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#----------------------------------------------------------------- |
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# Proc::Async |
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# Author: Martin Senger |
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# For copyright and disclaimer se below. |
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# |
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# ABSTRACT: Running and monitoring processes asynchronously |
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# PODNAME: Proc::Async |
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#----------------------------------------------------------------- |
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478748
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use warnings; |
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35
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533
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use strict; |
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1004
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package Proc::Async; |
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our $VERSION = '0.2.0'; # VERSION |
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85
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use Carp; |
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982
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21341
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use File::Temp qw{ tempdir }; |
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555442
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1530
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18
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17
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196
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use File::Path qw{ remove_tree }; |
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36
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831
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103
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use File::Spec; |
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34
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352
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20
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100
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use File::Find; |
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975
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16240
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use File::Slurp; |
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237785
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2048
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9470
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use Proc::Async::Config; |
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464
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23
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16972
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use Proc::Daemon; |
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39291
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424
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24
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95
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use Config; |
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675
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74
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use constant STDOUT_FILE => '___proc_async_stdout___'; |
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21
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1100
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27
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84
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use constant STDERR_FILE => '___proc_async_stderr___'; |
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21
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645
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28
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70
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use constant CONFIG_FILE => '___proc_async_status.cfg'; |
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747
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29
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30
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use constant { |
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17
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1316
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STATUS_UNKNOWN => 'unknown', |
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STATUS_CREATED => 'created', |
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STATUS_RUNNING => 'running', |
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STATUS_COMPLETED => 'completed', |
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STATUS_TERM_BY_REQ => 'terminated by request', |
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STATUS_TERM_BY_ERR => 'terminated by error', |
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17
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70
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}; |
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38
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39
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# options used in the start() method |
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use constant { |
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17
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42523
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ALLOW_SHELL => 'ALLOW_SHELL', |
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TIMEOUT => 'TIMEOUT', |
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70
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}; |
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34
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44
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45
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# |
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46
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my $KNOWN_OPTIONS = { |
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ALLOW_SHELL() => 1, |
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48
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TIMEOUT() => 1, |
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49
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}; |
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51
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#----------------------------------------------------------------- |
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# Start an external program and return its ID. |
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53
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# starts ($args, [$options]) |
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54
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# starts (@args, [$options]) |
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55
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# $args ... an arrayref with the full command-line (including the |
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56
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# external program name) |
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57
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# @args ... an array with the full command-line (including the |
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58
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# external program name) |
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59
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# $options ... a hashref with additional options: |
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60
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# ALLOW_SHELL => 1 |
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61
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# TIMEOUT => number of second to spend |
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62
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#----------------------------------------------------------------- |
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63
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sub start { |
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64
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34
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34
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1
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18831
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my $class = shift; |
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65
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34
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50
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162
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croak ("START: Undefined external process.") |
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66
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unless @_ > 0; |
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67
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34
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253
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my ($args, $options) = _process_start_args (@_); |
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68
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34
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123
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_check_options ($options); |
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69
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70
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# create a job ID and a job directory |
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71
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34
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129
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my $jobid = _generate_job_id ($options); |
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72
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34
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18212
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my $dir = _id2dir ($jobid); |
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73
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74
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# create configuration file |
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75
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34
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122
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my ($cfg, $cfgfile) = _start_config ($jobid, $args, $options); |
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76
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77
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# demonize itself |
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78
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34
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1030
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my $daemon = Proc::Daemon->new( |
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79
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work_dir => $dir, |
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80
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child_STDOUT => File::Spec->catfile ($dir, STDOUT_FILE), |
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81
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child_STDERR => File::Spec->catfile ($dir, STDERR_FILE), |
