1104
|
0
|
|
|
|
|
0
|
$m2111=$n2p1p*$np1pp*$nppp1/($npppp**2); |
1105
|
0
|
|
|
|
|
0
|
$m2112=$n2p1p*$np1pp*$nppp2/($npppp**2); |
1106
|
0
|
|
|
|
|
0
|
$m2121=$n2p2p*$np1pp*$nppp1/($npppp**2); |
1107
|
0
|
|
|
|
|
0
|
$m2122=$n2p2p*$np1pp*$nppp2/($npppp**2); |
1108
|
0
|
|
|
|
|
0
|
$m2211=$n2p1p*$np2pp*$nppp1/($npppp**2); |
1109
|
0
|
|
|
|
|
0
|
$m2212=$n2p1p*$np2pp*$nppp2/($npppp**2); |
1110
|
0
|
|
|
|
|
0
|
$m2221=$n2p2p*$np2pp*$nppp1/($npppp**2); |
1111
|
0
|
|
|
|
|
0
|
$m2222=$n2p2p*$np2pp*$nppp2/($npppp**2); |
1112
|
|
|
|
|
|
|
} |
1113
|
|
|
|
|
|
|
|
1114
|
|
|
|
|
|
|
else { |
1115
|
|
|
|
|
|
|
|
1116
|
|
|
|
|
|
|
#print "0 1 2 3\n"; |
1117
|
|
|
|
|
|
|
|
1118
|
1
|
|
|
|
|
6
|
$m1111=$n1ppp*$np1pp*$npp1p*$nppp1/($npppp**3); |
1119
|
1
|
|
|
|
|
3
|
$m1112=$n1ppp*$np1pp*$npp1p*$nppp2/($npppp**3); |
1120
|
1
|
|
|
|
|
4
|
$m1121=$n1ppp*$np1pp*$npp2p*$nppp1/($npppp**3); |
1121
|
1
|
|
|
|
|
3
|
$m1122=$n1ppp*$np1pp*$npp2p*$nppp2/($npppp**3); |
1122
|
1
|
|
|
|
|
2
|
$m1211=$n1ppp*$np2pp*$npp1p*$nppp1/($npppp**3); |
1123
|
1
|
|
|
|
|
4
|
$m1212=$n1ppp*$np2pp*$npp1p*$nppp2/($npppp**3); |
1124
|
1
|
|
|
|
|
3
|
$m1221=$n1ppp*$np2pp*$npp2p*$nppp1/($npppp**3); |
1125
|
1
|
|
|
|
|
3
|
$m1222=$n1ppp*$np2pp*$npp2p*$nppp2/($npppp**3); |
1126
|
1
|
|
|
|
|
7
|
$m2111=$n2ppp*$np1pp*$npp1p*$nppp1/($npppp**3); |
1127
|
1
|
|
|
|
|
2
|
$m2112=$n2ppp*$np1pp*$npp1p*$nppp2/($npppp**3); |
1128
|
1
|
|
|
|
|
2
|
$m2121=$n2ppp*$np1pp*$npp2p*$nppp1/($npppp**3); |
1129
|
1
|
|
|
|
|
3
|
$m2122=$n2ppp*$np1pp*$npp2p*$nppp2/($npppp**3); |
1130
|
1
|
|
|
|
|
3
|
$m2211=$n2ppp*$np2pp*$npp1p*$nppp1/($npppp**3); |
1131
|
1
|
|
|
|
|
3
|
$m2212=$n2ppp*$np2pp*$npp1p*$nppp2/($npppp**3); |
1132
|
1
|
|
|
|
|
3
|
$m2221=$n2ppp*$np2pp*$npp2p*$nppp1/($npppp**3); |
1133
|
1
|
|
|
|
|
3
|
$m2222=$n2ppp*$np2pp*$npp2p*$nppp2/($npppp**3); |
1134
|
|
|
|
|
|
|
} |
1135
|
|
|
|
|
|
|
|
1136
|
1
|
|
|
|
|
4
|
return 1; |
1137
|
|
|
|
|
|
|
} |
1138
|
|
|
|
|
|
|
|
1139
|
|
|
|
|
|
|
|
1140
|
|
|
|
|
|
|
=item computeMarginalTotals($marginal_values) - This method |
1141
|
|
|
|
|
|
|
computes the marginal totals from the valuescomputed by the count.pl |
1142
|
|
|
|
|
|
|
program and are passed to the calculateStatistic() method. |
1143
|
|
|
|
|
|
|
|
1144
|
|
|
|
|
|
|
INPUT PARAMS : $count_values .. Reference to an hash consisting |
1145
|
|
|
|
|
|
|
of the frequency combination |
1146
|
|
|
|
|
|
|
output. |
1147
|
|
|
|
|
|
|
|
1148
|
|
|
|
|
|
|
RETURN VALUES : 1/undef ..returns '1' to indicate success |
1149
|
|
|
|
|
|
|
and an undefined(NULL) value to indicate |
1150
|
|
|
|
|
|
|
failure. |
1151
|
|
|
|
|
|
|
|
1152
|
|
|
|
|
|
|
=cut |
1153
|
|
|
|
|
|
|
|
1154
|
|
|
|
|
|
|
sub computeMarginalTotals |
1155
|
|
|
|
|
|
|
{ |
1156
|
|
|
|
|
|
|
|
1157
|
1
|
|
|
1
|
1
|
2
|
my ($values)=@_; |
1158
|
|
|
|
|
|
|
|
1159
|
|
|
|
|
|
|
# marginal values |
1160
|
1
|
|
|
|
|
2
|
$np112 = $n1112 + $n2112; |
1161
|
1
|
|
|
|
|
4
|
$np121 = $n1121 + $n2121; |
1162
|
1
|
|
|
|
|
2
|
$np122 = $n1122 + $n2122; |
1163
|
1
|
|
|
|
|
2
|
$np211 = $n1211 + $n2211; |
1164
|
1
|
|
|
|
|
1
|
$np212 = $n1212 + $n2212; |
1165
|
1
|
|
|
|
|
2
|
$np221 = $n1221 + $n2221; |
1166
|
1
|
|
|
|
|
2
|
$np222 = $n1222 + $n2222; |
