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# RDF::Trine::Graph |
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# ----------------------------------------------------------------------------- |
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=head1 NAME |
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RDF::Trine::Graph - Materialized RDF Graphs for testing isomorphism |
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=head1 VERSION |
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This document describes RDF::Trine::Graph version 1.017 |
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=head1 SYNOPSIS |
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use RDF::Trine::Graph; |
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my $a = RDF::Trine::Graph->new( $model_a ); |
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my $b = RDF::Trine::Graph->new( $model_b ); |
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print "graphs are " . ($a->equals( $b ) ? "the same" : "different"); |
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=head1 DESCRIPTION |
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RDF::Trine::Graph provdes a mechanism for testing graph isomorphism based on |
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graph triples from either a RDF::Trine::Model or a RDF::Trine::Iterator. |
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Isomorphism testing requires materializing all of a graph's triples in memory, |
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and so should be used carefully in situations with large graphs. |
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=head1 METHODS |
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=over 4 |
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=cut |
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package RDF::Trine::Graph; |
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use strict; |
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use warnings; |
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no warnings 'redefine'; |
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use Algorithm::Combinatorics qw(permutations); |
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our ($VERSION, $debug, $AUTOLOAD); |
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BEGIN { |
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$debug = 0; |
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$VERSION = '1.017'; |
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} |
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use overload |
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'==' => \&RDF::Trine::Graph::_eq, |
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'eq' => \&RDF::Trine::Graph::_eq, |
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'le' => \&RDF::Trine::Graph::_le, |
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'ge' => \&RDF::Trine::Graph::_ge, |
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'lt' => \&RDF::Trine::Graph::_lt, |
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'gt' => \&RDF::Trine::Graph::_gt, |
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sub _eq { |
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my ($x, $y) = @_; |
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return $x->equals($y); |
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} |
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sub _le { |
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my ($x, $y) = @_; |
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return $x->is_subgraph_of($y); |
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} |
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sub _ge { |
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return _le(@_[1,0]); |
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} |
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sub _lt { |
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my ($x, $y) = @_; |
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# Test::More::diag(sprintf('%s // %s', ref($x), ref($y))); |
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return ($x->size < $y->size) && ($x->is_subgraph_of($y)); |
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} |
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sub _gt { |
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return _lt(@_[1,0]); |
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} |
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use Data::Dumper; |
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use Log::Log4perl; |
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use Scalar::Util qw(blessed); |
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use RDF::Trine::Node; |
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use RDF::Trine::Store; |
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=item C<< new ( $model ) >> |
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=item C<< new ( $iterator ) >> |
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Returns a new graph from the given RDF::Trine::Model or RDF::Trine::Iterator::Graph object. |
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=cut |
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sub new { |
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my $class = shift; |
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unless (blessed($_[0])) { |
