line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
package Text::CSV::Merge; |
2
|
|
|
|
|
|
|
{ |
3
|
|
|
|
|
|
|
$Text::CSV::Merge::VERSION = '0.05'; |
4
|
|
|
|
|
|
|
} |
5
|
|
|
|
|
|
|
# ABSTRACT: Fill in gaps in a CSV file from another CSV file |
6
|
|
|
|
|
|
|
|
7
|
3
|
|
|
3
|
|
75005
|
use Modern::Perl '2010'; |
|
3
|
|
|
|
|
81419
|
|
|
3
|
|
|
|
|
21
|
|
8
|
3
|
|
|
3
|
|
60199
|
use autodie; |
|
3
|
|
|
|
|
68835
|
|
|
3
|
|
|
|
|
20
|
|
9
|
3
|
|
|
3
|
|
28793
|
use utf8; |
|
3
|
|
|
|
|
44
|
|
|
3
|
|
|
|
|
18
|
|
10
|
|
|
|
|
|
|
|
11
|
3
|
|
|
3
|
|
4967
|
use Moo 1.001000; |
|
3
|
|
|
|
|
52649
|
|
|
3
|
|
|
|
|
40
|
|
12
|
3
|
|
|
3
|
|
7402
|
use Carp; |
|
3
|
|
|
|
|
7
|
|
|
3
|
|
|
|
|
250
|
|
13
|
3
|
|
|
3
|
|
15
|
use IO::File; |
|
3
|
|
|
|
|
8
|
|
|
3
|
|
|
|
|
484
|
|
14
|
3
|
|
|
3
|
|
8657
|
use Text::CSV_XS; |
|
3
|
|
|
|
|
37682
|
|
|
3
|
|
|
|
|
318
|
|
15
|
3
|
|
|
3
|
|
40558
|
use DBI; # for DBD::CSV |
|
3
|
|
|
|
|
74514
|
|
|
3
|
|
|
|
|
292
|
|
16
|
3
|
|
|
3
|
|
4286
|
use Log::Dispatch; |
|
3
|
|
|
|
|
48265
|
|
|
3
|
|
|
|
|
5053
|
|
17
|
|
|
|
|
|
|
|
18
|
|
|
|
|
|
|
|
19
|
|
|
|
|
|
|
has +logger => ( |
20
|
|
|
|
|
|
|
is => 'lazy', |
21
|
|
|
|
|
|
|
builder => sub { |
22
|
0
|
|
|
0
|
|
0
|
Log::Dispatch->new( |
23
|
|
|
|
|
|
|
outputs => [ |
24
|
|
|
|
|
|
|
[ 'File', autoflush => 1, min_level => 'debug', filename => 'merge.log', newline => 1, mode => '>>' ], |
25
|
|
|
|
|
|
|
#[ 'Screen', min_level => 'info', newline => 1 ], |
26
|
|
|
|
|
|
|
], |
27
|
|
|
|
|
|
|
); |
28
|
|
|
|
|
|
|
} |
29
|
|
|
|
|
|
|
); |
30
|
|
|
|
|
|
|
|
31
|
|
|
|
|
|
|
has +csv_parser => ( |
32
|
|
|
|
|
|
|
is => 'lazy', |
33
|
|
|
|
|
|
|
builder => sub { |
34
|
0
|
0
|
|
0
|
|
0
|
Text::CSV_XS->new({ binary => 1, eol => $/ }) |
35
|
|
|
|
|
|
|
or croak("Cannot use module Text::CSV_XS: " . Text::CSV_XS->error_diag()); |
36
|
|
|
|
|
|
|
} |
37
|
|
|
|
|
|
|
); |
38
|
|
|
|
|
|
|
|
39
|
|
|
|
|
|
|
has +dbh => ( |
40
|
|
|
|
|
|
|
is => 'lazy', |
41
|
|
|
|
|
|
|
# must return only a code ref |
42
|
|
|
|
|
|
|
builder => sub { |
43
|
0
|
0
|
|
0
|
|
0
|
DBI->connect("dbi:CSV:", undef, undef, { |
44
|
|
|
|
|
|
|
RaiseError => 1, |
45
|
|
|
|
|
|
|
PrintError => 1, |
46
|
|
|
|
|
|
|
f_ext => ".csv/r", |
47
|
|
|
|
|
|
|
# Better performance with XS |
48
|
|
|
|
|
|
|
csv_class => "Text::CSV_XS", |
49
|
|
|
|
|
|
|
# csv_null => 1, |
50
|
|
|
|
|
|
|
}) or croak("Cannot connect to CSV file via DBI: $DBI::errstr"); |
51
|
|
|
|
|
|
|
} |
52
|
|
|
|
|
|
|
); |
53
|
|
|
|
|
|
|
|
54
|
|
|
|
|
|
|
has base_file => ( |
55