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82
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); |
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83
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34
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866
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my $daemon_pid = $daemon->Init(); |
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84
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30
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100
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32971641
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if ($daemon_pid) { |
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85
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# this is a parent of the already detached daemon |
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86
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22
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5931
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return $jobid; |
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87
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} |
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88
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89
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# |
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90
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# --- this is the daemon (child) branch |
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91
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# |
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92
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93
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# fork and start an external process |
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94
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8
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12637
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my $pid = fork(); |
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95
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96
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8
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100
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887
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if ($pid) { |
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50
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97
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# |
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98
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# --- this branch is executed in the parent (wrapper) process; |
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99
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# |
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100
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101
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# update the configuration file |
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102
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4
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311
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$cfg->param ("job.pid", $pid); |
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103
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4
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1556
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update_status ($cfg, |
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104
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STATUS_RUNNING, |
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105
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"started at " . scalar localtime()); |
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106
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4
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57
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$cfg->param ("job.started", time()); |
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107
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4
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69
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$cfg->save(); |
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108
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109
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# wait for the child process to finish |
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110
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# TBD: if TIMEOUT then use alarm and non-blocking waitpid |
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111
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3
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2291318
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my $reaped_pid = waitpid ($pid, 0); |
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112
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3
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124
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my $reaped_status = $?; |
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113
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114
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3
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50
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69
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if ($reaped_status == -1) { |
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50
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115
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0
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0
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update_status ($cfg, |
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116
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STATUS_UNKNOWN, |
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117
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"No such child process"); # can happen? |
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118
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119
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} elsif ($reaped_status & 127) { |
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120
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0
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0
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0
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update_status ($cfg, |
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121
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STATUS_TERM_BY_REQ, |
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122
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"terminated by signal " . ($reaped_status & 127), |
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123
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(($reaped_status & 128) ? "with" : "without") . " coredump", |
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124
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"terminated at " . scalar localtime(), |
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125
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_elapsed_time ($cfg)); |
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126
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127
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} else { |
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128
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3
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18
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my $exit_code = $reaped_status >> 8; |
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129
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3
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100
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14
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if ($exit_code == 0) { |
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130
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1
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81
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update_status ($cfg, |
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131
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STATUS_COMPLETED, |
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132
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"exit code $exit_code", |
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133
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"completed at " . scalar localtime(), |
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134
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_elapsed_time ($cfg)); |
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135
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} else { |
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136
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2
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157
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update_status ($cfg, |
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137
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STATUS_TERM_BY_ERR, |
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138
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"exit code $exit_code", |
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139
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"completed at " . scalar localtime(), |
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140
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_elapsed_time ($cfg)); |
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141
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} |
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142
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} |
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143
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3
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25
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$cfg->save(); |
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144
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145
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# the wrapper of the daemon finishes; do not return anything |
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146
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3
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1105
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exit (0); |
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147
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148
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} elsif ($pid == 0) { |
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149
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# |
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150
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# --- this branch is executed in the just started child process |
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151
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# |
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152
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153
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# replace itself by an external process |
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154
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4
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100
|
100
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384
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if ($options->{ ALLOW_SHELL() } or @$args > 1) { |
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155
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# this allows to execute things such as: 'date | wc' |
