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=head1 NAME |
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3
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Text::NSP::Measures::4D - Perl module that provides basic framework for |
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building measure of association for 4-grams. |
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=head1 SYNOPSIS |
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8
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This module can be used as a foundation for building 4-dimensional |
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measures of association that can then be used by statistic.pl. In |
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particular this module provides methods that give convenient access to |
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4-d (i.e., 4-gram) frequency counts as created by count.pl, as well as |
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some degree of error handling that verifies the data. |
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14
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=head3 Basic Usage |
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use Text::NSP::Measures::4D::MI::ll; |
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$ll_value = calculateStatistic( |
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n1111=>8, |
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n1ppp=>306, |
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np1pp=>83, |
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npp1p=>83, |
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nppp1=>57, |
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n11pp=>8, |
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n1p1p=>8, |
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n1pp1=>8, |
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np11p=>83, |
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np1p1=>56, |
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npp11=>56, |
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n111p=>8, |
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n11p1=>8, |
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n1p11=>8, |
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np111=>56, |
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npppp=>15180); |
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35
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36
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if( ($errorCode = getErrorCode())) |
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{ |
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print STDERR $erroCode." - ".getErrorMessage()."\n"; |
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} |
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else |
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{ |
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print getStatisticName."value for 4-gram is ".$ll_value."\n"; |
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} |
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=head1 DESCRIPTION |
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47
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The methods in this module retrieve observed 4-gram frequency counts and |
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marginal totals, and also compute expected values. They also provide |
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support for error checking of the output produced by count.pl. These |
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methods are used in all the 4-gram (4d) measure modules provided in NSP. |
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If you are writing your own 4d measure, you can use these methods as well. |
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53
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With 4-gram or 4d measures we use a 4x4 contingency table to store the |
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frequency counts associated with each word in the trigram, as well as the |
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number of times the trigram occurs. The notation we employ is as follows: |
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56
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57
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Marginal Frequencies: |
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58
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59
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n1ppp = the number of ngrams where the first word is word1. |
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60
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np1pp = the number of ngrams where the second word is word2. |
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61
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npp1p = the number of ngrams where the third word is word3 |
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62
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nppp1 = the number of ngrams where the fourth word is word4 |
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63
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n2ppp = the number of ngrams where the first word is not word1. |
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64
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np2pp = the number of ngrams where the second word is not word2. |
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65
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npp2p = the number of ngrams where the third word is not word3. |
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66
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nppp2 = the number of ngrams where the fourth words is not word4 |
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67
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68
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Observed Frequencies: |
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69
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70
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n1111 = number of times word1, word2 and word3 occur together in |
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71
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their respective positions, joint frequency. |
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72
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n1112 = number of times word1, word 2 and word3 occur in their respective |
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73
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positions but word4 does not. |
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74
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n1121 = number of times word1, word2 and word4 occur in their respective |
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75
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positions but word3 does not. |
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76
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n1122 = number of times word1 and word2 occur in their repsective positions |
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77
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but word3 and word4 do not. |
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78
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n1211 = number of times word1, word3 and word4 occur in their respective |
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79
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positions but word2 does not. |
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80
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n1212 = number of times word1 and word3 occur in their respective positions |
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81
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but word2 and word4 do not. |
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82
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n1221 = number of times word1 and word4 occur in their respective positions |
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83
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but word2 and word3 do not |
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84
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n1222 = number of times word1 occurs in its respective position but word2, |
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85
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word3 and word4 do not. |
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86
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n2111 = number of times word2, word3 and word4 occur in their respective |
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87
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positions but word1 does not. |
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88
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n2112 = number of times word2 and word3 occur in their respective positions |
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89
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but word1 and word4 do not. |
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90
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n2121 = number of times word2 and word4 occur in their respective positions |
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91
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but word1 and word3 do not. |
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92
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n2122 = number of times word2 occurs in its respective position but word1, |
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93
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word3 and word4 do not. |
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n2211 = number of times word3 and word4 occur in their respective positions |
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95
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but word1 and word2 do not. |
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96
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n2212 = number of times word3 occurs in its respective position but word1, |
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97
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word2 and word4 do not. |
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98
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n2221 = number of times word4 occurs in its respective position but word1, |
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99
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word2, and word3 do not. |
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100
