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package Statistics::RserveClient; |
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use strict; |
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use Exporter (); |
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use vars qw($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS); |
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our $VERSION = '0.12'; #VERSION |
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@ISA = qw(Exporter); |
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our @EXPORT = qw( TRUE FALSE ); |
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our @EXPORT_OK = ( |
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'XT_NULL', 'XT_INT', |
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'XT_DOUBLE', 'XT_STR', |
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'XT_LANG', 'XT_SYM', |
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'XT_BOOL', 'XT_S4', |
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'XT_VECTOR', 'XT_LIST', |
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'XT_CLOS', 'XT_SYMNAME', |
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'XT_LIST_NOTAG', 'XT_LIST_TAG', |
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'XT_LANG_NOTAG', 'XT_LANG_TAG', |
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'XT_VECTOR_EXP', 'XT_VECTOR_STR', |
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'XT_ARRAY_INT', 'XT_ARRAY_DOUBLE', |
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'XT_ARRAY_STR', 'XT_ARRAY_BOOL_UA', |
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'XT_ARRAY_BOOL', 'XT_RAW', |
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'XT_ARRAY_CPLX', 'XT_UNKNOWN', |
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'XT_FACTOR', 'XT_HAS_ATTR', |
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); |
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our %EXPORT_TAGS = ( |
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xt_types => [ |
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'XT_NULL', 'XT_INT', |
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'XT_DOUBLE', 'XT_STR', |
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'XT_LANG', 'XT_SYM', |
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'XT_BOOL', 'XT_S4', |
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'XT_VECTOR', 'XT_LIST', |
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'XT_CLOS', 'XT_SYMNAME', |
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'XT_LIST_NOTAG', 'XT_LIST_TAG', |
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'XT_LANG_NOTAG', 'XT_LANG_TAG', |
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'XT_VECTOR_EXP', 'XT_VECTOR_STR', |
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'XT_ARRAY_INT', 'XT_ARRAY_DOUBLE', |
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'XT_ARRAY_STR', 'XT_ARRAY_BOOL_UA', |
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'XT_ARRAY_BOOL', 'XT_RAW', |
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'XT_ARRAY_CPLX', 'XT_UNKNOWN', |
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'XT_FACTOR', 'XT_HAS_ATTR', |
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] |
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); |
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48
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49
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#################### main pod documentation begin ################### |
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51
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=head1 NAME |
52
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53
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Statistics::RserveClient - An Rserve Client library for the R statistics platform. |
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55
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=head1 SYNOPSIS |
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57
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use Statistics::RserveClient::Connection; |
58
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59
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my $cnx = new Statistics::RserveClient::Connection('localhost'); |
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my @result = $cnx->evalString("x='Hello, world!'; x"); |
61
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62
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=head1 DESCRIPTION |
63
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64
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Rserve provides a connection-oriented network interface to the R |
65
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statistical platform. The Statistics::RserveClient package provides a |
66
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Perl client library to enable interaction with Rserve from within Perl |
67
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applications. |
68
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69
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Using RserveClient, your Perl application can pass strings to Rserve |
70
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for evaluation by R. The results are returned as Perl arrays. |
71
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72
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=head1 USAGE |
73
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74
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use Statistics::RserveClient::Connection; |
75
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76
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my $cnx = new Statistics::RserveClient::Connection('localhost'); |
77
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my @result = $cnx->evalString("x='Hello, world!'; x"); |
78
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79
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80
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=head1 BUGS |
81
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82
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This library does not yet support the full rserve protocol. For |
83
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example, long packets are not supported. |
84
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85
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=head1 SUPPORT |
86
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87
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Please visit http://github.com/djun-kim/Statistics--RserveClient to |
88
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view/file bug reports and feature requests and to browse additional |
89
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documentation. |
90
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91
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=head1 AUTHOR |
92
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93
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Djun M. Kim |
94
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CPAN ID: DJUNKIM |
95
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Cielo Systems Inc. |
96
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info@cielosystems.com |
97
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http://github.org/djun-kim/Statistics--RserveClient/wiki |
98
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99
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=head1 COPYRIGHT |
100
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101
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This program is free software licensed under the... |
102
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103
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The General Public License (GPL) |
104
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Version 2, June 1991 |
105
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106
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The full text of the license can be found in the |
107
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LICENSE file included with this module. |
108
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109
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=head1 ACKNOWLEDGEMENTS |
110
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111
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This software was partially funded through the financial assistance of |
112
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the University of British Columbia, via a Teaching and Learning |
113
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Enhancement Fund project led by Dr. Bruce Dunham (UBC Statistics). |
114
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115
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The author would also like to thank Dr. Davor Cubranic (UBC |
116
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Statistics) for many improvements to the code, in particular most of |
117
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the tests. |
118
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119
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=head1 SEE ALSO |
120
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121
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rserve: (http://www.rforge.net/Rserve/) |
122
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123
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R project: http://r-project.org |
124
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125
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=cut |
126
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127
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#################### main pod documentation end ################### |
128
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129
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#use warnings; |
130
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#use autodie; |
131
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132
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1
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1
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6
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use constant FALSE => 0; |
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1
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1
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85
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133
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1
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1
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5
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use constant TRUE => 1; |
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1
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1
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48
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134
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135
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1
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1
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5
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use constant DebugLogfile => "/tmp/rserve-debug.log"; |
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1
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3
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1
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361
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136
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137
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open(DEBUGLOG, '>'.DebugLogfile) or die("can't open debug log: $!\n"); |
138
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139
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my %typeHash = (); |
140
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141
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my $DEBUG = FALSE; |
142
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143
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## |
144
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# =head2 debug() |
145
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# |
146
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# Usage : debug("This is a debug message;"); |
147
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# Purpose : Prints a string to the debugging output stream. |
148
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# Argument : A string to be output to the debug stream. |
149
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# |
150
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# =cut |
151
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152
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sub debug($) { |
153
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0
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0
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0
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0
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my $msg = shift; |
154
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0
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0