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throw RDF::Trine::Error::MethodInvocationError -text => "RDF::Trine::Graph::new must be called with a Model or Iterator argument"; |
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} |
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my %data; |
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if ($_[0]->isa('RDF::Trine::Iterator::Graph')) { |
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my $iter = shift; |
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my $model = RDF::Trine::Model->new( RDF::Trine::Store->temporary_store() ); |
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while (my $st = $iter->next) { |
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$model->add_statement( $st ); |
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} |
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$data{ model } = $model; |
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} elsif ($_[0]->isa('RDF::Trine::Model')) { |
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$data{ model } = shift; |
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} else { |
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throw RDF::Trine::Error::MethodInvocationError -text => "RDF::Trine::Graph::new must be called with a Model or Iterator argument"; |
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} |
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my $self = bless(\%data, $class); |
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} |
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=item C<< equals ( $graph ) >> |
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Returns true if the invocant and $graph represent two equal RDF graphs (e.g. |
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there exists a bijection between the RDF statements of the invocant and $graph). |
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=cut |
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sub equals { |
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my $self = shift; |
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my $graph = shift; |
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undef($self->{error}); |
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return $self->_check_equality($graph) ? 1 : 0; |
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} |
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sub _check_equality { |
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my $self = shift; |
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my $graph = shift; |
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unless (blessed($graph) and $graph->isa('RDF::Trine::Graph')) { |
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$self->{error} = "RDF::Trine::Graph::equals must be called with a Graph argument"; |
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throw RDF::Trine::Error::MethodInvocationError -text => $self->{error}; |
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} |
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my @graphs = ($self, $graph); |
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my ($ba, $nba) = $self->split_blank_statements; |
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my ($bb, $nbb) = $graph->split_blank_statements; |
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if (scalar(@$nba) != scalar(@$nbb)) { |
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my $nbac = scalar(@$nba); |
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my $nbbc = scalar(@$nbb); |
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$self->{error} = "count of non-blank statements didn't match ($nbac != $nbbc)"; |
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return 0; |
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} |
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my $bac = scalar(@$ba); |
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my $bbc = scalar(@$bb); |
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if ($bac != $bbc) { |
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$self->{error} = "count of blank statements didn't match ($bac != $bbc)"; |
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return 0; |
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} |
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for ($nba, $nbb) { |
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@$_ = sort map { $_->as_string } @$_; |
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} |
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foreach my $i (0 .. $#{ $nba }) { |
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unless ($nba->[$i] eq $nbb->[$i]) { |
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$self->{error} = "non-blank triples don't match: " . Dumper($nba->[$i], $nbb->[$i]); |
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return 0; |
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} |
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} |
164
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165
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return _find_mapping($self, $ba, $bb); |
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} |
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168
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=item C<< is_subgraph_of ( $graph ) >> |
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170