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n2222 = number of times neither word1, word2, word3 or word4 occur in their |
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101
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respective positions. |
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102
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103
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Expected Frequencies: |
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104
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105
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m1111 = expected number of times word1, word2 and word3 occur together in |
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106
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their respective positions, joint frequency. |
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107
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m1112 = expected number of times word1, word 2 and word3 occur in their respective |
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108
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positions but word4 does not. |
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109
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m1121 = expected number of times word1, word2 and word4 occur in their respective |
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110
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positions but word3 does not. |
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111
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m1122 = expected number of times word1 and word2 occur in their repsective positions |
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112
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but word3 and word4 do not. |
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113
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m1211 = expected number of times word1, word3 and word4 occur in their respective |
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114
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positions but word2 does not. |
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115
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m1212 = expected number of times word1 and word3 occur in their respective positions |
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116
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but word2 and word4 do not. |
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117
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m1221 = expected number of times word1 and word4 occur in their respective positions |
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118
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but word2 and word3 do not |
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119
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m1222 = expected number of times word1 occurs in its respective position but word2, |
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120
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word3 and word4 do not. |
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121
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m2111 = expected number of times word2, word3 and word4 occur in their respective |
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122
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positions but word1 does not. |
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123
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m2112 = expected number of times word2 and word3 occur in their respective positions |
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124
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but word1 and word4 do not. |
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125
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m2121 = expected number of times word2 and word4 occur in their respective positions |
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126
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but word1 and word3 do not. |
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127
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m2122 = expected number of times word2 occurs in its respective position but word1, |
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128
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word3 and word4 do not. |
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129
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m2211 = expected number of times word3 and word4 occur in their respective positions |
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130
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but word1 and word2 do not. |
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131
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m2212 = expected number of times word3 occurs in its respective position but word1, |
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132
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word2 and word4 do not. |
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m2221 = expected number of times word4 occurs in its respective position but word1, |
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word2, and word3 do not. |
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135
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m2222 = expected number of times neither word1, word2, word3 or word4 occur in their |
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136
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respective positions. |
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=head2 Methods |
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138
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139
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=over |
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141
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=cut |
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143
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144
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package Text::NSP::Measures::4D; |
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146
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147
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2
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2
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1366
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use Text::NSP::Measures; |
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2
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330
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148
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use strict; |
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149
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use Carp; |
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107
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150
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use warnings; |
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91210
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151
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require Exporter; |
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152
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153
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154
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our ($VERSION, @ISA, $marginals, @EXPORT); |
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155
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our ($n1111, $n1112, $n1121, $n1122, $n1211, $n1212, $n1221, $n1222); |
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156
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our ($n2111, $n2112, $n2121, $n2122, $n2211, $n2212, $n2221, $n2222); |
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157
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our ($m1111, $m1112, $m1121, $m1122, $m1211, $m1212, $m1221, $m1222); |
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158
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our ($m2111, $m2112, $m2121, $m2122, $m2211, $m2212, $m2221, $m2222); |
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159
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our ($nppp1, $npp1p, $npp11, $np1pp, $np1p1, $np11p, $np111, $n1ppp); |
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160
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our ($n1pp1, $n1p1p, $n1p11, $n11pp, $n11p1, $n111p, $npppp); |
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161
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our ($nppp2, $npp2p, $npp22, $np2pp, $np2p2, $np22p, $np222, $n2ppp); |
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162
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our ($n2pp2, $n2p2p, $n2p22, $n22pp, $n22p2, $n222p); |
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163
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our ($np112, $np121, $np122, $np211, $np212, $np221); |
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164
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our ($expected_values); |
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165
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our ($n2p1p, $n1p2p, $n2pp1, $n1pp2, $npp21, $npp12, $n21pp, $n12pp); |
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166
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our ($n22p1, $n21p2, $n21p1, $n12p2, $n12p1, $n11p2, $n2p21, $n2p11); |
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167
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our ($n2p12, $n1p22, $n1p21, $n1p12, $np21p, $np12p, $np2p1, $np1p2); |
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168
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our ($n221p, $n212p, $n211p, $n122p, $n121p, $n112p); |
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169
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@ISA = qw(Exporter); |
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170
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171
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@EXPORT = qw(initializeStatistic calculateStatistic |
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172
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getErrorCode getErrorMessage getStatisticName |
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173
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$n1111 $n1112 $n1121 $n1122 $n1211 $n1212 $n1221 $n1222 |
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174
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$n2111 $n2112 $n2121 $n2122 $n2211 $n2212 $n2221 $n2222 |
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175
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$m1111 $m1112 $m1121 $m1122 $m1211 $m1212 $m1221 $m1222 |
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176
