| line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
|
1
|
|
|
|
|
|
|
package SNA::Network::Algorithm::PageRank; |
|
2
|
|
|
|
|
|
|
|
|
3
|
14
|
|
|
14
|
|
74
|
use strict; |
|
|
14
|
|
|
|
|
30
|
|
|
|
14
|
|
|
|
|
539
|
|
|
4
|
14
|
|
|
14
|
|
74
|
use warnings; |
|
|
14
|
|
|
|
|
514
|
|
|
|
14
|
|
|
|
|
496
|
|
|
5
|
|
|
|
|
|
|
|
|
6
|
|
|
|
|
|
|
require Exporter; |
|
7
|
14
|
|
|
14
|
|
71
|
use base qw(Exporter); |
|
|
14
|
|
|
|
|
23
|
|
|
|
14
|
|
|
|
|
1418
|
|
|
8
|
|
|
|
|
|
|
our @EXPORT = qw(calculate_pageranks calculate_weighted_pageranks); |
|
9
|
|
|
|
|
|
|
|
|
10
|
14
|
|
|
14
|
|
98
|
use List::Util qw(sum); |
|
|
14
|
|
|
|
|
42
|
|
|
|
14
|
|
|
|
|
10659
|
|
|
11
|
|
|
|
|
|
|
|
|
12
|
|
|
|
|
|
|
|
|
13
|
|
|
|
|
|
|
=head1 NAME |
|
14
|
|
|
|
|
|
|
|
|
15
|
|
|
|
|
|
|
SNA::Network::Algorithm::PageRank - implementation of the PageRank algorithm |
|
16
|
|
|
|
|
|
|
|
|
17
|
|
|
|
|
|
|
|
|
18
|
|
|
|
|
|
|
=head1 SYNOPSIS |
|
19
|
|
|
|
|
|
|
|
|
20
|
|
|
|
|
|
|
use SNA::Network; |
|
21
|
|
|
|
|
|
|
|
|
22
|
|
|
|
|
|
|
my $net = SNA::Network->new(); |
|
23
|
|
|
|
|
|
|
$net->load_from_pajek_net($filename); |
|
24
|
|
|
|
|
|
|
... |
|
25
|
|
|
|
|
|
|
$net->calculate_pageranks(); |
|
26
|
|
|
|
|
|
|
|
|
27
|
|
|
|
|
|
|
|
|
28
|
|
|
|
|
|
|
=head1 METHODS |
|
29
|
|
|
|
|
|
|
|
|
30
|
|
|
|
|
|
|
The following methods are added to L. |
|
31
|
|
|
|
|
|
|
|
|
32
|
|
|
|
|
|
|
=head2 calculate_pageranks |
|
33
|
|
|
|
|
|
|
|
|
34
|
|
|
|
|
|
|
Calculates PageRank values for all nodes. |
|
35
|
|
|
|
|
|
|
Stores the values under the hash entry B for each node object. |
|
36
|
|
|
|
|
|
|
|
|
37
|
|
|
|
|
|
|
You can pass named parameters to control the algorithm: |
|
38
|
|
|
|
|
|
|
B specifies the number of iterations to use, and defaults to 20. |
|
39
|
|
|
|
|
|
|
B specifies the damping factor of PageRank and defaults to 0.15. |
|
40
|
|
|
|
|
|
|
|
|
41
|
|
|
|
|
|
|
=cut |
|
42
|
|
|
|
|
|
|
|
|
43
|
|
|
|
|
|
|
sub calculate_pageranks { |
|
44
|
1
|
|
|
1
|
1
|
10
|
my ($self, %params) = @_; |
|
45
|
|
|
|
|
|
|
|
|
46
|
1
|
|
50
|
|
|
22
|
my $iterations = $params{iterations} || 20; |
|
47
|
1
|
|
|
|
|
2
|
my $damping = $params{damping}; |
|
48
|
1
|
50
|
|
|
|
4
|
$damping = 0.15 unless defined $damping; |
|