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Returns true if the invocant is a subgraph of $graph. (i.e. there exists an |
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injection of RDF statements from the invocant to $graph.) |
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173
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=cut |
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175
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sub is_subgraph_of { |
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1
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2512
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my $self = shift; |
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my $graph = shift; |
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undef($self->{error}); |
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return $self->_check_subgraph($graph) ? 1 : 0; |
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} |
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182
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=item C<< injection_map ( $graph ) >> |
183
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184
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If the invocant is a subgraph of $graph, returns a mapping of blank node |
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identifiers from the invocant graph to $graph as a hashref. Otherwise |
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returns false. The solution is not always unique; where there exist multiple |
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solutions, the solution returned is arbitrary. |
188
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189
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=cut |
190
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191
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sub injection_map { |
192
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0
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0
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1
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0
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my $self = shift; |
193
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0
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0
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my $graph = shift; |
194
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0
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0
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undef($self->{error}); |
195
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0
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0
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my $map = $self->_check_subgraph($graph); |
196
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0
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0
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0
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return $map if $map; |
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0
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0
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return; |
198
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} |
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200
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sub _check_subgraph { |
201
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15
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15
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29
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my $self = shift; |
202
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15
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25
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my $graph = shift; |
203
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15
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100
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100
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91
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unless (blessed($graph) and $graph->isa('RDF::Trine::Graph')) { |
204
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2
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22
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throw RDF::Trine::Error::MethodInvocationError -text => "RDF::Trine::Graph::equals must be called with a Graph argument"; |
205
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} |
206
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207
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13
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37
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my @graphs = ($self, $graph); |
208
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13
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39
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my ($ba, $nba) = $self->split_blank_statements; |
209
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13
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39
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my ($bb, $nbb) = $graph->split_blank_statements; |
210
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211
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13
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50
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60
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if (scalar(@$nba) > scalar(@$nbb)) { |