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$m2111 $m2112 $m2121 $m2122 $m2211 $m2212 $m2221 $m2222 |
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177
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$nppp1 $npp1p $npp11 $np1pp $np1p1 $np11p $np111 $n1ppp |
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178
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$n1pp1 $n1p1p $n1p11 $n11pp $n11p1 $n111p $npppp |
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179
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$nppp2 $npp2p $npp22 $np2pp $np2p2 $np22p $np222 $n2ppp |
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180
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$n2pp2 $n2p2p $n2p22 $n22pp $n22p2 $n222p |
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181
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$np112 $np121 $np122 $np211 $np212 $np221 $expected_values |
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182
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$errorCodeNumber $errorMessage); |
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183
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184
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$VERSION = '0.97'; |
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185
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186
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187
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=item computeObservedValues($count_values) - A method to |
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188
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compute observed values, and also to verify that the |
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189
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computed Observed values are correct, That is they are |
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190
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positive, less than the marginal totals and the total |
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191
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bigram count. |
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192
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193
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INPUT PARAMS : $count_values .. Reference to an hash consisting |
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194
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of the count values passed to |
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195
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the calculateStatistic() method. |
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196
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197
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RETURN VALUES : 1/undef ..returns '1' to indicate success |
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198
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and an undefined(NULL) value to indicate |
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199
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failure. |
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200
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201
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=cut |
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202
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203
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sub computeObservedValues |
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204
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{ |
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205
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16
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16
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1
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21
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my ($values) = @_; |
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206
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207
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16
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31
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$n1111=$values->{n1111}; |
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208
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16
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104
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$n1ppp=$values->{n1ppp}; |
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209
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16
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21
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$np1pp=$values->{np1pp}; |
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210
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16
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20
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$npp1p=$values->{npp1p}; |
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211
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16
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20
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$nppp1=$values->{nppp1}; |
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212
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16
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334
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$n11pp=$values->{n11pp}; |
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213
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16
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20
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$n1p1p=$values->{n1p1p}; |
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214
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16
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22
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$n1pp1=$values->{n1pp1}; |
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215
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16
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18
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$np11p=$values->{np11p}; |
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216
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16
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22
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$np1p1=$values->{np1p1}; |
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217
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16
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21
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$npp11=$values->{npp11}; |
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218
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16
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38
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$n111p=$values->{n111p}; |
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219
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16
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18
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$n11p1=$values->{n11p1}; |
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220
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16
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20
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$n1p11=$values->{n1p11}; |
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221
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16
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22
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$np111=$values->{np111}; |
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222
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16
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20
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$npppp=$values->{npppp}; |
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223
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224
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# we do not have the model fully implemented yet |
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225
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#$expected_values=$values->{expected_values}; |
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226
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227
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# Check that all the values are defined |
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228
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16
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100
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214
|
if(!defined $values->{n1111}) |
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229
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{ |
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230
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1
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2
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$errorMessage = "Required 4-gram (1,1,1,1) not passed"; |
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231
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1
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2
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$errorCodeNumber = 200; |
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232
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1
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4
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return; |
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233
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} |
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234
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15
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100
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31
|
if(!defined $values->{n1ppp}) |
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235
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{ |
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236
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1
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2
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$errorMessage = "Required 4-gram (1,p,p,p) not passed"; |
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237
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1
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8
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$errorCodeNumber = 200; |
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238
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1
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5
|
return; |
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239
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} |
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240
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14