49
|
|
|
|
|
|
|
|
|
50
|
1
|
|
|
|
|
5
|
my $num_nodes = int $self->nodes; |
|
51
|
|
|
|
|
|
|
|
|
52
|
|
|
|
|
|
|
# sink nodes (nodes without successors) result into a random jumo |
|
53
|
1
|
|
|
|
|
3
|
my @sink_nodes = grep { $_->out_degree == 0 } $self->nodes; |
|
|
4
|
|
|
|
|
14
|
|
|
54
|
1
|
|
|
|
|
4
|
my @non_sinks = grep { $_->out_degree > 0 } $self->nodes; |
|
|
4
|
|
|
|
|
12
|
|
|
55
|
|
|
|
|
|
|
|
|
56
|
|
|
|
|
|
|
# start with 1.0 for each node |
|
57
|
1
|
|
|
|
|
6
|
foreach my $node ($self->nodes) { |
|
58
|
4
|
|
|
|
|
19
|
$node->{pagerank} = 1.0; } |
|
59
|
|
|
|
|
|
|
|
|
60
|
|
|
|
|
|
|
# iterative approximation |
|
61
|
1
|
|
|
|
|
6
|
for (1 .. $iterations) { |
|
62
|
20
|
|
|
|
|
27
|
my $sinks_pr = sum 0, map { $_->{pagerank} } @sink_nodes; |
|
|
20
|
|
|
|
|
65
|
|
|
63
|
20
|
|
|
|
|
28
|
my $pr_from_sinks = $sinks_pr / $num_nodes; |
|
64
|
20
|
|
|
|
|
20
|
my $flowing_pr = $num_nodes - $sinks_pr; |
|
65
|
20
|
|
|
|
|
22
|
my $pr_from_jumps = $flowing_pr * $damping / $num_nodes; |
|
66
|
|
|
|
|
|
|
|
|
67
|
20
|
|
|
|
|
47
|
foreach my $node ($self->nodes) { |
|
68
|
80
|
|
|
|
|
160
|
$node->{new_pr} = $pr_from_jumps + $pr_from_sinks; |
|
69
|
|
|
|
|
|
|
} |
|
70
|
|
|
|
|
|
|
|
|
71
|
20
|
|
|
|
|
34
|
foreach my $node (@non_sinks) { |
|
72
|
60
|
|
|
|
|
166
|
my $outgoing_pr = (1 - $damping) * $node->{pagerank} / $node->out_degree; |
|
73
|
60
|
|
|
|
|
193
|
foreach my $successor ($node->outgoing_nodes) { |
|
74
|
120
|
|
|
|
|
276
|
$successor->{new_pr} += $outgoing_pr; |
|
75
|
|
|
|
|
|
|
} |
|
76
|
|
|
|
|
|
|
} |
|
77
|
|
|
|
|
|
|
|
|
78
|
|
|
|
|
|
|
# copy new values |
|
79
|
20
|
|
|
|
|
50
|
foreach my $node ($self->nodes) { |
|
80
|
80
|
|
|
|
|
131
|
$node->{pagerank} = $node->{new_pr}; |
|
81
|
|
|
|
|
|
|
} |
|
82
|
|
|
|
|
|
|
} |
|
83
|
|
|
|
|
|
|
} |
|
84
|
|
|
|
|
|
|
|
|
85
|
|
|
|
|
|
|
|
|
86
|
|
|
|
|
|
|
=head2 calculate_weighted_pageranks |
|
87
|
|
|
|
|
|
|
|
|
88
|
|
|
|
|
|
|
Intuitive extension of PageRank to weighted networks. |
|
89
|
|
|
|
|
|
|
|
|
90
|
|
|
|
|
|
|
Same as above, but treating edge weights as relative probabilities |
|
91
|
|
|
|
|
|
|
for the node transitions. |
|
92
|
|
|
|
|
|
|
Stores the values under the hash entry B for each node object, |
|
93
|
|
|
|
|
|
|