|
|
|
|
|
|
|
is => 'rw', |
56
|
|
|
|
|
|
|
required => 1, |
57
|
|
|
|
|
|
|
#allow external names to be different from class attribute |
58
|
|
|
|
|
|
|
init_arg => 'base', |
59
|
|
|
|
|
|
|
#validate it |
60
|
|
|
|
|
|
|
#isa => sub {}, |
61
|
|
|
|
|
|
|
coerce => sub { |
62
|
|
|
|
|
|
|
my $base_fh = IO::File->new( $_[0], '<' ) or croak("Open file: '$_[0]' failed: $!"); |
63
|
|
|
|
|
|
|
$base_fh->binmode(":utf8"); |
64
|
|
|
|
|
|
|
|
65
|
|
|
|
|
|
|
return $base_fh; |
66
|
|
|
|
|
|
|
} |
67
|
|
|
|
|
|
|
); |
68
|
|
|
|
|
|
|
|
69
|
|
|
|
|
|
|
has merge_file => ( |
70
|
|
|
|
|
|
|
# We use only the raw file name/path and do not create a FH here, unlike base_file(). |
71
|
|
|
|
|
|
|
is => 'rw', |
72
|
|
|
|
|
|
|
init_arg => 'merge', |
73
|
|
|
|
|
|
|
required => 1 |
74
|
|
|
|
|
|
|
); |
75
|
|
|
|
|
|
|
|
76
|
|
|
|
|
|
|
has output_file => ( |
77
|
|
|
|
|
|
|
is => 'rw', |
78
|
|
|
|
|
|
|
init_arg => 'output', |
79
|
|
|
|
|
|
|
# an output file name is NOT required |
80
|
|
|
|
|
|
|
required => 0, |
81
|
|
|
|
|
|
|
default => 'merged_output.csv', |
82
|
|
|
|
|
|
|
coerce => sub { |
83
|
|
|
|
|
|
|
my $output_fh = IO::File->new( $_[0], '>' ) or croak("Open file: '$_[0]' failed: $!"); |
84
|
|
|
|
|
|
|
$output_fh->binmode(":utf8"); |
85
|
|
|
|
|
|
|
|
86
|
|
|
|
|
|
|
return $output_fh; |
87
|
|
|
|
|
|
|
} |
88
|
|
|
|
|
|
|
); |
89
|
|
|
|
|
|
|
|
90
|
|
|
|
|
|
|
has columns=> ( |
91
|
|
|
|
|
|
|
is => 'rw', |
92
|
|
|
|
|
|
|
required => 1, |
93
|
|
|
|
|
|
|
); |
94
|
|
|
|
|
|
|
|
95
|
|
|
|
|
|
|
has search_field => ( |
96
|
|
|
|
|
|
|
is => 'rw', |
97
|
|
|
|
|
|
|
required => 1, |
98
|
|
|
|
|
|
|
init_arg => 'search' |
99
|
|
|
|
|
|
|
#, |
100
|
|
|
|
|
|
|
#isa => sub { |
101
|
|
|
|
|
|
|
# validate that search_field is one of the columns in the base file |
102
|
|
|
|
|
|
|
#die "Search parameter: '$_[0]' is not one of the columns: @{$self->columns}"; |
103
|
|
|
|
|
|
|
# unless ( $_[0] ~~ @{$self->columns} ); |
104
|
|
|
|
|
|
|
#} |
105
|
|
|
|
|
|
|
); |
106
|
|
|
|
|
|
|
|
107
|
|
|
|
|
|
|
has first_row_is_headers => ( |
108
|
|
|
|
|
|
|
is => 'rw', |
109
|
|
|
|
|
|
|
required => 1, |
110
|
|
|
|
|
|
|
#validate it |
111
|
|
|
|
|
|
|
isa => sub { |
112
|
|
|
|
|
|
|
# @TODO: there's got to be a better way to do this! |
113
|
|
|
|
|
|
|
croak("Option 'first_row_is_headers' must be 1 or 0") unless ( $_[0] =~ m{'1'|'0'}x || $_[0] == 1 || $_[0] == 0 ); |
114
|
|
|
|
|
|
|
}, |
115
|
|
|
|
|
|
|
); |
116
|
|
|
|
|
|
|
|
117
|
|
|
|
|
|
|
sub merge { |
118
|
0
|
|
|
0
|
1
|
0
|
my $self = shift; |
119
|
|
|
|