1167
|
1
|
|
|
|
|
2
|
$n2ppp=$npppp-$n1ppp; |
1168
|
1
|
|
|
|
|
3
|
$np2pp=$npppp-$np1pp; |
1169
|
1
|
|
|
|
|
2
|
$npp2p=$npppp-$npp1p; |
1170
|
1
|
|
|
|
|
2
|
$nppp2=$npppp-$nppp1; |
1171
|
|
|
|
|
|
|
|
1172
|
|
|
|
|
|
|
# n1ppp should be greater than or equal to zero |
1173
|
1
|
50
|
|
|
|
3
|
if ($n1ppp <= 0) { |
1174
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($n1ppp) must not be negative."; |
1175
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 203; return; |
|
0
|
|
|
|
|
0
|
|
1176
|
|
|
|
|
|
|
} |
1177
|
|
|
|
|
|
|
|
1178
|
|
|
|
|
|
|
# n1ppp should be less than or equal to total4grams |
1179
|
1
|
50
|
|
|
|
3
|
if ($n1ppp > $npppp) { |
1180
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($n1ppp) must not exceed total number of 4grams ($npppp)."; |
1181
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 204; return; |
|
0
|
|
|
|
|
0
|
|
1182
|
|
|
|
|
|
|
} |
1183
|
|
|
|
|
|
|
|
1184
|
|
|
|
|
|
|
# np1pp should be greater than or equal to zero |
1185
|
1
|
50
|
|
|
|
3
|
if ($np1pp <= 0) { |
1186
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($np1pp) must not be negative."; |
1187
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 205; return; |
|
0
|
|
|
|
|
0
|
|
1188
|
|
|
|
|
|
|
} |
1189
|
|
|
|
|
|
|
|
1190
|
|
|
|
|
|
|
# np1pp should be less than or equal to total4grams |
1191
|
1
|
50
|
|
|
|
3
|
if ($np1pp > $npppp) { |
1192
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($np1pp) must not exceed total number of 4grams."; |
1193
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 206; return; |
|
0
|
|
|
|
|
0
|
|
1194
|
|
|
|
|
|
|
} |
1195
|
|
|
|
|
|
|
|
1196
|
|
|
|
|
|
|
# npp1p should be greater than or equal to zero |
1197
|
1
|
50
|
|
|
|
3
|
if ($npp1p <= 0) { |
1198
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($npp1p) must not be negative."; |
1199
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 207; return; |
|
0
|
|
|
|
|
0
|
|
1200
|
|
|
|
|
|
|
} |
1201
|
|
|
|
|
|
|
|
1202
|
|
|
|
|
|
|
# npp1p should be less than or equal to total4grams |
1203
|
1
|
50
|
|
|
|
3
|
if ($npp1p > $npppp) { |
1204
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($npp1p) must not exceed total number of 4grams."; |
1205
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 208; return; |
|
0
|
|
|
|
|
0
|
|
1206
|
|
|
|
|
|
|
} |
1207
|
|
|
|
|
|
|
|
1208
|
|
|
|
|
|
|
# nppp1p should be greater than or equal to zero |
1209
|
1
|
50
|
|
|
|
12
|
if ($nppp1 <= 0) { |
1210
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($nppp1) must not be negative."; |
1211
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 209; return; |
|
0
|
|
|
|
|
0
|
|
1212
|
|
|
|
|
|
|
} |
1213
|
|
|
|
|
|
|
|
1214
|
|
|
|
|
|
|
# nppp1p should be less than or equal to total4grams |
1215
|
1
|
50
|
|
|
|
3
|
if ($nppp1 > $npppp) { |
1216
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($nppp1) must not exceed total number of 4grams."; |
1217
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 210; return; |
|
0
|
|
|
|
|
0
|
|
1218
|
|
|
|
|
|
|
} |
1219
|
|
|
|
|
|
|
|
1220
|
1
|
|
|
|
|
3
|
return 1; |
1221
|
|
|
|
|
|
|
} |
1222
|
|
|
|
|
|
|
|
1223
|
|
|
|
|
|
|
1; |
1224
|
|
|
|
|
|
|
__END__ |