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100
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|
32
|
if(!defined $values->{np1pp}) |
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241
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{ |
|
242
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1
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5
|
$errorMessage = "Required 4-gram (p,1,p,p) not passed"; |
|
243
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1
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2
|
$errorCodeNumber = 200; |
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244
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1
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5
|
return; |
|
245
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} |
|
246
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13
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50
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33
|
if(!defined $values->{npp1p}) |
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247
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{ |
|
248
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0
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0
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$errorMessage = "Required 4-gram (p,p,1,p) not passed"; |
|
249
|
0
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0
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$errorCodeNumber = 200; |
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250
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0
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0
|
return; |
|
251
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} |
|
252
|
13
|
100
|
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|
29
|
if(!defined $values->{nppp1}) |
|
253
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{ |
|
254
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1
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4
|
$errorMessage = "Required 4-gram (p,p,p,1) not passed"; |
|
255
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1
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2
|
$errorCodeNumber = 200; |
|
256
|
1
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4
|
return; |
|
257
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} |
|
258
|
12
|
50
|
|
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|
28
|
if(!defined $values->{n11pp}) |
|
259
|
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{ |
|
260
|
0
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0
|
$errorMessage = "Required 4-gram (1,1,p,p) not passed"; |
|
261
|
0
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0
|
$errorCodeNumber = 200; |
|
262
|
0
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|
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0
|
return; |
|
263
|
|
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|
|
} |
|
264
|
12
|
50
|
|
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|
32
|
if(!defined $values->{n1p1p}) |
|
265
|
|
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|
|
{ |
|
266
|
0
|
|
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|
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0
|
$errorMessage = "Required 4-gram (1,p,1,p) not passed"; |
|
267
|
0
|
|
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|
0
|
$errorCodeNumber = 200; |
|
268
|
0
|
|
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|
|
0
|
return; |
|
269
|
|
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|
|
} |
|
270
|
12
|
50
|
|
|
|
30
|
if(!defined $values->{n1pp1}) |
|
271
|
|
|
|
|
|
|
{ |
|
272
|
0
|
|
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|
|
0
|
$errorMessage = "Required 4-gram (1,p,p,1) not passed"; |
|
273
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
|
274
|
0
|
|
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|
|
0
|
return; |
|
275
|
|
|
|
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|
|
} |
|
276
|
12
|
50
|
|
|
|
30
|
if(!defined $values->{np11p}) |
|
277
|
|
|
|
|
|
|
{ |
|
278
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (p,1,1,p) not passed"; |
|
279
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
|
280
|
0
|
|
|
|
|
0
|
return; |
|
281
|
|
|
|
|
|
|
} |
|
282
|
12
|
50
|
|
|
|
27
|
if(!defined $values->{np1p1}) |
|
283
|
|
|
|
|
|
|
{ |
|
284
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (p,1,p,1) not passed"; |
|
285
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
|
286
|
0
|
|
|
|
|
0
|
return; |
|
287
|
|
|
|
|
|
|
} |
|
288
|
12
|
100
|
|
|
|
23
|
if(!defined $values->{npp11}) |
|
289
|
|
|
|
|
|
|
{ |
|
290
|
1
|
|
|
|
|
3
|
$errorMessage = "Required 4-gram (p,p,1,1) not passed"; |
|
291
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
|
292
|
1
|
|
|
|
|
4
|
return; |
|
293
|
|
|
|
|
|
|
} |
|
294
|
11
|
50
|
|
|
|
26
|
if(!defined $values->{n111p}) |
|
295
|
|
|
|
|
|
|
{ |
|
296
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (1,1,1,p) not passed"; |
|
297
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
|
298
|
0
|
|
|
|
|
0
|
return; |
|
299
|
|
|
|
|
|
|
} |
|
300
|
11
|
100
|
|
|
|
23
|
if(!defined $values->{n11p1}) |
|
301
|
|
|
|
|
|
|
{ |
|
302
|
1
|
|
|
|
|
2
|
$errorMessage = "Required 4-gram (1,1,p,1) not passed"; |
|
303
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
|
304
|
1
|
|
|
|
|
6
|
return; |
|
305
|
|
|
|
|
|
|
} |
|
306
|
10
|
50
|
|
|
|
23
|
if(!defined $values->{n1p11}) |
|
307
|
|
|
|
|
|
|
{ |
|
308
|
0
|
|
|
|
|
0
|
$errorMessage = "Required 4-gram (1,p,1,1) not passed"; |
|
309
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 200; |
|
310
|
0
|
|
|
|
|
0
|
return; |
|
311
|
|
|
|
|
|
|
} |
|
312
|
10
|
100
|
|
|
|
20
|
if(!defined $values->{np111}) |
|
313
|
|
|
|
|
|
|
{ |
|
314
|
1
|
|
|
|
|
4
|
$errorMessage = "Required 4-gram (p,1,1,1) not passed"; |
|
315
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
|
316
|
1
|
|
|
|
|
4
|
return; |
|
317
|
|
|
|
|
|
|
} |
|
318
|
9
|
100
|
|
|
|
20
|
if(!defined $values->{npppp}) |
|
319
|
|
|
|
|
|
|
{ |
|
320
|
1
|
|
|
|
|
4
|
$errorMessage = "Required 4-gram (p,p,p,p) not passed"; |
|
321
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 200; |
|
322
|
1
|
|
|
|
|
5
|
return; |
|
323
|
|
|
|
|
|
|
} |
|
324
|
|
|
|
|
|
|
|
|
325
|
|
|
|
|
|
|
# n1111 should be greater than equal to zero |
|
326
|
8
|
100
|
|
|
|
19
|
if ($n1111 <= 0) { |
|
327
|
1
|
|
|
|
|
8
|
$errorMessage = "Frequency value ($n1111) must not be negative."; |
|
328
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 201; return; |
|
|
1
|
|
|
|
|
5
|
|
|
329
|
|
|
|
|
|
|
} |
|
330
|
|
|
|
|
|
|
|
|
331
|
|
|
|
|
|
|
# n1111 frequency should be less than or equal to total 4grams |
|
332
|
7
|
100
|
|
|
|
14
|
if ($n1111 > $npppp) { |
|
333
|
1
|
|
|
|
|
4
|
$errorMessage = "Frequency value ($n1111) must not exceed total number of 4grams."; |
|
334
|
1
|
|
|
|
|
2
|
$errorCodeNumber = 201; return; |
|
|
1
|
|
|
|
|
5
|
|
|
335
|
|
|
|
|
|
|
} |
|
336
|
|
|
|
|
|
|
|
|
337
|
|
|
|
|
|
|
# joint frequency n1111 should be less than or equal to the marginal totals |
|
338
|
6
|
100
|
66
|
|
|
58
|
if ($n1111 > $n1ppp || $n1111 > $np1pp || $n1111 > $npp1p || $n1111 > $nppp1) { |
|
|
|
|
66
|
|
|
|
|
|
|
|
|
66
|
|
|
|
|
|
339
|
2
|
|
|
|
|
9
|
$errorMessage = "Frequency value of ngram ($n1111) must not exceed the marginal totals."; |
|
340
|
2
|
|
|
|
|
3
|
$errorCodeNumber = 202; return; |
|
|
2
|
|
|
|
|
9
|
|
|
341
|
|
|
|
|
|
|
} |
|
342
|
|
|
|
|
|
|
|
|
343
|
|
|
|
|
|
|
# n1ppp should be greater than equal to zero |
|
344
|
4
|
50
|
|
|
|
10
|
if ($n1ppp <= 0) { |
|
345
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1ppp) must not be negative."; |
|
346
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
347
|
|
|
|
|
|
|
} |
|
348
|
|
|
|
|
|
|
|
|
349
|
|
|
|
|
|
|
# n1ppp frequency should be less than or equal to total 4grams |
|
350
|
4
|
50
|
|
|
|
10
|
if ($n1ppp > $npppp) { |
|
351
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1ppp) must not exceed total number of 4grams."; |
|
352
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
353
|
|
|
|
|
|
|
} |
|
354
|
|
|
|
|
|
|
|
|
355
|
|
|
|
|
|
|
# np1pp should be greater than equal to zero |
|
356
|
4
|
50
|
|
|
|
11
|
if ($np1pp <= 0) { |
|
357
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np1pp) must not be negative."; |
|
358
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
359
|
|
|
|
|
|
|
} |
|
360
|
|
|
|
|
|
|
|
|
361
|
|
|
|
|
|
|
# np1pp frequency should be less than or equal to total 4grams |
|
362
|
4
|
50
|
|
|
|
11
|
if ($np1pp > $npppp) { |
|
363
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np1pp) must not exceed total number of 4grams."; |
|
364
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
365
|
|
|
|
|
|
|
} |
|
366
|
|
|
|
|
|
|
|
|
367
|
|
|
|
|
|
|
# npp1p should be greater than equal to zero |
|
368
|
4
|
50
|
|
|
|
9
|
if ($npp1p <= 0) { |
|
369
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($npp1p) must not be negative."; |
|
370
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
371
|
|
|
|
|
|
|
} |
|
372
|
|
|
|
|
|
|
|
|
373
|
|
|
|
|
|
|
# npp1p frequency should be less than or equal to total 4grams |
|
374
|
4
|
50
|
|
|
|
8
|
if ($npp1p > $npppp) { |
|
375
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($npp1p) must not exceed total number of 4grams."; |
|
376
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
377
|
|
|
|
|
|
|
} |
|
378
|
|
|
|
|
|
|
|
|
379
|
|
|
|
|
|
|
# nppp1 should be greater than equal to zero |
|
380
|
4
|
50
|
|
|
|
10
|
if ($nppp1 <= 0) { |
|
381
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($nppp1) must not be negative."; |
|
382
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
383
|
|
|
|
|
|
|
} |
|
384
|
|
|
|
|
|
|
|
|
385
|
|
|
|
|
|
|
# nppp1 frequency should be less than or equal to total 4grams |
|
386
|
4
|
100
|
|
|
|
9
|
if ($nppp1 > $npppp) { |
|
387
|
1
|
|
|
|
|
6
|
$errorMessage = "Frequency value ($nppp1) must not exceed total number of 4grams."; |
|
388
|
1
|
|
|
|
|
19
|
$errorCodeNumber = 201; return; |
|
|
1
|
|
|
|
|
3
|
|
|
389
|
|
|
|
|
|
|
} |
|
390
|
|
|
|
|
|
|
|
|
391
|
|
|
|
|
|
|
# n11pp should be greater than equal to zero |
|
392
|
3
|
50
|
|
|
|
12
|
if ($n11pp <= 0) { |
|
393
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n11pp) must not be negative."; |
|
394
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
395
|
|
|
|
|
|
|
} |
|
396
|
|
|
|
|
|
|
|
|
397
|
|
|
|
|
|
|
# n11pp frequency should be less than or equal to total 4grams |
|
398
|
3
|
50
|
|
|
|
8
|
if ($n11pp > $npppp) { |
|
399
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n11pp) must not exceed total number of 4grams."; |
|
400
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
401
|
|
|
|
|
|
|
} |
|
402
|
|
|
|
|
|
|
|
|
403
|
|
|
|
|
|
|
# n1p1p should be greater than equal to zero |
|
404
|
3
|
50
|
|
|
|
8
|
if ($n1p1p <= 0) { |
|
405
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1p1p) must not be negative."; |