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$msg = "debug [". caller() . "] $msg"; |
155
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0
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0
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0
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print DEBUGLOG $msg if ($DEBUG); |
156
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0
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0
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return 1; |
157
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} |
158
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159
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## |
160
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# =head2 buf2str() |
161
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# |
162
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# Usage : buf2str(\@buf); |
163
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# Purpose : Takes a (reference to) a given array and returns a string representation |
164
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# Argument : A reference to an array. |
165
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# Returns : A string representation of the given array. |
166
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# Comments : Utility routine, intended to help printing debugging output. |
167
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# |
168
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# =cut |
169
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170
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sub buf2str { |
171
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0
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0
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0
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0
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my $r = shift; |
172
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0
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0
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my @buf = @{$r}; |
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0
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0
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173
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0
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0
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my $pbuf = ""; |
174
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0
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0
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for (my $idx = 0; $idx < @buf; $idx++) { |
175
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0
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0
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my $c = $buf[$idx]; |
176
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0
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0
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my $ord = ord($c); |
177
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0
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0
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0
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if ($ord < ord('A')) { |
178
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0
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0
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$c = ""; |
179
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} |
180
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0
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0
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$pbuf .= "[$idx:$ord:$c]"; |
181
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0
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0
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0
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if ($idx % 8 == 7) {$pbuf .= "\n"}; |
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0
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0
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182
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}; |
183
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0
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0
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return $pbuf; |
184
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} |
185
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186
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# xpression type: NULL |
187
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1
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1
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5
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use constant XT_NULL => 0; |
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1
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2
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1
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55
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188
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$typeHash{0} = 'XT_NULL'; |
189
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190
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# xpression type: integer |
191
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1
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1
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5
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use constant XT_INT => 1; |
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1
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2
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1
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53
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192
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$typeHash{1} = 'XT_INT'; |
193
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194
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# xpression type: double |
195
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1
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1
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5
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use constant XT_DOUBLE => 2; |
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1
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2
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1
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47
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196
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$typeHash{2} = 'XT_DOUBLE'; |
197
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198
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# xpression type: String |
199
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1
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1
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5
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use constant XT_STR => 3; |
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1
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1
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1
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51
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200
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$typeHash{3} = 'XT_STR'; |
201
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202
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# xpression type: language construct (currently content is same as list) |
203
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1
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1
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4
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use constant XT_LANG => 4; |
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1
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2
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1
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45
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204
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$typeHash{4} = 'XT_LANG'; |
205
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206
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# xpression type: symbol (content is symbol name: String) |
207
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1
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1
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5
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use constant XT_SYM => 5; |
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1
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1
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1
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62
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208
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$typeHash{5} = 'XT_SYM'; |
209
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210
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# xpression type: RBool |
211
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1
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1
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4
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use constant XT_BOOL => 6; |
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1
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2
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1
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45
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212
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$typeHash{6} = 'XT_BOOL'; |
213
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214
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# xpression type: S4 object |
215
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# @since Rserve 0.5 |
216
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1
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1
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16
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use constant XT_S4 => 7; |
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1
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2
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1
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52
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217
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$typeHash{7} = 'XT_S4'; |
218
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219
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# xpression type: generic vector (RList) |
220
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1
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1
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5
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use constant XT_VECTOR => 16; |
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1
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1
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1
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56
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221
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$typeHash{16} = 'XT_VECTOR'; |
222
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223
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# xpression type: dotted-pair list (RList) |
224
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1
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1
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4
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use constant XT_LIST => 17; |
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1
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2
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1
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45
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225
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$typeHash{17} = 'XT_LIST'; |
226
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227
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# xpression type: closure |
228
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# (there is no java class for that type (yet?). |
229
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# Currently the body of the closure is stored in the content |
230
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# part of the REXP. Please note that this may change in the future!) |
231
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1
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1
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20
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use constant XT_CLOS => 18; |
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1
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1
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1
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54
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232
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$typeHash{18} = 'XT_CLOS'; |
233
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234
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# xpression type: symbol name |
235
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# @since Rserve 0.5 |
236
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1