|
|
|
|
120
|
|
|
|
|
|
|
# validate that search_field is one of the columns in the base file |
121
|
0
|
|
|
|
|
0
|
croak("Search parameter: '$self->search_field' is not one of the columns: @{$self->columns}") |
|
0
|
|
|
|
|
0
|
|
122
|
0
|
0
|
|
|
|
0
|
unless ( scalar(grep { $_ eq $self->search_field } @{$self->columns}) ); |
|
0
|
|
|
|
|
0
|
|
123
|
|
|
|
|
|
|
# Use scalar() to force grep to return the number of matches; |
124
|
|
|
|
|
|
|
# 0 -> false for the 'unless' statement. |
125
|
|
|
|
|
|
|
|
126
|
0
|
|
|
|
|
0
|
$self->csv_parser->column_names( $self->columns ); |
127
|
|
|
|
|
|
|
|
128
|
|
|
|
|
|
|
# Loop through the base file to find missing data |
129
|
|
|
|
|
|
|
#@TODO: make into $self->rows? |
130
|
0
|
|
|
|
|
0
|
my @rows; |
131
|
|
|
|
|
|
|
|
132
|
0
|
|
|
|
|
0
|
while ( my $row = $self->csv_parser->getline_hr( $self->base_file ) ) { |
133
|
|
|
|
|
|
|
# skip column names |
134
|
0
|
0
|
0
|
|
|
0
|
next if ($. == 1 and $self->first_row_is_headers); |
135
|
|
|
|
|
|
|
|
136
|
0
|
0
|
|
|
|
0
|
if ( $self->csv_parser->parse($row) ) { |
137
|
|
|
|
|
|
|
# keep a list of null columns in this row |
138
|
0
|
|
|
|
|
0
|
my @nulls; |
139
|
|
|
|
|
|
|
|
140
|
|
|
|
|
|
|
# might be slightly more efficient to use while() |
141
|
0
|
|
|
|
|
0
|
foreach my $key ( keys %{$row} ) { |
|
0
|
|
|
|
|
0
|
|
142
|
|
|
|
|
|
|
# which fields is this row missing? |
143
|
0
|
0
|
0
|
|
|
0
|
if ( $row->{$key} eq 'NULL' or $row->{$key} eq "" ) { |
144
|
0
|
|
|
|
|
0
|
push @nulls, $key; |
145
|
|
|
|
|
|
|
|
146
|
0
|
|
|
|
|
0
|
$self->logger->info("Missing data in column: $key for '$row->{$self->search_field}'"); |
147
|
|
|
|
|
|
|
} |
148
|
|
|
|
|
|
|
} |
149
|
|
|
|
|
|
|
|
150
|
|
|
|
|
|
|
# make a hash of arrays |
151
|
0
|
0
|
|
|
|
0
|
if ( @nulls ) { |
152
|
|
|
|
|
|
|
# search $merge_file for the missing data's row |
153
|
0
|
|
|
|
|
0
|
local $" = ','; # reset the list separator for array interpolation to suit SQL |
154
|
|
|
|
|
|
|
|
155
|
|
|
|
|
|
|
# To get the original case for the columns, specify the column |
156
|
|
|
|
|
|
|
# names rather than using SELECT *, since it normalizes to |
157
|
|
|
|
|
|
|
# lowercase, per: |
158
|
|
|
|
|
|
|
# http://stackoverflow.com/questions/3350775/dbdcsv-returns-header-in-lower-case |
159
|
0
|
0
|
|
|
|
0
|
my $sth = $self->dbh->prepare( |
160
|
0
|
|
|
|
|
0
|
"select @{$self->columns} from $self->{merge_file} where $self->{search_field} = ?" |
161
|
|
|
|
|
|
|
) or croak("Cannot prepare DBI statement: " . $self->dbh->errstr ()); |
162
|
|
|
|
|
|
|
|
163
|
0
|
|
|
|
|
0