|
406
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
407
|
|
|
|
|
|
|
} |
|
408
|
|
|
|
|
|
|
|
|
409
|
|
|
|
|
|
|
# n1p1p frequency should be less than or equal to total 4grams |
|
410
|
3
|
50
|
|
|
|
8
|
if ($n1p1p > $npppp) { |
|
411
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1p1p) must not exceed total number of 4grams."; |
|
412
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
413
|
|
|
|
|
|
|
} |
|
414
|
|
|
|
|
|
|
|
|
415
|
|
|
|
|
|
|
# n1pp1 should be greater than equal to zero |
|
416
|
3
|
50
|
|
|
|
9
|
if ($n1pp1 <= 0) { |
|
417
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1pp1) must not be negative."; |
|
418
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
419
|
|
|
|
|
|
|
} |
|
420
|
|
|
|
|
|
|
|
|
421
|
|
|
|
|
|
|
# n1pp1 frequency should be less than or equal to total 4grams |
|
422
|
3
|
50
|
|
|
|
8
|
if ($n1pp1 > $npppp) { |
|
423
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1pp1) must not exceed total number of 4grams."; |
|
424
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
425
|
|
|
|
|
|
|
} |
|
426
|
|
|
|
|
|
|
|
|
427
|
|
|
|
|
|
|
# np11p should be greater than equal to zero |
|
428
|
3
|
50
|
|
|
|
7
|
if ($np11p <= 0) { |
|
429
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np11p) must not be negative."; |
|
430
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
431
|
|
|
|
|
|
|
} |
|
432
|
|
|
|
|
|
|
|
|
433
|
|
|
|
|
|
|
# np11p frequency should be less than or equal to total 4grams |
|
434
|
3
|
50
|
|
|
|
7
|
if ($np11p > $npppp) { |
|
435
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np11p) must not exceed total number of 4grams."; |
|
436
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
437
|
|
|
|
|
|
|
} |
|
438
|
|
|
|
|
|
|
|
|
439
|
|
|
|
|
|
|
# np1p1 should be greater than equal to zero |
|
440
|
3
|
50
|
|
|
|
18
|
if ($np1p1 <= 0) { |
|
441
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np1p1) must not be negative."; |
|
442
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
443
|
|
|
|
|
|
|
} |
|
444
|
|
|
|
|
|
|
|
|
445
|
|
|
|
|
|
|
# np1p1 frequency should be less than or equal to total 4grams |
|
446
|
3
|
50
|
|
|
|
13
|
if ($np1p1 > $npppp) { |
|
447
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np1p1) must not exceed total number of 4grams."; |
|
448
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
449
|
|
|
|
|
|
|
} |
|
450
|
|
|
|
|
|
|
|
|
451
|
|
|
|
|
|
|
# npp11 should be greater than equal to zero |
|
452
|
3
|
50
|
|
|
|
30
|
if ($npp11 <= 0) { |
|
453
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($npp11) must not be negative."; |
|
454
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
455
|
|
|
|
|
|
|
} |
|
456
|
|
|
|
|
|
|
|
|
457
|
|
|
|
|
|
|
# npp11 frequency should be less than or equal to total 4grams |
|
458
|
3
|
50
|
|
|
|
8
|
if ($npp11 > $npppp) { |
|
459
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($npp11) must not exceed total number of 4grams."; |
|
460
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
461
|
|
|
|
|
|
|
} |
|
462
|
|
|
|
|
|
|
|
|
463
|
|
|
|
|
|
|
# n111p should be greater than equal to zero |
|
464
|
3
|
50
|
|
|
|
8
|
if ($n111p <= 0) { |
|
465
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n111p) must not be negative."; |
|
466
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
467
|
|
|
|
|
|
|
} |
|
468
|
|
|
|
|
|
|
|
|
469
|
|
|
|
|
|
|
# n111p frequency should be less than or equal to total 4grams |
|
470
|
3
|
50
|
|
|
|
9
|
if ($n111p > $npppp) { |
|
471
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n111p) must not exceed total number of 4grams."; |
|
472
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
473
|
|
|
|
|
|
|
} |
|
474
|
|
|
|
|
|
|
|
|
475
|
|
|
|
|
|
|
# n11p1 should be greater than equal to zero |
|
476
|
3
|
50
|
|
|
|
8
|
if ($n11p1 <= 0) { |
|
477
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n11p1) must not be negative."; |
|
478
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
479
|
|
|
|
|
|
|
} |
|
480
|
|
|
|
|
|
|
|
|
481
|
|
|
|
|
|
|
# n11p1 frequency should be less than or equal to total 4grams |
|
482
|
3
|
50
|
|
|
|
10
|
if ($n11p1 > $npppp) { |
|
483
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n11p1) must not exceed total number of 4grams."; |
|
484
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
485
|
|
|
|
|
|
|
} |
|
486
|
|
|
|
|
|
|
|
|
487
|
|
|
|
|
|
|
# n1p11 should be greater than equal to zero |
|
488
|
3
|
50
|
|
|
|
10
|
if ($n1p11 <= 0) { |
|
489
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1p11) must not be negative."; |
|
490
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
491
|
|
|
|
|
|
|
} |
|
492
|
|
|
|
|
|
|
|
|
493
|
|
|
|
|
|
|
# n1p11 frequency should be less than or equal to total 4grams |
|
494
|
3
|
50
|
|
|
|
1102
|
if ($n1p11 > $npppp) { |
|
495
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($n1p11) must not exceed total number of 4grams."; |
|
496
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
497
|
|
|
|
|
|
|
} |
|
498
|
|
|
|
|
|
|
|
|
499
|
|
|
|
|
|
|
# np111 should be greater than equal to zero |
|
500
|
3
|
50
|
|
|
|
85
|
if ($np111 <= 0) { |
|
501
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np111) must not be negative."; |
|
502
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
503
|
|
|
|
|
|
|
} |
|
504
|
|
|
|
|
|
|
|
|
505
|
|
|
|
|
|
|
# np111 frequency should be less than or equal to total 4grams |
|
506
|
3
|
50
|
|
|
|
7
|
if ($np111 > $npppp) { |
|
507
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value ($np111) must not exceed total number of 4grams."; |
|
508
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 201; return; |
|
|
0
|
|
|
|
|
0
|
|
|
509
|
|
|
|
|
|
|
} |
|
510
|
|
|
|
|
|
|
|
|
511
|
|
|
|
|
|
|
|
|
512
|
|
|
|
|
|
|
# observed |
|
513
|
3
|
|
|
|
|
9
|
$n1112=$n111p-$n1111; |
|
514
|
3
|
|
|
|
|
5
|
$n1121=$n11p1-$n1111; |
|
515
|
|
|
|
|
|
|
|
|
516
|
|
|
|
|
|
|
|
|
517
|
3
|
|
|
|
|
7
|
$n1122=$n11pp-$n1111-$n1121-$n1112; |
|
518
|
3
|
|
|
|
|
6
|
$n2111=$np111-$n1111; |
|
519
|
|
|
|
|
|
|
|
|
520
|
3
|
|
|
|
|
4
|
$n1211=$n1p11-$n1111; |
|
521
|
3
|
|
|
|
|
6
|
$n1212=$n1p1p-$n1111-$n1112-$n1211; |
|
522
|
3
|
|
|
|
|
7
|
$n1221=$n1pp1-$n1111-$n1211-$n1121; |
|
523
|
3
|
|
|
|
|
6
|
$n1222=$n1ppp-$n1111-$n1211-$n1121-$n1112; |
|
524
|
|
|
|
|
|
|
|
|
525
|
3
|
|
|
|
|
6
|
$n2112=$np11p-$n1111-$n2111-$n1112; |
|
526
|
3
|
|
|
|
|
6
|
$n2121=$np1p1-$n1111-$n2111-$n1121; |
|
527
|
3
|
|
|
|
|
5
|
$n2122=$np1pp-$n1111-$n2111-$n1121-$n1112; |
|
528
|
3
|
|
|
|
|
6
|
$n2211=$npp11-$n1111-$n2111-$n1211; |
|
529
|
|
|
|
|
|
|
|
|
530
|
3
|
|
|
|
|
6
|
$n2212=$npp1p-$n1111-$n2111-$n1211-$n1112; |
|
531
|
|
|
|
|
|
|
|
|
532
|
3
|
|
|
|
|
7
|
$n2221=$nppp1-$n1111-$n2111-$n1211-$n1121; |
|
533
|
3
|
|
|
|
|
7
|
$n2222=$npppp-$n1111-$n2111-$n1211-$n1121-$n1112; |
|
534
|
|
|
|
|
|
|
|
|
535
|
|
|
|
|
|
|
|
|
536
|
|
|
|
|
|
|
# n1112 should be greater than equal to zero |
|
537
|
3
|
50
|
|
|
|
32
|
if ($n1112 < 0) { |
|
538
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1112 ($n1112) must not be negative."; |
|
539
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
540
|
|
|
|
|
|
|
} |
|
541
|
|
|
|
|
|
|
|
|
542
|
|
|
|
|
|
|
# n1112 frequency should be less than or equal to total4grams |
|
543
|
3
|
50
|
|
|
|
48
|
if ($n1112 > $npppp) { |
|
544
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1112 ($n1112) must not exceed total number of 4grams."; |
|
545
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
546
|
|
|
|
|
|
|
} |
|
547
|
|
|
|
|
|
|
|
|
548
|
|
|
|
|
|
|
# n1121 should be greater than equal to zero |
|
549
|
3
|
50
|
|
|
|
9
|
if ($n1121 < 0) { |
|
550
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1121 ($n1121) must not be negative."; |
|
551
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
552
|
|
|
|
|
|
|
} |
|
553
|
|
|
|
|
|
|
|
|
554
|
|
|
|
|
|
|
# n1121 frequency should be less than or equal to total 4grams |
|
555
|
3
|
50
|
|
|
|
8
|
if ($n1121 > $npppp) { |
|
556
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1121 ($n1121) must not exceed total number of 4grams."; |
|
557
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
558
|
|
|
|
|
|
|
} |
|
559
|
|
|
|
|
|
|
|
|
560
|
|
|
|
|
|
|
# n1122 should be greater than equal to zero |
|
561
|
3
|
50
|
|
|
|
6
|
if ($n1122 < 0) { |
|
562
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1122 ($n1122) must not be negative."; |
|
563
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
564
|
|
|
|
|
|
|
} |
|
565
|
|
|
|
|
|
|
|
|
566
|
|
|
|
|
|
|
# n1122 frequency should be less than or equal to total 4grams |
|
567
|
3
|
50
|
|
|
|
7
|
if ($n1122 > $npppp) { |
|
568
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1122 ($n1122) must not exceed total number of 4grams."; |
|
569
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
570
|
|
|
|
|
|
|
} |
|
571
|
|
|
|
|
|
|
|
|
572
|
|
|
|
|
|
|
# n1211 should be greater than equal to zero |
|
573
|
3
|
50
|
|
|
|
6
|
if ($n1211 < 0) { |
|
574
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1211 ($n1211) must not be negative."; |
|
575
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
576
|
|
|
|
|
|
|
} |
|
577
|
|
|
|
|
|
|
|
|
578
|
|
|
|
|
|
|
# n1211 frequency should be less than or equal to total 4grams |
|
579
|
3
|
50
|
|
|
|
7
|
if ($n1211 > $npppp) { |
|
580
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1211 ($n1211) must not exceed total number of 4grams."; |
|
581
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
582
|
|
|
|
|
|
|
} |
|
583
|
|
|
|
|
|
|
|
|
584
|
|
|
|
|
|
|
# n1221 should be greater than equal to zero |
|
585
|
3
|
50
|
|
|
|
8
|
if ($n1221 < 0) { |
|
586
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1221 ($n1221) must not be negative."; |
|
587
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
588
|
|
|
|
|
|
|
} |
|
589
|
|
|
|
|
|
|
|
|
590
|
|
|
|
|
|
|
# n1221 frequency should be less than or equal to total 4grams |
|
591
|
3
|
50
|
|
|
|
6
|
if ($n1221 > $npppp) { |
|
592
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1221 ($n1221) must not exceed total number of 4grams."; |
|
593
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
594
|
|
|
|
|
|
|
} |
|
595
|
|
|
|
|
|
|
|
|
596
|
|
|
|
|
|
|
# n1222 should be greater than equal to zero |
|
597
|
3
|
50
|
|
|
|
7
|
if ($n1222 < 0) { |
|
598
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1222 ($n1222) must not be negative."; |
|
599
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
600
|
|
|
|
|
|
|
} |
|
601
|
|
|
|
|
|
|
|
|
602
|
|
|
|
|
|
|
# n1222 frequency should be less than or equal to total 4grams |
|
603
|
3
|
50
|
|
|
|
10
|
if ($n1222 > $npppp) { |
|
604
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n1222 ($n1222) must not exceed total number of 4grams."; |
|
605
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
606
|
|
|
|
|
|
|
} |
|
607
|
|
|
|
|
|
|
|
|
608
|
|
|
|
|
|
|
# n2111 should be greater than equal to zero |
|
609
|
3
|
50
|
|
|
|
7
|
if ($n2111 < 0) { |
|
610