the same key as above! |
|
94
|
|
|
|
|
|
|
|
|
95
|
|
|
|
|
|
|
You can pass the same parameters as above. |
|
96
|
|
|
|
|
|
|
|
|
97
|
|
|
|
|
|
|
On a weighted network, you usually want this method's values'. |
|
98
|
|
|
|
|
|
|
|
|
99
|
|
|
|
|
|
|
=cut |
|
100
|
|
|
|
|
|
|
|
|
101
|
|
|
|
|
|
|
sub calculate_weighted_pageranks { |
|
102
|
0
|
|
|
0
|
1
|
|
my ($self, %params) = @_; |
|
103
|
|
|
|
|
|
|
|
|
104
|
0
|
|
0
|
|
|
|
my $iterations = $params{iterations} || 20; |
|
105
|
0
|
|
|
|
|
|
my $damping = $params{damping}; |
|
106
|
0
|
0
|
|
|
|
|
$damping = 0.15 unless defined $damping; |
|
107
|
|
|
|
|
|
|
|
|
108
|
0
|
|
|
|
|
|
my $num_nodes = int $self->nodes; |
|
109
|
|
|
|
|
|
|
|
|
110
|
|
|
|
|
|
|
# sink nodes (nodes without successors) result into a random jumo |
|
111
|
0
|
|
|
|
|
|
my @sink_nodes = grep { $_->out_degree == 0 } $self->nodes; |
|
|
0
|
|
|
|
|
|
|
|
112
|
0
|
|
|
|
|
|
my @non_sinks = grep { $_->out_degree > 0 } $self->nodes; |
|
|
0
|
|
|
|
|
|
|
|
113
|
|
|
|
|
|
|
|
|
114
|
|
|
|
|
|
|
# start with 1.0 for each node |
|
115
|
0
|
|
|
|
|
|
foreach my $node ($self->nodes) { |
|
116
|
0
|
|
|
|
|
|
$node->{pagerank} = 1.0; |
|
117
|
|
|
|
|
|
|
} |
|
118
|
|
|
|
|
|
|
|
|
119
|
|
|
|
|
|
|
# iterative approximation |
|
120
|
0
|
|
|
|
|
|
for (1 .. $iterations) { |
|
121
|
0
|
|
|
|
|
|
my $sinks_pr = sum 0, map { $_->{pagerank} } @sink_nodes; |
|
|
0
|
|
|
|
|
|
|
|
122
|
0
|
|
|
|
|
|
my $pr_from_sinks = $sinks_pr / $num_nodes; |
|
123
|
0
|
|
|
|
|
|
my $flowing_pr = $num_nodes - $sinks_pr; |
|
124
|
0
|
|
|
|
|
|
my $pr_from_jumps = $flowing_pr * $damping / $num_nodes; |
|
125
|
|
|
|
|
|
|
|
|
126
|
0
|
|
|
|
|
|
foreach my $node ($self->nodes) { |
|
127
|
0
|
|
|
|
|
|
$node->{new_pr} = $pr_from_jumps + $pr_from_sinks; |
|
128
|
|
|
|
|
|
|
} |
|
129
|
|
|
|
|
|
|
|
|
130
|
0
|
|
|
|
|
|
foreach my $node (@non_sinks) { |
|
131
|
0
|
|
|
|
|
|
my $outgoing_pr = (1 - $damping) * $node->{pagerank} / $node->weighted_out_degree; |
|
132
|
0
|
|
|
|
|
|
foreach my $outgoing_link ($node->outgoing_edges) { |
|
133
|
0
|
|
|
|
|
|
$outgoing_link->target->{new_pr} += $outgoing_pr * $outgoing_link->weight; |
|
134
|
|
|
|
|
|
|
} |
|
135
|
|
|
|
|
|
|
} |
|
136
|
|
|
|
|
|
|
|
|
137
|
|
|
|
|
|
|
# copy new values |
|