|
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50
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212
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0
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0
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$self->{error} = "invocant had too many blank node statements to be a subgraph of argument"; |
213
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0
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0
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return 0; |
214
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|
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} elsif (scalar(@$ba) > scalar(@$bb)) { |
215
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0
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0
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$self->{error} = "invocant had too many non-blank node statements to be a subgraph of argument"; |
216
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0
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0
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return 0; |
217
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} |
218
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219
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13
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34
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my %NBB = map { $_->as_string => 1 } @$nbb; |
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33
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90
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220
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221
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13
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38
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foreach my $st (@$nba) { |
222
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11
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100
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30
|
unless ($NBB{ $st->as_string }) { |
223
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1
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8
|
return 0; |
224
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} |
225
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} |
226
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227
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12
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39
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return _find_mapping($self, $ba, $bb); |
228
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} |
229
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230
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sub _find_mapping { |
231
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18
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18
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46
|
my ($self, $ba, $bb) = @_; |
232
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233
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18
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100
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57
|
if (scalar(@$ba) == 0) { |
234
|
2
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26
|
return {}; |
235
|
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|
} |
236
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237
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16
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31
|
my %blank_ids_a; |
238
|
16
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33
|
foreach my $st (@$ba) { |
239
|
26
|
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72
|
foreach my $n (grep { $_->isa('RDF::Trine::Node::Blank') } $st->nodes) { |
|
78
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239
|
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240
|
30
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77
|
$blank_ids_a{ $n->blank_identifier }++; |
241
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} |
242
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} |
243
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244
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16
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34
|
my %blank_ids_b; |
245
|
16
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|
|
36
|
foreach my $st (@$bb) { |
246
|
40
|
|
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|
|
113
|
foreach my $n (grep { $_->isa('RDF::Trine::Node::Blank') } $st->nodes) { |
|
120
|
|
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|
|
333
|
|
247
|
44
|
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|
|
109
|
$blank_ids_b{ $n->blank_identifier }++; |
248
|
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|
|
} |
249
|
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|
|
} |
250
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251
|
16
|
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|
|
33
|
my %bb_master = map { $_->as_string => 1 } @$bb; |
|
40
|
|
|
|
|
96
|
|
252
|
|
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253
|
16
|
|
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|
|
65
|
my @ka = keys %blank_ids_a; |
254
|
16
|
|
|
|
|
43
|
my @kb = keys %blank_ids_b; |
255
|
16
|
|
|
|
|
82
|
my $kbp = permutations( \@kb ); |
256
|
16
|
|
|
|
|
845
|
my $count = 0; |
257
|
16
|
|
|
|
|
55
|
MAPPING: while (my $mapping = $kbp->next) { |