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2111 ($n2111) must not be negative."; |
|
611
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
612
|
|
|
|
|
|
|
} |
|
613
|
|
|
|
|
|
|
|
|
614
|
|
|
|
|
|
|
# n2111 frequency should be less than or equal to total 4grams |
|
615
|
3
|
50
|
|
|
|
7
|
if ($n2111 > $npppp) { |
|
616
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2111 ($n2111) must not exceed total number of 4grams."; |
|
617
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
618
|
|
|
|
|
|
|
} |
|
619
|
|
|
|
|
|
|
|
|
620
|
|
|
|
|
|
|
# n2112 should be greater than equal to zero |
|
621
|
3
|
100
|
|
|
|
7
|
if ($n2112 < 0) { |
|
622
|
2
|
|
|
|
|
9
|
$errorMessage = "Frequency value n2112 ($n2112) must not be negative."; |
|
623
|
2
|
|
|
|
|
4
|
$errorCodeNumber = 202; return; |
|
|
2
|
|
|
|
|
8
|
|
|
624
|
|
|
|
|
|
|
} |
|
625
|
|
|
|
|
|
|
|
|
626
|
|
|
|
|
|
|
# n2112 frequency should be less than or equal to total 4grams |
|
627
|
1
|
50
|
|
|
|
3
|
if ($n2112 > $npppp) { |
|
628
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2112 ($n2112) must not exceed total number of 4grams."; |
|
629
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
630
|
|
|
|
|
|
|
} |
|
631
|
|
|
|
|
|
|
|
|
632
|
|
|
|
|
|
|
# n2121 should be greater than equal to zero |
|
633
|
1
|
50
|
|
|
|
4
|
if ($n2121 < 0) { |
|
634
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2121 ($n2121) must not be negative."; |
|
635
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
636
|
|
|
|
|
|
|
} |
|
637
|
|
|
|
|
|
|
|
|
638
|
|
|
|
|
|
|
# n2121 frequency should be less than or equal to total 4grams |
|
639
|
1
|
50
|
|
|
|
3
|
if ($n2121 > $npppp) { |
|
640
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2121 ($n2121) must not exceed total number of 4grams."; |
|
641
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
642
|
|
|
|
|
|
|
} |
|
643
|
|
|
|
|
|
|
|
|
644
|
|
|
|
|
|
|
# n2122 should be greater than equal to zero |
|
645
|
1
|
50
|
|
|
|
4
|
if ($n2122 < 0) { |
|
646
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2122 ($n2122) must not be negative."; |
|
647
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
648
|
|
|
|
|
|
|
} |
|
649
|
|
|
|
|
|
|
|
|
650
|
|
|
|
|
|
|
# n2122 frequency should be less than or equal to total 4grams |
|
651
|
1
|
50
|
|
|
|
3
|
if ($n2122 > $npppp) { |
|
652
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2122 ($n2122) must not exceed total number of 4grams."; |
|
653
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
654
|
|
|
|
|
|
|
} |
|
655
|
|
|
|
|
|
|
|
|
656
|
|
|
|
|
|
|
|
|
657
|
|
|
|
|
|
|
# n2211 should be greater than equal to zero |
|
658
|
1
|
50
|
|
|
|
5
|
if ($n2211 < 0) { |
|
659
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2211 ($n2211) must not be negative."; |
|
660
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
661
|
|
|
|
|
|
|
} |
|
662
|
|
|
|
|
|
|
|
|
663
|
|
|
|
|
|
|
# n2211 frequency should be less than or equal to total 4grams |
|
664
|
1
|
50
|
|
|
|
3
|
if ($n2211 > $npppp) { |
|
665
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2211 ($n2211) must not exceed total number of 4grams."; |
|
666
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
667
|
|
|
|
|
|
|
} |
|
668
|
|
|
|
|
|
|
|
|
669
|
|
|
|
|
|
|
|
|
670
|
|
|
|
|
|
|
# n2212 should be greater than equal to zero |
|
671
|
1
|
50
|
|
|
|
4
|
if ($n2212 < 0) { |
|
672
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2212 ($n2212) must not be negative."; |
|
673
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
674
|
|
|
|
|
|
|
} |
|
675
|
|
|
|
|
|
|
|
|
676
|
|
|
|
|
|
|
# n2212 frequency should be less than or equal to total 4grams |
|
677
|
1
|
50
|
|
|
|
3
|
if ($n2212 > $npppp) { |
|
678
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2212 ($n2212) must not exceed total number of 4grams."; |
|
679
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
680
|
|
|
|
|
|
|
} |
|
681
|
|
|
|
|
|
|
|
|
682
|
|
|
|
|
|
|
# n2221 should be greater than equal to zero |
|
683
|
1
|
50
|
|
|
|
11
|
if ($n2221 < 0) { |
|
684
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2221 ($n2221) must not be negative."; |
|
685
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
686
|
|
|
|
|
|
|
} |
|
687
|
|
|
|
|
|
|
|
|
688
|
|
|
|
|
|
|
# n2221 frequency should be less than or equal to total 4grams |
|
689
|
1
|
50
|
|
|
|
4
|
if ($n2221 > $npppp) { |
|
690
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2221 ($n2221) must not exceed total number of 4grams."; |
|
691
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
692
|
|
|
|
|
|
|
} |
|
693
|
|
|
|
|
|
|
|
|
694
|
|
|
|
|
|
|
|
|
695
|
|
|
|
|
|
|
# n2222 should be greater than equal to zero |
|
696
|
1
|
50
|
|
|
|
3
|
if ($n2222 < 0) { |
|
697
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2222 ($n2222) must not be negative."; |
|
698
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
699
|
|
|
|
|
|
|
} |
|
700
|
|
|
|
|
|
|
|
|
701
|
|
|
|
|
|
|
# n2222 frequency should be less than or equal to total 4grams |
|
702
|
1
|
50
|
|
|
|
4
|
if ($n2222 > $npppp) { |
|
703
|
0
|
|
|
|
|
0
|
$errorMessage = "Frequency value n2222 ($n2222) must not exceed total number of 4grams."; |
|
704
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 202; return; |
|
|
0
|
|
|
|
|
0
|
|
|
705
|
|
|
|
|
|
|
} |
|
706
|
|
|
|
|
|
|
|
|
707
|
1
|
|
|
|
|
5
|
return 1; |
|
708
|
|
|
|
|
|
|
} |
|
709
|
|
|
|
|
|
|
|
|
710
|
|
|
|
|
|
|
|
|
711
|
|
|
|
|
|
|
|
|
712
|
|
|
|
|
|
|
|
|
713
|
|
|
|
|
|
|
|
|
714
|
|
|
|
|
|
|
=item computeExpectedValues($count_values) - A method to compute |
|
715
|
|
|
|
|
|
|
expected values. |
|
716
|
|
|
|
|
|
|
|
|
717
|
|
|
|
|
|
|
INPUT PARAMS : $count_values .. Reference to an hash consisting |
|
718
|
|
|
|
|
|
|
of the count output. |
|
719
|
|
|
|
|
|
|
|
|
720
|
|
|
|
|
|
|
RETURN VALUES : 1/undef ..returns '1' to indicate success |
|
721
|
|
|
|
|
|
|
and an undefined(NULL) value to indicate |
|
722
|
|
|
|
|
|
|
failure. |
|
723
|
|
|
|
|
|
|
|
|
724
|
|
|
|
|
|
|
=cut |
|
725
|
|
|
|
|
|
|
|
|
726
|
|
|
|
|
|
|
sub computeExpectedValues |
|
727
|
|
|
|
|
|
|
{ |
|
728
|
1
|
|
|
1
|
1
|
3
|
my ($values)=@_; |
|
729
|
|
|
|
|
|
|
|
|
730
|
1
|
50
|
|
|
|
5
|
if(! (defined $expected_values) ) { |
|
731
|
1
|
|
|
|
|
3
|
$expected_values = "0 1 2 3"; |
|
732
|
|
|
|
|
|
|
} |
|
733
|
|
|
|
|
|
|
|
|
734
|
|
|
|
|
|
|
# the expected values can be calculated based on |
|
735
|
|
|
|
|
|
|
# a number of different models. I have the code |
|
736
|
|
|
|
|
|
|
# for the models here but we do not have the option |
|
737
|
|
|
|
|
|
|
# to change them implemented in the statistic.pl |
|
738
|
|
|
|
|
|
|
# |
|
739
|
|
|
|
|
|
|
|
|
740
|
|
|
|
|
|
|
|
|
741
|
|
|
|
|
|
|
# calculate the expected values for : "0 123" check |
|
742
|
1
|
50
|
|
|
|
44
|
if($expected_values eq "0 123") { |
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
743
|
|
|
|
|
|
|
#print "0 123\n"; |
|
744
|
|
|
|
|
|
|
|
|
745
|
0
|
|
|
|
|
0
|
$np111 = $n1111 + $n2111; |
|
746
|
0
|
|
|
|
|
0
|
$np112 = $n1112 + $n2112; |
|
747
|
0
|
|
|
|
|
0
|
$np121 = $n1121 + $n2121; |
|
748
|
0
|
|
|
|
|
0
|
$np122 = $n1122 + $n2122; |
|
749
|
0
|
|
|
|
|
0
|
$np211 = $n1211 + $n2211; |
|
750
|
0
|
|
|
|
|
0
|
$np212 = $n1212 + $n2212; |
|
751
|
0
|
|
|
|
|
0
|
$np221 = $n1221 + $n2221; |
|
752
|
0
|
|
|
|
|
0
|
$np222 = $n1222 + $n2222; |
|
753
|
|
|
|
|
|
|
|
|
754
|
0
|
|
|
|
|
0
|
$m1111=$n1ppp*$np111/($npppp); |
|
755
|
0
|
|
|
|
|
0
|
$m1112=$n1ppp*$np112/($npppp); |
|
756
|
0
|
|
|
|
|
0
|
$m1121=$n1ppp*$np121/($npppp); |
|
757
|
0
|
|
|
|
|
0
|
$m1122=$n1ppp*$np122/($npppp); |
|
758
|
0
|
|
|
|
|
0
|
$m1211=$n1ppp*$np211/($npppp); |
|
759
|
0
|
|
|
|
|
0
|
$m1212=$n1ppp*$np212/($npppp); |
|
760
|
0
|
|
|
|
|
0
|
$m1221=$n1ppp*$np221/($npppp); |
|
761
|
0
|
|
|
|
|
0
|
$m1222=$n1ppp*$np222/($npppp); |
|
762
|
0
|
|
|
|
|
0
|
$m2111=$n2ppp*$np111/($npppp); |
|
763
|
0
|
|
|
|
|
0
|
$m2112=$n2ppp*$np112/($npppp); |
|
764
|
0
|
|
|
|
|
0
|
$m2121=$n2ppp*$np121/($npppp); |
|
765
|
0
|
|
|
|
|
0
|
$m2122=$n2ppp*$np122/($npppp); |
|
766
|
0
|
|
|
|
|
0
|
$m2211=$n2ppp*$np211/($npppp); |
|
767
|
0
|
|
|
|
|
0
|
$m2212=$n2ppp*$np212/($npppp); |
|
768
|
0
|
|
|
|
|
0
|
$m2221=$n2ppp*$np221/($npppp); |
|
769
|
0
|
|
|
|
|
0
|
$m2222=$n2ppp*$np222/($npppp); |
|
770
|
|
|
|
|
|
|
} |
|
771
|
|
|
|
|
|
|
|
|
772
|
|
|
|
|
|
|
# calculate the expected values for : "01 2 3" check |
|
773
|
|
|
|
|
|
|
elsif($expected_values eq "01 2 3") { |
|
774
|
|
|
|
|
|
|
#print "01 2 3\n"; |
|
775
|
|
|
|
|
|
|
|
|
776
|
0
|
|
|
|
|
0
|
$n12pp = $n1211 + $n1212 + $n1221 + $n1222; |
|
777
|
0
|
|
|
|
|
0
|
$n21pp = $n2111 + $n2112 + $n2121 + $n2122; |
|
778
|
0
|
|
|
|
|
0
|
$n22pp = $n2211 + $n2212 + $n2221 + $n2222; |
|
779
|
|
|
|
|
|
|
|
|
780
|
0
|
|
|
|
|
0
|
$m1111=$n11pp*$npp1p*$nppp1/($npppp**2); |
|
781
|
0
|
|
|
|
|
0
|
$m1112=$n11pp*$npp1p*$nppp2/($npppp**2); |
|
782
|
0
|
|
|
|
|
0
|
$m1121=$n11pp*$npp2p*$nppp1/($npppp**2); |
|
783
|
0
|
|
|
|
|
0
|
$m1122=$n11pp*$npp2p*$nppp2/($npppp**2); |
|
784
|
0
|
|
|
|
|
0
|
$m1211=$n12pp*$npp1p*$nppp1/($npppp**2); |
|
785
|
0
|
|
|
|
|
0
|
$m1212=$n12pp*$npp1p*$nppp2/($npppp**2); |
|
786
|
0
|
|
|
|
|
0
|
$m1221=$n12pp*$npp2p*$nppp1/($npppp**2); |
|
787
|
0
|
|
|
|
|
0
|
$m1222=$n12pp*$npp2p*$nppp2/($npppp**2); |
|
788
|
0
|
|
|
|
|
0
|
$m2111=$n21pp*$npp1p*$nppp1/($npppp**2); |
|
789
|
0
|
|
|
|
|
0
|
$m2112=$n21pp*$npp1p*$nppp2/($npppp**2); |
|
790
|
0
|
|
|
|
|
0
|
$m2121=$n21pp*$npp2p*$nppp1/($npppp**2); |
|
791
|
0
|
|
|
|
|
0
|
$m2122=$n21pp*$npp2p*$nppp2/($npppp**2); |
|
792
|
0
|
|
|
|
|
0
|
$m2211=$n22pp*$npp1p*$nppp1/($npppp**2); |
|
793
|
0
|
|
|
|
|
0
|
$m2212=$n22pp*$npp1p*$nppp2/($npppp**2); |
|
794
|
0
|
|
|
|
|
0
|
$m2221=$n22pp*$npp2p*$nppp1/($npppp**2); |
|
795
|
0
|
|
|
|
|
0
|
$m2222=$n22pp*$npp2p*$nppp2/($npppp**2); |
|
796
|
|
|
|
|
|
|
|
|
797
|
|
|
|
|
|
|
} |
|
798
|
|
|
|
|
|
|
|
|
799
|
|
|
|
|
|
|
# calculate the expected values for : "0 1 23" check |
|
800
|
|
|
|
|
|
|
elsif($expected_values eq "0 1 23") { |
|
801
|
|
|
|
|
|
|
#print "0 1 23\n"; |
|
802
|
|
|
|
|
|
|
|
|
803
|
0
|
|
|
|
|
0
|
$npp12 = $n1112 + $n1212 + $n2112 + $n2212; |
|
804
|
0
|
|
|
|
|
0
|
$npp21 = $n1121 + $n1221 + $n2121 + $n2221; |
|
805
|
0
|
|
|
|
|
0
|
$npp22 = $n1122 + $n1222 + $n2122 + $n2222; |
|
806
|
|
|
|
|
|
|
|
|
807
|
0
|
|
|
|
|
0
|
$m1111=$n1ppp*$np1pp*$npp11/($npppp**2); |
|
808
|
0
|
|
|
|
|
0
|
$m1112=$n1ppp*$np1pp*$npp12/($npppp**2); |
|
809
|
0
|
|
|
|
|
0
|
$m1121=$n1ppp*$np1pp*$npp21/($npppp**2); |
|
810
|
0
|
|
|
|
|
0
|
$m1122=$n1ppp*$np1pp*$npp22/($npppp**2); |
|
811
|
0
|
|
|
|
|
0
|
$m1211=$n1ppp*$np2pp*$npp11/($npppp**2); |
|
812
|
0
|
|
|
|
|
0
|
$m1212=$n1ppp*$np2pp*$npp12/($npppp**2); |
|
813
|
0
|
|
|
|
|
0
|
$m1221=$n1ppp*$np2pp*$npp21/($npppp**2); |
|
814
|
0
|
|
|
|
|
0
|
$m1222=$n1ppp*$np2pp*$npp22/($npppp**2); |
|
815
|
0
|
|
|
|
|
0
|
$m2111=$n2ppp*$np1pp*$npp11/($npppp**2); |
|
816
|
0
|
|
|
|
|
0
|
$m2112=$n2ppp*$np1pp*$npp12/($npppp**2); |
|
817
|
0
|
|
|
|
|
0
|
$m2121=$n2ppp*$np1pp*$npp21/($npppp**2); |
|
818
|
0
|
|
|
|
|
0
|