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1
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5
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use constant XT_SYMNAME => 19; |
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1
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2
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1
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49
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237
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$typeHash{19} = 'XT_SYMNAME'; |
238
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239
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# xpression type: dotted-pair list (w/o tags) |
240
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# @since Rserve 0.5 |
241
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1
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1
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4
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use constant XT_LIST_NOTAG => 20; |
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1
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1
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1
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56
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242
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$typeHash{20} = 'LIST_NOTAG'; |
243
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244
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# xpression type: dotted-pair list (w tags) |
245
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# @since Rserve 0.5 |
246
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1
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1
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4
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use constant XT_LIST_TAG => 21; |
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1
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2
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1
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72
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247
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$typeHash{21} = 'LIST_TAG'; |
248
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249
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# xpression type: language list (w/o tags) |
250
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# @since Rserve 0.5 |
251
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1
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1
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6
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use constant XT_LANG_NOTAG => 22; |
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1
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2
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1
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42
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252
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$typeHash{22} = 'LANG_NOTAG'; |
253
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254
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# xpression type: language list (w tags) |
255
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# @since Rserve 0.5 |
256
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1
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1
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4
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use constant XT_LANG_TAG => 23; |
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1
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8
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1
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43
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257
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$typeHash{23} = 'LANG_TAG'; |
258
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259
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# xpression type: expression vector |
260
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1
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1
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5
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use constant XT_VECTOR_EXP => 26; |
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1
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2
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1
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48
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261
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$typeHash{26} = 'VECTOR_EXP'; |
262
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263
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# xpression type: string vector |
264
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1
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1
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5
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use constant XT_VECTOR_STR => 27; |
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1
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2
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1
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41
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265
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$typeHash{27} = 'VECTOR_STR'; |
266
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267
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# xpression type: int[] |
268
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1
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1
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4
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use constant XT_ARRAY_INT => 32; |
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1
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2
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1
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52
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269
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$typeHash{32} = 'ARRAY_INT'; |
270
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271
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# xpression type: double[] |
272
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1
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1
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4
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use constant XT_ARRAY_DOUBLE => 33; |
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1
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2
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1
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60
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273
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$typeHash{33} = 'ARRAY_DOUBLE'; |
274
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275
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# xpression type: String[] (currently not used, Vector is used instead) |
276
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1
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1
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5
|
use constant XT_ARRAY_STR => 34; |
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1
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2
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1
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47
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277
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$typeHash{34} = 'ARRAY_STR'; |
278
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279
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# internal use only! this constant should never appear in a REXP |
280
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1
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1
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5
|
use constant XT_ARRAY_BOOL_UA => 35; |
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1
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2
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1
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52
|
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281
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$typeHash{35} = 'XT_ARRAY_BOOL_UA'; |
282
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283
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# xpression type: RBool[] |
284
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1
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1
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4
|
use constant XT_ARRAY_BOOL => 36; |
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1
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2
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1
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50
|
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285
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$typeHash{36} = 'XT_ARRAY_BOOL'; |
286
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287
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# xpression type: raw (byte[]) |
288
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# @since Rserve 0.4-? |
289
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1
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1
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4
|
use constant XT_RAW => 37; |
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1
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2
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1
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43
|
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290
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$typeHash{37} = 'XT_RAW'; |
291
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292
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# xpression type: Complex[] |
293
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# @since Rserve 0.5 |
294
|
1
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|
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1
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|
5
|
use constant XT_ARRAY_CPLX => 38; |
|
1
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1
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1
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48
|
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295
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|
$typeHash{38} = 'ARRAY_CPLX'; |
296
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297
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|
# xpression type: unknown; no assumptions can be made about the content |
298
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1
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1
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|
5
|
use constant XT_UNKNOWN => 48; |
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1
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1
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1
|
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42
|
|
299
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$typeHash{48} = 'XT_UNKNOWN'; |
300
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301
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# xpression type: RFactor; this XT is internally generated (ergo is |
302
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# does not come from Rsrv.h) to support RFactor class which is built |
303
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|
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|
# from XT_ARRAY_INT |
304
|
1
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|
|
1
|
|
4
|
use constant XT_FACTOR => 127; |
|
1
|
|
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|
|
11
|
|
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1
|
|
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|
|
532
|
|
305
|
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|
$typeHash{127} = 'XT_FACTOR'; |
306
|
|
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307
|
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|
# used for transport only - has attribute |
308
|
1
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1
|
|
6
|
use constant XT_HAS_ATTR => 128; |
|
1
|
|
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|
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3
|
|
|
1
|
|
|
|
|
157
|
|
309
|
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|
|
$typeHash{128} = 'HAS_ATTR'; |
310
|
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311
|
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|
|
sub import { |
312
|
|
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|
|
|
|
|
313
|
1
|
|
|
1
|
|
125
|
Statistics::RserveClient->export_to_level( 1, @_ ); |
314
|
|
|
|
|
|
|
|
315
|
|
|
|
|
|
|
} |
316
|
|
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|
317
|
|
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318
|
|
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|
1; |
319
|
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|
# The preceding line will help the module return a true value |