138
|
0
|
|
|
|
|
|
foreach my $node ($self->nodes) { |
|
139
|
0
|
|
|
|
|
|
$node->{pagerank} = $node->{new_pr}; |
|
140
|
|
|
|
|
|
|
} |
|
141
|
|
|
|
|
|
|
} |
|
142
|
|
|
|
|
|
|
} |
|
143
|
|
|
|
|
|
|
|
|
144
|
|
|
|
|
|
|
|
|
145
|
|
|
|
|
|
|
=head1 AUTHOR |
|
146
|
|
|
|
|
|
|
|
|
147
|
|
|
|
|
|
|
Darko Obradovic, C<< >> |
|
148
|
|
|
|
|
|
|
|
|
149
|
|
|
|
|
|
|
=head1 BUGS |
|
150
|
|
|
|
|
|
|
|
|
151
|
|
|
|
|
|
|
Please report any bugs or feature requests to C, or through |
|
152
|
|
|
|
|
|
|
the web interface at L. I will be notified, and then you'll |
|
153
|
|
|
|
|
|
|
automatically be notified of progress on your bug as I make changes. |
|
154
|
|
|
|
|
|
|
|
|
155
|
|
|
|
|
|
|
|
|
156
|
|
|
|
|
|
|
|
|
157
|
|
|
|
|
|
|
|
|
158
|
|
|
|
|
|
|
=head1 SUPPORT |
|
159
|
|
|
|
|
|
|
|
|
160
|
|
|
|
|
|
|
You can find documentation for this module with the perldoc command. |
|
161
|
|
|
|
|
|
|
|
|
162
|
|
|
|
|
|
|
perldoc SNA::Network |
|
163
|
|
|
|
|
|
|
|
|
164
|
|
|
|
|
|
|
|
|
165
|
|
|
|
|
|
|
You can also look for information at: |
|
166
|
|
|
|
|
|
|
|
|
167
|
|
|
|
|
|
|
=over 4 |
|
168
|
|
|
|
|
|
|
|
|
169
|
|
|
|
|
|
|
=item * RT: CPAN's request tracker |
|
170
|
|
|
|
|
|
|
|
|
171
|
|
|
|
|
|
|
L |
|
172
|
|
|
|
|
|
|
|
|
173
|
|
|
|
|
|
|
=item * AnnoCPAN: Annotated CPAN documentation |
|
174
|
|
|
|
|
|
|
|
|
175
|
|
|
|
|
|
|
L |
|
176
|
|
|
|
|
|
|
|
|
177
|
|
|
|
|
|
|
=item * CPAN Ratings |
|
178
|
|
|
|
|
|
|
|
|
179
|
|
|
|
|
|
|
L |
|
180
|
|
|
|
|
|
|
|
|
181
|
|
|
|
|
|
|
=item * Search CPAN |
|
182
|
|
|
|
|
|
|
|
|
183
|
|
|
|
|
|
|
L |
|
184
|
|
|
|
|
|
|
|
|
185
|
|
|
|
|
|
|
=back |
|
186
|
|
|
|
|
|
|
|
|
187
|
|
|
|
|
|
|
|
|
188
|
|
|
|
|
|
|
=head1 ACKNOWLEDGEMENTS |
|
189
|
|
|
|
|
|
|
|
|
190
|
|
|
|
|
|
|
|
|
191
|
|
|
|
|
|
|
=head1 COPYRIGHT & LICENSE |
|
192
|
|
|
|
|
|
|
|
|
193
|
|
|
|
|
|
|
Copyright 2009 Darko Obradovic, all rights reserved. |
|
194
|
|
|
|
|
|
|
|
|
195
|
|
|
|
|
|
|
This program is free software; you can redistribute it and/or modify it |
|
196
|
|
|
|
|
|
|
under the same terms as Perl itself. |
|
197
|
|
|
|
|
|
|
|
|
198
|
|
|
|
|
|
|
|
|
199
|
|
|
|
|
|
|
=cut |
|
200
|
|
|
|
|
|
|
|
|
201
|
|
|
|
|
|
|
1; # End of SNA::Network::Algorithm::PageRank |
|
202
|
|
|
|
|
|
|
|