$m2122=$n2ppp*$np1pp*$npp22/($npppp**2); |
|
819
|
0
|
|
|
|
|
0
|
$m2211=$n2ppp*$np2pp*$npp11/($npppp**2); |
|
820
|
0
|
|
|
|
|
0
|
$m2212=$n2ppp*$np2pp*$npp12/($npppp**2); |
|
821
|
0
|
|
|
|
|
0
|
$m2221=$n2ppp*$np2pp*$npp21/($npppp**2); |
|
822
|
0
|
|
|
|
|
0
|
$m2222=$n2ppp*$np2pp*$npp22/($npppp**2); |
|
823
|
|
|
|
|
|
|
} |
|
824
|
|
|
|
|
|
|
# calculate the expected values for : "0 12 3" check |
|
825
|
|
|
|
|
|
|
elsif($expected_values eq "0 12 3") { |
|
826
|
|
|
|
|
|
|
#print "0 12 3\n"; |
|
827
|
|
|
|
|
|
|
|
|
828
|
0
|
|
|
|
|
0
|
$np12p = $n1121 + $n1122 + $n2121 + $n2122; |
|
829
|
0
|
|
|
|
|
0
|
$np21p = $n1211 + $n1212 + $n2211 + $n2212; |
|
830
|
0
|
|
|
|
|
0
|
$np22p = $n1221 + $n1222 + $n2221 + $n2222; |
|
831
|
|
|
|
|
|
|
|
|
832
|
0
|
|
|
|
|
0
|
$m1111=$n1ppp*$np11p*$nppp1/($npppp**2); |
|
833
|
0
|
|
|
|
|
0
|
$m1112=$n1ppp*$np11p*$nppp2/($npppp**2); |
|
834
|
0
|
|
|
|
|
0
|
$m1121=$n1ppp*$np12p*$nppp1/($npppp**2); |
|
835
|
0
|
|
|
|
|
0
|
$m1122=$n1ppp*$np12p*$nppp2/($npppp**2); |
|
836
|
0
|
|
|
|
|
0
|
$m1211=$n1ppp*$np21p*$nppp1/($npppp**2); |
|
837
|
0
|
|
|
|
|
0
|
$m1212=$n1ppp*$np21p*$nppp2/($npppp**2); |
|
838
|
0
|
|
|
|
|
0
|
$m1221=$n1ppp*$np22p*$nppp1/($npppp**2); |
|
839
|
0
|
|
|
|
|
0
|
$m1222=$n1ppp*$np22p*$nppp2/($npppp**2); |
|
840
|
0
|
|
|
|
|
0
|
$m2111=$n2ppp*$np11p*$nppp1/($npppp**2); |
|
841
|
0
|
|
|
|
|
0
|
$m2112=$n2ppp*$np11p*$nppp2/($npppp**2); |
|
842
|
0
|
|
|
|
|
0
|
$m2121=$n2ppp*$np12p*$nppp1/($npppp**2); |
|
843
|
0
|
|
|
|
|
0
|
$m2122=$n2ppp*$np12p*$nppp2/($npppp**2); |
|
844
|
0
|
|
|
|
|
0
|
$m2211=$n2ppp*$np21p*$nppp1/($npppp**2); |
|
845
|
0
|
|
|
|
|
0
|
$m2212=$n2ppp*$np21p*$nppp2/($npppp**2); |
|
846
|
0
|
|
|
|
|
0
|
$m2221=$n2ppp*$np22p*$nppp1/($npppp**2); |
|
847
|
0
|
|
|
|
|
0
|
$m2222=$n2ppp*$np22p*$nppp2/($npppp**2); |
|
848
|
|
|
|
|
|
|
} |
|
849
|
|
|
|
|
|
|
|
|
850
|
|
|
|
|
|
|
# calculate the expected values for : "012 3" check |
|
851
|
|
|
|
|
|
|
elsif($expected_values eq "012 3") { |
|
852
|
|
|
|
|
|
|
#print "012 3\n"; |
|
853
|
|
|
|
|
|
|
|
|
854
|
0
|
|
|
|
|
0
|
$n112p = $n1121 + $n1122; |
|
855
|
0
|
|
|
|
|
0
|
$n121p = $n1211 + $n1212; |
|
856
|
0
|
|
|
|
|
0
|
$n122p = $n1221 + $n1222; |
|
857
|
0
|
|
|
|
|
0
|
$n211p = $n2111 + $n2112; |
|
858
|
0
|
|
|
|
|
0
|
$n212p = $n2121 + $n2122; |
|
859
|
0
|
|
|
|
|
0
|
$n221p = $n2211 + $n2212; |
|
860
|
0
|
|
|
|
|
0
|
$n222p = $n2221 + $n2222; |
|
861
|
|
|
|
|
|
|
|
|
862
|
0
|
|
|
|
|
0
|
$m1111=$n111p*$nppp1/($npppp); |
|
863
|
0
|
|
|
|
|
0
|
$m1112=$n111p*$nppp2/($npppp); |
|
864
|
0
|
|
|
|
|
0
|
$m1121=$n112p*$nppp1/($npppp); |
|
865
|
0
|
|
|
|
|
0
|
$m1122=$n112p*$nppp2/($npppp); |
|
866
|
0
|
|
|
|
|
0
|
$m1211=$n121p*$nppp1/($npppp); |
|
867
|
0
|
|
|
|
|
0
|
$m1212=$n121p*$nppp2/($npppp); |
|
868
|
0
|
|
|
|
|
0
|
$m1221=$n122p*$nppp1/($npppp); |
|
869
|
0
|
|
|
|
|
0
|
$m1222=$n122p*$nppp2/($npppp); |
|
870
|
0
|
|
|
|
|
0
|
$m2111=$n211p*$nppp1/($npppp); |
|
871
|
0
|
|
|
|
|
0
|
$m2112=$n211p*$nppp2/($npppp); |
|
872
|
0
|
|
|
|
|
0
|
$m2121=$n212p*$nppp1/($npppp); |
|
873
|
0
|
|
|
|
|
0
|
$m2122=$n212p*$nppp2/($npppp); |
|
874
|
0
|
|
|
|
|
0
|
$m2211=$n221p*$nppp1/($npppp); |
|
875
|
0
|
|
|
|
|
0
|
$m2212=$n221p*$nppp2/($npppp); |
|
876
|
0
|
|
|
|
|
0
|
$m2221=$n222p*$nppp1/($npppp); |
|
877
|
0
|
|
|
|
|
0
|
$m2222=$n222p*$nppp2/($npppp); |
|
878
|
|
|
|
|
|
|
} |
|
879
|
|
|
|
|
|
|
|
|
880
|
|
|
|
|
|
|
# calculate the expected values for : "0 13 2" check |
|
881
|
|
|
|
|
|
|
elsif($expected_values eq "0 13 2") { |
|
882
|
|
|
|
|
|
|
#print "0 13 2\n"; |
|
883
|
|
|
|
|
|
|
|
|
884
|
0
|
|
|
|
|
0
|
$np1p2 = $n1112 + $n1122 + $n2112 + $n2122; |
|
885
|
0
|
|
|
|
|
0
|
$np2p1 = $n1211 + $n1221 + $n2211 + $n2221; |
|
886
|
0
|
|
|
|
|
0
|
$np2p2 = $n1212 + $n1222 + $n2212 + $n2222; |
|
887
|
|
|
|
|
|
|
|
|
888
|
0
|
|
|
|
|
0
|
$m1111=$n1ppp*$np1p1*$npp1p/($npppp**2); |
|
889
|
0
|
|
|
|
|
0
|
$m1112=$n1ppp*$np1p2*$npp1p/($npppp**2); |
|
890
|
0
|
|
|
|
|
0
|
$m1121=$n1ppp*$np1p1*$npp2p/($npppp**2); |
|
891
|
0
|
|
|
|
|
0
|
$m1122=$n1ppp*$np1p2*$npp2p/($npppp**2); |
|
892
|
0
|
|
|
|
|
0
|
$m1211=$n1ppp*$np2p1*$npp1p/($npppp**2); |
|
893
|
0
|
|
|
|
|
0
|
$m1212=$n1ppp*$np2p2*$npp1p/($npppp**2); |
|
894
|
0
|
|
|
|
|
0
|
$m1221=$n1ppp*$np2p1*$npp2p/($npppp**2); |
|
895
|
0
|
|
|
|
|
0
|
$m1222=$n1ppp*$np2p2*$npp2p/($npppp**2); |
|
896
|
0
|
|
|
|
|
0
|
$m2111=$n2ppp*$np1p1*$npp1p/($npppp**2); |
|
897
|
0
|
|
|
|
|
0
|
$m2112=$n2ppp*$np1p2*$npp1p/($npppp**2); |
|
898
|
0
|
|
|
|
|
0
|
$m2121=$n2ppp*$np1p1*$npp2p/($npppp**2); |
|
899
|
0
|
|
|
|
|
0
|
$m2122=$n2ppp*$np1p2*$npp2p/($npppp**2); |
|
900
|
0
|
|
|
|
|
0
|
$m2211=$n2ppp*$np2p1*$npp1p/($npppp**2); |
|
901
|
0
|
|
|
|
|
0
|
$m2212=$n2ppp*$np2p2*$npp1p/($npppp**2); |
|
902
|
0
|
|
|
|
|
0
|
$m2221=$n2ppp*$np2p1*$npp2p/($npppp**2); |
|
903
|
0
|
|
|
|
|
0
|
$m2222=$n2ppp*$np2p2*$npp2p/($npppp**2); |
|
904
|
|
|
|
|
|
|
|
|
905
|
|
|
|
|
|
|
} |
|
906
|
|
|
|
|
|
|
|
|
907
|
|
|
|
|
|
|
# calculate the expected values for : "02 13" |
|
908
|
|
|
|
|
|
|
elsif($expected_values eq "02 13") { |
|
909
|
|
|
|
|
|
|
#print "02 13\n"; |
|
910
|
|
|
|
|
|
|
|
|
911
|
0
|
|
|
|
|
0
|
$n1p2p = $n1121 + $n1122 + $n1221 + $n1222; |
|
912
|
0
|
|
|
|
|
0
|
$n2p1p = $n2111 + $n2112 + $n2211 + $n2212; |
|
913
|
0
|
|
|
|
|
0
|
$n2p2p = $n2121 + $n2122 + $n2221 + $n2222; |
|
914
|
|
|
|
|
|
|
|
|
915
|
0
|
|
|
|
|
0
|
$np1p2 = $n1112 + $n1122 + $n2112 + $n2122; |
|
916
|
0
|
|
|
|
|
0
|
$np2p1 = $n1211 + $n1221 + $n2211 + $n2221; |
|
917
|
0
|
|
|
|
|
0
|
$np2p2 = $n1212 + $n1222 + $n2212 + $n2222; |
|
918
|
|
|
|
|
|
|
|
|
919
|
|
|
|
|
|
|
|
|
920
|
0
|
|
|
|
|
0
|
$m1111=$n1p1p*$np1p1/($npppp); |
|
921
|
0
|
|
|
|
|
0
|
$m1112=$n1p1p*$np1p2/($npppp); |
|
922
|
0
|
|
|
|
|
0
|
$m1121=$n1p2p*$np1p1/($npppp); |
|
923
|
0
|
|
|
|
|
0
|
$m1122=$n1p2p*$np1p2/($npppp); |
|
924
|
0
|
|
|
|
|
0
|
$m1211=$n1p1p*$np2p1/($npppp); |
|
925
|
0
|
|
|
|
|
0
|
$m1212=$n1p1p*$np2p2/($npppp); |
|
926
|
0
|
|
|
|
|
0
|
$m1221=$n1p2p*$np2p1/($npppp); |
|
927
|
0
|
|
|
|
|
0
|
$m1222=$n1p2p*$np2p2/($npppp); |
|
928
|
0
|
|
|
|
|
0
|
$m2111=$n2p1p*$np1p1/($npppp); |
|
929
|
0
|
|
|
|
|
0
|
$m2112=$n2p1p*$np1p2/($npppp); |
|
930
|
0
|
|
|
|
|
0
|
$m2121=$n2p2p*$np1p1/($npppp); |
|
931
|
0
|
|
|
|
|
0
|
$m2122=$n2p2p*$np1p2/($npppp); |
|
932
|
0
|
|
|
|
|
0
|
$m2211=$n2p1p*$np2p1/($npppp); |
|
933
|
0
|
|
|
|
|
0
|
$m2212=$n2p1p*$np2p2/($npppp); |
|
934
|
0
|
|
|
|
|
0
|
$m2221=$n2p2p*$np2p1/($npppp); |
|
935
|
0
|
|
|
|
|
0
|
$m2222=$n2p2p*$np2p2/($npppp); |
|
936
|
|
|
|
|
|
|
|
|
937
|
|
|
|
|
|
|
} |
|
938
|
|
|
|
|
|
|
|
|
939
|
|
|
|
|
|
|
# calculate the expected values for : "03 12" check |
|
940
|
|
|
|
|
|
|
elsif($expected_values eq "03 12") { |
|
941
|
|
|
|
|
|
|
#print "03 12\n"; |
|
942
|
|
|
|
|
|
|
|
|
943
|
0
|
|
|
|
|
0
|
$n1pp2 = $n1112 + $n1122 + $n1212 + $n1222; |
|
944
|
0
|
|
|
|
|
0
|
$n2pp1 = $n2111 + $n2121 + $n2211 + $n2221; |
|
945
|
0
|
|
|
|
|
0
|
$n2pp2 = $n2112 + $n2122 + $n2212 + $n2222; |
|
946
|
|
|
|
|
|
|
|
|
947
|
0
|
|
|
|
|
0
|
$np12p = $n1121 + $n1122 + $n2121 + $n2122; |
|
948
|
0
|
|
|
|
|
0
|
$np21p = $n1211 + $n1212 + $n2211 + $n2212; |
|
949
|
0
|
|
|
|
|
0
|
$np22p = $n1221 + $n1222 + $n2221 + $n2222; |
|
950
|
|
|
|
|
|
|
|
|
951
|
0
|
|
|
|
|
0
|
$m1111=$n1pp1*$np11p/($npppp); |
|
952
|
0
|
|
|
|
|
0
|
$m1112=$n1pp2*$np11p/($npppp); |
|
953
|
0
|
|
|
|
|
0
|
$m1121=$n1pp1*$np12p/($npppp); |
|
954
|
0
|
|
|
|
|
0
|
$m1122=$n1pp2*$np12p/($npppp); |
|
955
|
0
|
|
|
|
|
0
|
$m1211=$n1pp1*$np21p/($npppp); |
|
956
|
0
|
|
|
|
|
0
|
$m1212=$n1pp2*$np21p/($npppp); |
|
957
|
0
|
|
|
|
|
0
|
$m1221=$n1pp1*$np22p/($npppp); |
|
958
|
0
|
|
|
|
|
0
|
$m1222=$n1pp2*$np22p/($npppp); |
|
959
|
0
|
|
|
|
|
0
|
$m2111=$n2pp1*$np11p/($npppp); |
|
960
|
0
|
|
|
|
|
0
|
$m2112=$n2pp2*$np11p/($npppp); |
|
961
|
0
|
|
|
|
|
0
|
$m2121=$n2pp1*$np12p/($npppp); |
|
962
|
0
|
|
|
|
|
0
|
$m2122=$n2pp2*$np12p/($npppp); |
|
963
|
0
|
|
|
|
|
0
|
$m2211=$n2pp1*$np21p/($npppp); |
|
964
|
0
|
|
|
|
|
0
|
$m2212=$n2pp2*$np21p/($npppp); |
|
965
|
0
|
|
|
|
|
0
|
$m2221=$n2pp1*$np22p/($npppp); |
|
966
|
0
|
|
|
|
|
0
|
$m2222=$n2pp2*$np22p/($npppp); |
|
967
|
|
|
|
|
|
|
} |
|
968
|
|
|
|
|
|
|
|
|
969
|
|
|
|
|
|
|
# calculate the expected values for : "023 1" check |
|
970
|
|
|
|
|
|
|
elsif($expected_values eq "023 1") { |
|
971
|
|
|
|
|
|
|
#print "023 1\n"; |
|
972
|
|
|
|
|
|
|
|
|
973
|
0
|
|
|
|
|
0
|
$n1p12 = $n1112 + $n1212; |
|
974
|
0
|
|
|
|
|
0
|
$n1p21 = $n1121 + $n1221; |
|
975
|
0
|
|
|
|
|
0
|
$n1p22 = $n1122 + $n1222; |
|
976
|
0
|
|
|
|
|
0
|
$n2p11 = $n2111 + $n2211; |
|
977
|
0
|
|
|
|
|
0
|
$n2p12 = $n2112 + $n2212; |
|
978
|
0
|
|
|
|
|
0
|
$n2p21 = $n2121 + $n2221; |
|
979
|
0
|
|
|
|
|
0
|
$n2p22 = $n2122 + $n2222; |
|
980
|
|
|
|
|
|
|
|
|
981
|
0
|
|
|
|
|
0
|
$m1111=$n1p11*$np1pp/($npppp); |
|
982
|
0
|
|
|
|
|
0
|
$m1112=$n1p12*$np1pp/($npppp); |
|
983
|
0
|
|
|
|
|
0
|
$m1121=$n1p21*$np1pp/($npppp); |
|
984
|
0
|
|
|
|
|
0
|
$m1122=$n1p22*$np1pp/($npppp); |
|
985
|
0
|
|
|
|
|
0
|
$m1211=$n1p11*$np2pp/($npppp); |
|
986
|
0
|
|
|
|
|
0
|
$m1212=$n1p12*$np2pp/($npppp); |
|
987
|
0
|
|
|
|
|
0
|
$m1221=$n1p21*$np2pp/($npppp); |
|
988
|
0
|
|
|
|
|
0
|
$m1222=$n1p22*$np2pp/($npppp); |
|
989
|
0
|
|
|
|
|
0
|
$m2111=$n2p11*$np1pp/($npppp); |
|
990
|
0
|
|
|
|
|
0
|
$m2112=$n2p12*$np1pp/($npppp); |
|
991
|
0
|
|
|
|
|
0
|
$m2121=$n2p21*$np1pp/($npppp); |
|
992
|
0
|
|
|
|
|
0
|
$m2122=$n2p22*$np1pp/($npppp); |
|
993
|
0
|
|
|
|
|
0
|
$m2211=$n2p11*$np2pp/($npppp); |
|
994
|
0
|
|
|
|
|
0
|
$m2212=$n2p12*$np2pp/($npppp); |
|
995
|
0
|
|
|
|
|
0
|
$m2221=$n2p21*$np2pp/($npppp); |
|
996
|
0
|
|
|
|
|
0
|
$m2222=$n2p22*$np2pp/($npppp); |
|
997
|
|
|
|
|
|
|
} |
|
998
|
|
|
|
|
|
|
|
|
999
|
|
|
|
|
|
|
# calculate the expected values for : "013 2" check |
|
1000
|
|
|
|
|
|
|
elsif($expected_values eq "013 2") { |
|
1001
|
|
|
|
|
|
|
#print "013 2\n"; |
|
1002
|
|
|
|
|
|
|
|
|
1003
|
0
|
|
|
|
|
0
|
$n11p2 = $n1112 + $n1122; |
|
1004
|
0
|
|
|
|
|
0
|
$n12p1 = $n1211 + $n1221; |
|
1005
|
0
|
|
|
|
|
0
|
$n12p2 = $n1212 + $n1222; |
|
1006
|
0
|
|
|
|
|
0
|
$n21p1 = $n2111 + $n2121; |
|
1007
|
0
|
|
|
|
|
0
|
$n21p2 = $n2112 + $n2122; |
|
1008
|
0
|
|
|
|
|
0
|
$n22p1 = $n2211 + $n2221; |
|
1009
|
0
|
|
|
|
|
0
|
$n22p2 = $n2212 + $n2222; |
|
1010
|
|
|
|
|
|
|
|
|
1011
|
0
|
|
|
|
|
0
|
$m1111=$n11p1*$npp1p/($npppp); |
|
1012
|
0
|
|
|
|
|
0
|
$m1112=$n11p2*$npp1p/($npppp); |
|
1013
|
0
|
|
|
|
|
0
|
$m1121=$n11p1*$npp2p/($npppp); |
|
1014
|
0
|
|
|
|
|
0
|
$m1122=$n11p2*$npp2p/($npppp); |
|
1015
|
0
|
|
|
|
|
0
|
$m1211=$n12p1*$npp1p/($npppp); |
|
1016
|
0
|
|
|
|
|
0
|
$m1212=$n12p2*$npp1p/($npppp); |
|
1017
|
0
|
|
|
|
|
0
|
$m1221=$n12p1*$npp2p/($npppp); |
|
1018
|
0
|
|
|
|
|
0
|
$m1222=$n12p2*$npp2p/($npppp); |
|
1019
|
0
|
|
|
|
|
0
|
$m2111=$n21p1*$npp1p/($npppp); |
|
1020
|
0
|
|
|
|
|
0
|
$m2112=$n21p2*$npp1p/($npppp); |
|
1021
|
0
|
|
|
|
|
0
|
$m2121=$n21p1*$npp2p/($npppp); |
|
1022
|
0
|
|
|
|
|
0
|
$m2122=$n21p2*$npp2p/($npppp); |
|
1023
|
0
|
|
|
|
|
0
|
$m2211=$n22p1*$npp1p/($npppp); |
|
1024
|
0
|
|
|
|
|
0
|