258
|
28
|
|
|
|
|
418
|
my %mapping; |
259
|
28
|
|
|
|
|
74
|
@mapping{ @ka } = @$mapping; |
260
|
28
|
50
|
|
|
|
71
|
warn "trying mapping: " . Dumper(\%mapping) if ($debug); |
261
|
|
|
|
|
|
|
|
262
|
28
|
|
|
|
|
83
|
my %bb = %bb_master; |
263
|
28
|
|
|
|
|
76
|
foreach my $st (@$ba) { |
264
|
42
|
|
|
|
|
66
|
my @nodes; |
265
|
42
|
|
|
|
|
124
|
foreach my $method ($st->node_names) { |
266
|
126
|
|
|
|
|
325
|
my $n = $st->$method(); |
267
|
126
|
100
|
|
|
|
404
|
if ($n->isa('RDF::Trine::Node::Blank')) { |
268
|
53
|
|
|
|
|
130
|
my $id = $mapping{ $n->blank_identifier }; |
269
|
53
|
50
|
|
|
|
121
|
warn "mapping " . $n->blank_identifier . " to $id\n" if ($debug); |
270
|
53
|
|
|
|
|
143
|
push(@nodes, RDF::Trine::Node::Blank->new( $id )); |
271
|
|
|
|
|
|
|
} else { |
272
|
73
|
|
|
|
|
140
|
push(@nodes, $n); |
273
|
|
|
|
|
|
|
} |
274
|
|
|
|
|
|
|
} |
275
|
42
|
|
|
|
|
83
|
my $class = ref($st); |
276
|
42
|
|
|
|
|
118
|
my $mapped_st = $class->new( @nodes )->as_string; |
277
|
42
|
50
|
|
|
|
122
|
warn "checking for '$mapped_st' in " . Dumper(\%bb) if ($debug); |
278
|
42
|
100
|
|
|
|
106
|
if ($bb{ $mapped_st }) { |
279
|
26
|
|
|
|
|
82
|
delete $bb{ $mapped_st }; |
280
|
|
|
|
|
|
|
} else { |
281
|
16
|
|
|
|
|
91
|
next MAPPING; |
282
|
|
|
|
|
|
|
} |
283
|
|
|
|
|
|
|
} |
284
|
12
|
50
|
|
|
|
35
|
$self->{error} = "found mapping: " . Dumper(\%mapping) if ($debug); |
285
|
12
|
|
|
|
|
222
|
return \%mapping; |
286
|
|
|
|
|
|
|
} |
287
|
|
|
|
|
|
|
|
288
|
4
|
|
|
|
|
43
|
$self->{error} = "didn't find blank node mapping\n"; |
289
|
4
|
|
|
|
|
50
|
return 0; |
290
|
|
|
|
|
|
|
} |
291
|
|
|
|
|
|
|
|
292
|
|
|
|
|
|
|
=item C<< split_blank_statements >> |
293
|
|
|
|
|
|
|
|
294
|
|
|
|
|
|
|
Returns two array refs, containing triples with blank nodes and triples without |
295
|
|
|
|
|
|
|
any blank nodes, respectively. |
296
|
|
|
|
|
|
|
|
297
|
|
|
|
|
|
|
=cut |
298
|
|
|
|
|
|
|
|
299
|
|
|
|
|
|
|
sub split_blank_statements { |
300
|
44
|
|
|
44
|
1
|
78
|
my $self = shift; |
301
|
44
|
|
|
|
|
255
|
my $iter = $self->get_statements; |
302
|
44
|
|
|
|
|
98
|
my (@blanks, @nonblanks); |
303
|
44
|
|
|
|
|
149
|
while (my $st = $iter->next) { |
304
|
135
|
100
|
|
|
|
321
|
if ($st->has_blanks) { |
305
|
75
|
|
|
|
|
252
|
push(@blanks, $st); |
306
|
|
|
|
|
|
|
} else { |
307
|
60
|
|
|
|
|
185
|
push(@nonblanks, $st); |
308
|
|
|
|
|
|
|
} |
309
|
|
|
|
|
|
|
} |
310
|
44
|
|
|
|
|
396
|
return (\@blanks, \@nonblanks); |
311
|
|
|
|
|
|
|
} |
312
|
|
|
|
|
|
|
|
313
|
|
|
|
|
|
|
=item C<< get_statements >> |
314
|
|
|
|
|
|
|
|
315
|
|
|
|
|
|
|
Returns a RDF::Trine::Iterator::Graph object for the statements in this graph. |
316
|
|
|
|
|
|
|
|
317
|
|
|
|
|
|
|
=cut |
318
|
|
|
|
|
|
|
|
319
|
|
|
|
|
|
|
# The code below actually goes further now and makes RDF::Trine::Graph |
320
|
|
|
|
|
|
|
# into a subclass of RDF::Trine::Model via object delegation. This feature |
321
|
|
|
|
|
|
|
# is undocumented as it's not clear whether this is desirable or not. |
322
|
|
|
|
|
|
|
|
323
|
|
|
|
|
|
|
=begin private |
324
|
|
|
|
|
|
|
|
325
|
|
|
|
|
|
|
=item C<< isa >> |
326
|
|
|
|
|
|
|
|
327
|
|
|
|
|
|
|
=cut |
328
|
|
|
|
|
|
|
|
329
|
|
|
|
|
|
|
sub isa { |
330
|
46
|
|
|
46
|
1
|
6536
|
my ($proto, $queried) = @_; |
331
|
46
|
50
|
|
|
|
142
|
$proto = ref($proto) if ref($proto); |
332
|
46
|
|
33
|
|
|
281
|
return UNIVERSAL::isa($proto, $queried) || RDF::Trine::Model->isa($queried); |
333
|
|
|
|
|
|
|
} |
334
|
|
|
|
|
|
|
|
335
|
|
|
|
|
|
|
=item C<< can >> |
336
|
|
|
|
|
|
|
|
337
|
|
|
|
|
|
|
=cut |
338
|
|
|
|
|
|
|
|
339
|
|
|
|
|
|
|
sub can { |
340
|
1
|
|
|
1
|
1
|
16
|
my ($proto, $queried) = @_; |
341
|
1
|
50
|
|
|
|
5
|
$proto = ref($proto) if ref($proto); |
342
|
1
|
|
33
|
|
|
11
|
return UNIVERSAL::can($proto, $queried) || RDF::Trine::Model->can($queried); |
343
|
|
|
|
|
|
|
} |
344
|
|
|
|
|
|
|
|
345
|
|
|
|
|
|
|
sub AUTOLOAD { |
346
|
82
|
|
|
82
|
|
6982
|
my $self = shift; |
347
|
82
|
100
|
|
|
|
399
|
return if $AUTOLOAD =~ /::DESTROY$/; |
348
|
52
|
|
|
|
|
309
|
$AUTOLOAD =~ s/^(.+)::([^:]+)$/$2/; |
349
|
52
|
|
|
|
|
246
|
return $self->{model}->$AUTOLOAD(@_); |
350
|
|
|
|
|
|
|
} |
351
|
|
|
|
|
|
|
|
352
|
|
|
|
|
|
|
=end private |
353
|
|
|
|
|
|
|
|
354
|
|
|
|
|
|
|
=item C<< error >> |
355
|
|
|
|
|
|
|
|
356
|
|
|
|
|
|
|
Returns an error string explaining the last failed C<< equal >> call. |
357
|
|
|
|
|
|
|
|
358
|
|
|
|
|
|
|
=cut |
359
|
|
|
|
|
|
|
|
360
|
|
|
|
|
|
|
sub error { |
361
|
0
|
|
|
0
|
1
|
|
my $self = shift; |
362
|
0
|
|
|
|
|
|
return $self->{error}; |
363
|
|
|
|
|
|
|
} |
364
|
|
|
|
|
|
|
|
365
|
|
|
|
|
|
|
1; |
366
|
|
|
|
|
|
|
|
367
|
|
|
|
|
|
|
__END__ |
368
|
|
|
|
|
|
|
|
369
|
|
|
|
|
|
|
=back |
370
|
|
|
|
|
|
|
|
371
|
|
|
|
|
|
|
=head1 BUGS |
372
|
|
|
|
|
|
|
|
373
|
|
|
|
|
|
|
Please report any bugs or feature requests to through the GitHub web interface |
374
|
|
|
|
|
|
|
at L<https://github.com/kasei/perlrdf/issues>. |
375
|
|
|
|
|
|
|
|
376
|
|
|
|
|
|
|
=head1 AUTHOR |
377
|
|
|
|
|
|
|
|
378
|
|
|
|
|
|
|
Gregory Todd Williams C<< <gwilliams@cpan.org> >> |
379
|
|
|
|
|
|
|
|
380
|
|
|
|
|
|
|
=head1 COPYRIGHT |
381
|
|
|
|
|
|
|
|
382
|
|
|
|
|
|
|
Copyright (c) 2006-2012 Gregory Todd Williams. This |
383
|
|
|
|
|
|
|
program is free software; you can redistribute it and/or modify it under |
384
|
|
|
|
|
|
|
the same terms as Perl itself. |
385
|
|
|
|
|
|
|
|
386
|
|
|
|
|
|
|
=cut |