|
$sth->execute($row->{$self->search_field}); |
164
|
|
|
|
|
|
|
|
165
|
0
|
|
|
|
|
0
|
while ( my $filler = $sth->fetchrow_hashref() ) { |
166
|
0
|
|
|
|
|
0
|
foreach my $gap ( @nulls ) { |
167
|
0
|
0
|
0
|
|
|
0
|
if (exists $filler->{$gap} and defined $filler->{$gap} and $filler->{$gap} ne "") { |
|
|
|
0
|
|
|
|
|
168
|
0
|
|
|
|
|
0
|
$self->logger->info( |
169
|
|
|
|
|
|
|
"Found Data: '$gap' = '$filler->{$gap}' for '$row->{$self->search_field}'" |
170
|
|
|
|
|
|
|
); |
171
|
|
|
|
|
|
|
|
172
|
0
|
|
|
|
|
0
|
$row->{$gap} = $filler->{$gap}; |
173
|
|
|
|
|
|
|
} else { |
174
|
0
|
|
|
|
|
0
|
$self->logger->info( |
175
|
|
|
|
|
|
|
"Data not Found for column: '$gap' for '$row->{$self->search_field}' $self->{merge_file}" |
176
|
|
|
|
|
|
|
); |
177
|
|
|
|
|
|
|
} |
178
|
|
|
|
|
|
|
} |
179
|
|
|
|
|
|
|
} |
180
|
|
|
|
|
|
|
|
181
|
|
|
|
|
|
|
# Be efficient and neat! |
182
|
0
|
|
|
|
|
0
|
$sth->finish(); |
183
|
|
|
|
|
|
|
} |
184
|
|
|
|
|
|
|
|
185
|
|
|
|
|
|
|
# insert the updated row as a reference; even if not processed, the |
186
|
|
|
|
|
|
|
# row will still appear in the final output. |
187
|
0
|
|
|
|
|
0
|
push @rows, $row; |
188
|
|
|
|
|
|
|
} else { |
189
|
0
|
|
|
|
|
0
|
my $err = $self->csv_parser->error_input; |
190
|
0
|
|
|
|
|
0
|
$self->logger->error("Failed to parse line: $err"); |
191
|
|
|
|
|
|
|
} |
192
|
|
|
|
|
|
|
} |
193
|
|
|
|
|
|
|
|
194
|
|
|
|
|
|
|
# Ensure we've processed to the end of the file |
195
|
0
|
0
|
|
|
|
0
|
$self->csv_parser->eof or $self->csv_parser->error_diag(); |
196
|
|
|
|
|
|
|
|
197
|
|
|
|
|
|
|
# print does NOT want an actual array! Use a hash slice, instead: |
198
|
|
|
|
|
|
|
#$self->csv_parser->print($output_fh, [ @$_{@columns} ]) for @rows; |
199
|
|
|
|
|
|
|
# |
200
|
|
|
|
|
|
|
# Or, here I've switched to Text::CSV_XS's specific print_hr(), which |
201
|
|
|
|
|
|
|
# is simply missing from the PP (Pure Perl) version. |
202
|
0
|
|
|
|
|
0
|
$self->csv_parser->print_hr($self->output_file, $_) for @rows; |
203
|
|
|
|
|
|
|
|
204
|
0
|
|
|
|
|
0
|
return 1; |
205
|
|
|
|
|
|
|
}; |
206
|
|
|
|
|
|
|
|
207
|
|
|
|
|
|
|
sub DEMOLISH { |
208
|
1
|
|
|
1
|
1
|
3050
|
my $self = shift; |
209
|
|
|
|
|
|
|
|
210
|
|
|
|
|
|
|
## Clean up! |
211
|
1
|
|
|
|
|
8
|
$self->base_file->close(); |
212
|
1
|
50
|
|
|
|
674
|
$self->output_file->close() or croak("Close 'output.csv' failed: $!"); |
213
|
|
|
|
|
|
|
|
214
|
1
|
|
|
|
|
757
|
return; |
215
|
|
|
|
|
|
|
} |
216
|
|
|
|
|
|
|
|
217
|
|
|
|
|
|
|
|
218
|
|
|
|
|
|
|
1; |
219
|
|
|
|
|
|
|
|
220
|
|
|
|
|
|
|
__END__ |