$m2212=$n22p2*$npp1p/($npppp); |
|
1025
|
0
|
|
|
|
|
0
|
$m2221=$n22p1*$npp2p/($npppp); |
|
1026
|
0
|
|
|
|
|
0
|
$m2222=$n22p2*$npp2p/($npppp); |
|
1027
|
|
|
|
|
|
|
} |
|
1028
|
|
|
|
|
|
|
|
|
1029
|
|
|
|
|
|
|
# calculate the expected values for : "01 23" check |
|
1030
|
|
|
|
|
|
|
elsif($expected_values eq "01 23") { |
|
1031
|
|
|
|
|
|
|
#print "01 23\n"; |
|
1032
|
|
|
|
|
|
|
|
|
1033
|
0
|
|
|
|
|
0
|
$n12pp = $n1211+ $n1212 + $n1221 + $n1222; |
|
1034
|
0
|
|
|
|
|
0
|
$n21pp = $n2111+ $n2112 + $n2121 + $n2122; |
|
1035
|
0
|
|
|
|
|
0
|
$n22pp = $n2211+ $n2212 + $n2221 + $n2222; |
|
1036
|
|
|
|
|
|
|
|
|
1037
|
0
|
|
|
|
|
0
|
$npp12 = $n1112 + $n1212 + $n2112 + $n2212; |
|
1038
|
0
|
|
|
|
|
0
|
$npp21 = $n1121 + $n1221 + $n2121 + $n2221; |
|
1039
|
0
|
|
|
|
|
0
|
$npp22 = $n1122 + $n1222 + $n2122 + $n2222; |
|
1040
|
|
|
|
|
|
|
|
|
1041
|
|
|
|
|
|
|
|
|
1042
|
0
|
|
|
|
|
0
|
$m1111=$n11pp*$npp11/($npppp); |
|
1043
|
0
|
|
|
|
|
0
|
$m1112=$n11pp*$npp12/($npppp); |
|
1044
|
0
|
|
|
|
|
0
|
$m1121=$n11pp*$npp21/($npppp); |
|
1045
|
0
|
|
|
|
|
0
|
$m1122=$n11pp*$npp22/($npppp); |
|
1046
|
0
|
|
|
|
|
0
|
$m1211=$n12pp*$npp11/($npppp); |
|
1047
|
0
|
|
|
|
|
0
|
$m1212=$n12pp*$npp12/($npppp); |
|
1048
|
0
|
|
|
|
|
0
|
$m1221=$n12pp*$npp21/($npppp); |
|
1049
|
0
|
|
|
|
|
0
|
$m1222=$n12pp*$npp22/($npppp); |
|
1050
|
0
|
|
|
|
|
0
|
$m2111=$n21pp*$npp11/($npppp); |
|
1051
|
0
|
|
|
|
|
0
|
$m2112=$n21pp*$npp12/($npppp); |
|
1052
|
0
|
|
|
|
|
0
|
$m2121=$n21pp*$npp21/($npppp); |
|
1053
|
0
|
|
|
|
|
0
|
$m2122=$n21pp*$npp22/($npppp); |
|
1054
|
0
|
|
|
|
|
0
|
$m2211=$n22pp*$npp11/($npppp); |
|
1055
|
0
|
|
|
|
|
0
|
$m2212=$n22pp*$npp12/($npppp); |
|
1056
|
0
|
|
|
|
|
0
|
$m2221=$n22pp*$npp21/($npppp); |
|
1057
|
0
|
|
|
|
|
0
|
$m2222=$n22pp*$npp22/($npppp); |
|
1058
|
|
|
|
|
|
|
} |
|
1059
|
|
|
|
|
|
|
|
|
1060
|
|
|
|
|
|
|
# calculate the expected values for : "03 1 2" check |
|
1061
|
|
|
|
|
|
|
elsif($expected_values eq "03 1 2") { |
|
1062
|
|
|
|
|
|
|
#print "03 1 2\n"; |
|
1063
|
|
|
|
|
|
|
|
|
1064
|
0
|
|
|
|
|
0
|
$n1pp2 = $n1112 + $n1122 + $n1212 + $n1222; |
|
1065
|
0
|
|
|
|
|
0
|
$n2pp1 = $n2111 + $n2121 + $n2211 + $n2221; |
|
1066
|
0
|
|
|
|
|
0
|
$n2pp2 = $n2112 + $n2122 + $n2212 + $n2222; |
|
1067
|
|
|
|
|
|
|
|
|
1068
|
|
|
|
|
|
|
|
|
1069
|
0
|
|
|
|
|
0
|
$m1111=$n1pp1*$np1pp*$npp1p/($npppp**2); |
|
1070
|
0
|
|
|
|
|
0
|
$m1112=$n1pp2*$np1pp*$npp1p/($npppp**2); |
|
1071
|
0
|
|
|
|
|
0
|
$m1121=$n1pp1*$np1pp*$npp2p/($npppp**2); |
|
1072
|
0
|
|
|
|
|
0
|
$m1122=$n1pp2*$np1pp*$npp2p/($npppp**2); |
|
1073
|
0
|
|
|
|
|
0
|
$m1211=$n1pp1*$np2pp*$npp1p/($npppp**2); |
|
1074
|
0
|
|
|
|
|
0
|
$m1212=$n1pp2*$np2pp*$npp1p/($npppp**2); |
|
1075
|
0
|
|
|
|
|
0
|
$m1221=$n1pp1*$np2pp*$npp2p/($npppp**2); |
|
1076
|
0
|
|
|
|
|
0
|
$m1222=$n1pp2*$np2pp*$npp2p/($npppp**2); |
|
1077
|
0
|
|
|
|
|
0
|
$m2111=$n2pp1*$np1pp*$npp1p/($npppp**2); |
|
1078
|
0
|
|
|
|
|
0
|
$m2112=$n2pp2*$np1pp*$npp1p/($npppp**2); |
|
1079
|
0
|
|
|
|
|
0
|
$m2121=$n2pp1*$np1pp*$npp2p/($npppp**2); |
|
1080
|
0
|
|
|
|
|
0
|
$m2122=$n2pp2*$np1pp*$npp2p/($npppp**2); |
|
1081
|
0
|
|
|
|
|
0
|
$m2211=$n2pp1*$np2pp*$npp1p/($npppp**2); |
|
1082
|
0
|
|
|
|
|
0
|
$m2212=$n2pp2*$np2pp*$npp1p/($npppp**2); |
|
1083
|
0
|
|
|
|
|
0
|
$m2221=$n2pp1*$np2pp*$npp2p/($npppp**2); |
|
1084
|
0
|
|
|
|
|
0
|
$m2222=$n2pp2*$np2pp*$npp2p/($npppp**2); |
|
1085
|
|
|
|
|
|
|
} |
|
1086
|
|
|
|
|
|
|
|
|
1087
|
|
|
|
|
|
|
# calculate the expected values for : "02 1 3" check |
|
1088
|
|
|
|
|
|
|
elsif($expected_values eq "02 1 3") { |
|
1089
|
|
|
|
|
|
|
#print "02 1 3\n"; |
|
1090
|
|
|
|
|
|
|
|
|
1091
|
0
|
|
|
|
|
0
|
$n1p2p = $n1121 + $n1122 + $n1221 + $n1222; |
|
1092
|
0
|
|
|
|
|
0
|
$n2p1p = $n2111 + $n2112 + $n2211 + $n2212; |
|
1093
|
0
|
|
|
|
|
0
|
$n2p2p = $n2121 + $n2122 + $n2221 + $n2222; |
|
1094
|
|
|
|
|
|
|
|
|
1095
|
|
|
|
|
|
|
|
|
1096
|
0
|
|
|
|
|
0
|
$m1111=$n1p1p*$np1pp*$nppp1/($npppp**2); |
|
1097
|
0
|
|
|
|
|
0
|
$m1112=$n1p1p*$np1pp*$nppp2/($npppp**2); |
|
1098
|
0
|
|
|
|
|
0
|
$m1121=$n1p2p*$np1pp*$nppp1/($npppp**2); |
|
1099
|
0
|
|
|
|
|
0
|
$m1122=$n1p2p*$np1pp*$nppp2/($npppp**2); |
|
1100
|
0
|
|
|
|
|
0
|
$m1211=$n1p1p*$np2pp*$nppp1/($npppp**2); |
|
1101
|
0
|
|
|
|
|
0
|
$m1212=$n1p1p*$np2pp*$nppp2/($npppp**2); |
|
1102
|
0
|
|
|
|
|
0
|
$m1221=$n1p2p*$np2pp*$nppp1/($npppp**2); |
|
1103
|
0
|
|
|
|
|
0
|
$m1222=$n1p2p*$np2pp*$nppp2/($npppp**2); |
|
1104
|
0
|
|
|
|
|
0
|
$m2111=$n2p1p*$np1pp*$nppp1/($npppp**2); |
|
1105
|
0
|
|
|
|
|
0
|
$m2112=$n2p1p*$np1pp*$nppp2/($npppp**2); |
|
1106
|
0
|
|
|
|
|
0
|
$m2121=$n2p2p*$np1pp*$nppp1/($npppp**2); |
|
1107
|
0
|
|
|
|
|
0
|
$m2122=$n2p2p*$np1pp*$nppp2/($npppp**2); |
|
1108
|
0
|
|
|
|
|
0
|
$m2211=$n2p1p*$np2pp*$nppp1/($npppp**2); |
|
1109
|
0
|
|
|
|
|
0
|
$m2212=$n2p1p*$np2pp*$nppp2/($npppp**2); |
|
1110
|
0
|
|
|
|
|
0
|
$m2221=$n2p2p*$np2pp*$nppp1/($npppp**2); |
|
1111
|
0
|
|
|
|
|
0
|
$m2222=$n2p2p*$np2pp*$nppp2/($npppp**2); |
|
1112
|
|
|
|
|
|
|
} |
|
1113
|
|
|
|
|
|
|
|
|
1114
|
|
|
|
|
|
|
else { |
|
1115
|
|
|
|
|
|
|
|
|
1116
|
|
|
|
|
|
|
#print "0 1 2 3\n"; |
|
1117
|
|
|
|
|
|
|
|
|
1118
|
1
|
|
|
|
|
6
|
$m1111=$n1ppp*$np1pp*$npp1p*$nppp1/($npppp**3); |
|
1119
|
1
|
|
|
|
|
4
|
$m1112=$n1ppp*$np1pp*$npp1p*$nppp2/($npppp**3); |
|
1120
|
1
|
|
|
|
|
4
|
$m1121=$n1ppp*$np1pp*$npp2p*$nppp1/($npppp**3); |
|
1121
|
1
|
|
|
|
|
8
|
$m1122=$n1ppp*$np1pp*$npp2p*$nppp2/($npppp**3); |
|
1122
|
1
|
|
|
|
|
4
|
$m1211=$n1ppp*$np2pp*$npp1p*$nppp1/($npppp**3); |
|
1123
|
1
|
|
|
|
|
3
|
$m1212=$n1ppp*$np2pp*$npp1p*$nppp2/($npppp**3); |
|
1124
|
1
|
|
|
|
|
3
|
$m1221=$n1ppp*$np2pp*$npp2p*$nppp1/($npppp**3); |
|
1125
|
1
|
|
|
|
|
4
|
$m1222=$n1ppp*$np2pp*$npp2p*$nppp2/($npppp**3); |
|
1126
|
1
|
|
|
|
|
3
|
$m2111=$n2ppp*$np1pp*$npp1p*$nppp1/($npppp**3); |
|
1127
|
1
|
|
|
|
|
3
|
$m2112=$n2ppp*$np1pp*$npp1p*$nppp2/($npppp**3); |
|
1128
|
1
|
|
|
|
|
3
|
$m2121=$n2ppp*$np1pp*$npp2p*$nppp1/($npppp**3); |
|
1129
|
1
|
|
|
|
|
4
|
$m2122=$n2ppp*$np1pp*$npp2p*$nppp2/($npppp**3); |
|
1130
|
1
|
|
|
|
|
6
|
$m2211=$n2ppp*$np2pp*$npp1p*$nppp1/($npppp**3); |
|
1131
|
1
|
|
|
|
|
4
|
$m2212=$n2ppp*$np2pp*$npp1p*$nppp2/($npppp**3); |
|
1132
|
1
|
|
|
|
|
4
|
$m2221=$n2ppp*$np2pp*$npp2p*$nppp1/($npppp**3); |
|
1133
|
1
|
|
|
|
|
4
|
$m2222=$n2ppp*$np2pp*$npp2p*$nppp2/($npppp**3); |
|
1134
|
|
|
|
|
|
|
} |
|
1135
|
|
|
|
|
|
|
|
|
1136
|
1
|
|
|
|
|
4
|
return 1; |
|
1137
|
|
|
|
|
|
|
} |
|
1138
|
|
|
|
|
|
|
|
|
1139
|
|
|
|
|
|
|
|
|
1140
|
|
|
|
|
|
|
=item computeMarginalTotals($marginal_values) - This method |
|
1141
|
|
|
|
|
|
|
computes the marginal totals from the valuescomputed by the count.pl |
|
1142
|
|
|
|
|
|
|
program and are passed to the calculateStatistic() method. |
|
1143
|
|
|
|
|
|
|
|
|
1144
|
|
|
|
|
|
|
INPUT PARAMS : $count_values .. Reference to an hash consisting |
|
1145
|
|
|
|
|
|
|
of the frequency combination |
|
1146
|
|
|
|
|
|
|
output. |
|
1147
|
|
|
|
|
|
|
|
|
1148
|
|
|
|
|
|
|
RETURN VALUES : 1/undef ..returns '1' to indicate success |
|
1149
|
|
|
|
|
|
|
and an undefined(NULL) value to indicate |
|
1150
|
|
|
|
|
|
|
failure. |
|
1151
|
|
|
|
|
|
|
|
|
1152
|
|
|
|
|
|
|
=cut |
|
1153
|
|
|
|
|
|
|
|
|
1154
|
|
|
|
|
|
|
sub computeMarginalTotals |
|
1155
|
|
|
|
|
|
|
{ |
|
1156
|
|
|
|
|
|
|
|
|
1157
|
1
|
|
|
1
|
1
|
4
|
my ($values)=@_; |
|
1158
|
|
|
|
|
|
|
|
|
1159
|
|
|
|
|
|
|
# marginal values |
|
1160
|
1
|
|
|
|
|
3
|
$np112 = $n1112 + $n2112; |
|
1161
|
1
|
|
|
|
|
2
|
$np121 = $n1121 + $n2121; |
|
1162
|
1
|
|
|
|
|
3
|
$np122 = $n1122 + $n2122; |
|
1163
|
1
|
|
|
|
|
3
|
$np211 = $n1211 + $n2211; |
|
1164
|
1
|
|
|
|
|
2
|
$np212 = $n1212 + $n2212; |
|
1165
|
1
|
|
|
|
|
3
|
$np221 = $n1221 + $n2221; |
|
1166
|
1
|
|
|
|
|
2
|
$np222 = $n1222 + $n2222; |
|
1167
|
1
|
|
|
|
|
2
|
$n2ppp=$npppp-$n1ppp; |
|
1168
|
1
|
|
|
|
|
3
|
$np2pp=$npppp-$np1pp; |
|
1169
|
1
|
|
|
|
|
2
|
$npp2p=$npppp-$npp1p; |
|
1170
|
1
|
|
|
|
|
2
|
$nppp2=$npppp-$nppp1; |
|
1171
|
|
|
|
|
|
|
|
|
1172
|
|
|
|
|
|
|
# n1ppp should be greater than or equal to zero |
|
1173
|
1
|
50
|
|
|
|
5
|
if ($n1ppp <= 0) { |
|
1174
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($n1ppp) must not be negative."; |
|
1175
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 203; return; |
|
|
0
|
|
|
|
|
0
|
|
|
1176
|
|
|
|
|
|
|
} |
|
1177
|
|
|
|
|
|
|
|
|
1178
|
|
|
|
|
|
|
# n1ppp should be less than or equal to total4grams |
|
1179
|
1
|
50
|
|
|
|
4
|
if ($n1ppp > $npppp) { |
|
1180
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($n1ppp) must not exceed total number of 4grams ($npppp)."; |
|
1181
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 204; return; |
|
|
0
|
|
|
|
|
0
|
|
|
1182
|
|
|
|
|
|
|
} |
|
1183
|
|
|
|
|
|
|
|
|
1184
|
|
|
|
|
|
|
# np1pp should be greater than or equal to zero |
|
1185
|
1
|
50
|
|
|
|
4
|
if ($np1pp <= 0) { |
|
1186
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($np1pp) must not be negative."; |
|
1187
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 205; return; |
|
|
0
|
|
|
|
|
0
|
|
|
1188
|
|
|
|
|
|
|
} |
|
1189
|
|
|
|
|
|
|
|
|
1190
|
|
|
|
|
|
|
# np1pp should be less than or equal to total4grams |
|
1191
|
1
|
50
|
|
|
|
4
|
if ($np1pp > $npppp) { |
|
1192
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($np1pp) must not exceed total number of 4grams."; |
|
1193
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 206; return; |
|
|
0
|
|
|
|
|
0
|
|
|
1194
|
|
|
|
|
|
|
} |
|
1195
|
|
|
|
|
|
|
|
|
1196
|
|
|
|
|
|
|
# npp1p should be greater than or equal to zero |
|
1197
|
1
|
50
|
|
|
|
4
|
if ($npp1p <= 0) { |
|
1198
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($npp1p) must not be negative."; |
|
1199
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 207; return; |
|
|
0
|
|
|
|
|
0
|
|
|
1200
|
|
|
|
|
|
|
} |
|
1201
|
|
|
|
|
|
|
|
|
1202
|
|
|
|
|
|
|
# npp1p should be less than or equal to total4grams |
|
1203
|
1
|
50
|
|
|
|
4
|
if ($npp1p > $npppp) { |
|
1204
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($npp1p) must not exceed total number of 4grams."; |
|
1205
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 208; return; |
|
|
0
|
|
|
|
|
0
|
|
|
1206
|
|
|
|
|
|
|
} |
|
1207
|
|
|
|
|
|
|
|
|
1208
|
|
|
|
|
|
|
# nppp1p should be greater than or equal to zero |
|
1209
|
1
|
50
|
|
|
|
4
|
if ($nppp1 <= 0) { |
|
1210
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($nppp1) must not be negative."; |
|
1211
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 209; return; |
|
|
0
|
|
|
|
|
0
|
|
|
1212
|
|
|
|
|
|
|
} |
|
1213
|
|
|
|
|
|
|
|
|
1214
|
|
|
|
|
|
|
# nppp1p should be less than or equal to total4grams |
|
1215
|
1
|
50
|
|
|
|
3
|
if ($nppp1 > $npppp) { |
|
1216
|
0
|
|
|
|
|
0
|
$errorMessage = "Marginal total value ($nppp1) must not exceed total number of 4grams."; |
|
1217
|
0
|
|
|
|
|
0
|
$errorCodeNumber = 210; return; |
|
|
0
|
|
|
|
|
0
|
|
|
1218
|
|
|
|
|
|
|
} |
|
1219
|
|
|
|
|
|
|
|
|
1220
|
1
|
|
|
|
|
5
|
return 1; |
|
1221
|
|
|
|
|
|
|
} |
|
1222
|
|
|
|
|
|
|
|
|
1223
|
|
|
|
|
|
|
1; |
|
1224
|
|
|
|
|
|
|
__END__ |