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156
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2
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0
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0
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exec (@$args) or |
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157
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croak "Cannot execute the external process: " . _join_args ($args) . "\n"; |
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158
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} else { |
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159
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# this is always save against interpreting $args by a shell |
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160
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2
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0
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13
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exec { $args->[0] } @$args or |
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2
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0
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161
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croak "Cannot execute (using an indirect object) the external process: " . _join_args ($args) . "\n"; |
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162
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} |
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163
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164
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} else { |
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165
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# |
|
166
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# --- this branch is executed only when there is an error in the forking |
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167
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# |
|
168
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0
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0
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croak "Cannot start an external process: " . _join_args ($args) . " - $!\n"; |
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169
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} |
|
170
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} |
|
171
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|
172
|
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|
#----------------------------------------------------------------- |
|
173
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|
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|
|
# Pretty print of the list of arguments (given as an arrayref). |
|
174
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|
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#----------------------------------------------------------------- |
|
175
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|
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sub _join_args { |
|
176
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0
|
|
|
0
|
|
0
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my $args = shift; |
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177
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0
|
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0
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return join (" ", map {"'$_'"} @$args); |
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0
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0
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178
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} |
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179
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180
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#----------------------------------------------------------------- |
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181
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# Return a pretty-formatted elapsed time of the just finished job. |
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182
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#----------------------------------------------------------------- |
|
183
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sub _elapsed_time { |
|
184
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3
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|
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3
|
|
11
|
my $cfg = shift; |
|
185
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3
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38
|
my $started = $cfg->param ("job.started"); |
|
186
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3
|
50
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|
20
|
return "elapsed time unknown" unless $started; |
|
187
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3
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14
|
my $elapsed = time() - $started; |
|
188
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3
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32
|
return "elapsed time $elapsed seconds"; |
|
189
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} |
|
190
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191
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#----------------------------------------------------------------- |
|
192
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# Extract arguments for the start() method and return: |
|
193
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|
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# ( [args], {options} ) |
|
194
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# ----------------------------------------------------------------- |
|
195
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|
|
sub _process_start_args { |
|
196
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38
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|
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38
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|
8012
|
my @args; |
|
197
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|
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my $options; |
|
198
|
38
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100
|
66
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379
|
if (ref $_[0] and ref $_[0] eq 'ARRAY') { |
|
199
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# arguments for external process are given as an arrayref... |
|
200
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2
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3
|
@args = @{ shift() }; |
|
|
2
|
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7
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|
201
|
2
|
100
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66
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12
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$options = (ref $_[0] and ref $_[0] eq 'HASH') ? shift @_ : {}; |
|
202
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} else { |
|
203
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# arguments for external process are given as an array... |
|
204
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36
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100
|
66
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|
300
|
$options = (ref $_[-1] and ref $_[-1] eq 'HASH') ? pop @_ : {}; |
|
205
|
36
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|
459
|
@args = @_; |
|
206
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|
|
} |
|
207
|
38
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|
206
|
return (\@args, $options); |
|
208
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} |
|
209
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210
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|
#----------------------------------------------------------------- |
|
211
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|
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# Update status and its details (just in memory - in the given $cfg). |
|
212
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|
#----------------------------------------------------------------- |
|
213
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|
|
sub update_status { |
|
214
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7
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|
|
7
|
0
|
99
|
my ($cfg, $status, @details) = @_; |
|
215
|
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|
216
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|
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|
|
# remove the existing status and its details |
|
217
|
7
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|
89
|
$cfg->remove ("job.status"); |
|
218
|
7
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|
52
|
$cfg->remove ("job.status.detail"); |
|
219
|
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|
220
|
|
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|
|
|
|
# put updated values |
|
221
|
7
|
|
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|
|
34
|
$cfg->param ("job.status", $status); |
|
222
|
7
|
|
|
|
|
64
|
foreach my $detail (@details) { |
|
223
|
13
|
|
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|
|
44
|
$cfg->param ("job.status.detail", $detail); |
|
224
|
|
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|
|
} |
|
225
|
|
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|
226
|
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|
|
|
# note the finished time if the new status indicates the termination |
|
227
|
7
|
100
|
66
|
|
|
293
|
if ($status eq STATUS_COMPLETED or |
|
|
|
|
100
|
|
|
|
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|
228
|
|
|
|
|
|
|
$status eq STATUS_TERM_BY_REQ or |
|
229
|
|
|
|
|
|
|
$status eq STATUS_TERM_BY_ERR) { |
|
230
|
3
|
|
|
|
|
15
|
$cfg->param ("job.ended", time()); |
|
231
|
|
|
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|
|
} |
|
232
|
|
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|
|
} |
|
233
|
|
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|
234
|
|
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|
|
|
|
# ----------------------------------------------------------------- |
|
235
|
|
|
|
|
|
|
# Return status of the given job (given by $jobid). In array context, |
|
236
|
|
|
|
|
|
|
# it also returns (optional) details of the status. |
|
237
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
238
|
|
|
|
|
|
|
sub status { |
|
239
|
74
|
|
|
74
|
1
|
229
|
my ($class, $jobid) = @_; |
|
240
|
74
|
50
|
|
|
|
657
|
return unless defined wantarray; # don't bother doing more |
|
241
|
74
|
|
|
|
|
442
|
my $dir = _id2dir ($jobid); |
|
242
|
74
|
|
|
|
|
523
|
my ($cfg, $cfgfile) = $class->get_configuration ($dir); |
|
243
|
74
|
|
50
|
|
|
267
|
my $status = $cfg->param ('job.status') || STATUS_UNKNOWN; |
|
244
|
74
|
100
|
|
|
|
261
|
my @details = ($cfg->param ('job.status.detail') ? $cfg->param ('job.status.detail') : ()); |
|
245
|
74
|
100
|
|
|
|
924
|
return wantarray ? ($status, @details) : $status; |
|
246
|
|
|
|
|
|
|
} |
|
247
|
|
|
|
|
|
|
|
|
248
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
249
|
|
|
|
|
|
|
# Return true if the status of the job indicates that the external |
|
250
|
|
|
|
|
|
|
# program had finished (well or badly). |
|
251
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
252
|
|
|
|
|
|
|
sub is_finished { |
|
253
|
59
|
|
|
59
|
1
|
47009936
|
my ($class, $jobid) = @_; |
|
254
|
59
|
|
|
|
|
446
|
my $status = $class->status ($jobid); |
|
255
|
|
|
|
|
|
|
return |
|
256
|
59
|
|
100
|
|
|
817
|
$status eq STATUS_COMPLETED || |
|
257
|
|
|
|
|
|
|
$status eq STATUS_TERM_BY_REQ || |
|
258
|
|
|
|
|
|
|
$status eq STATUS_TERM_BY_ERR; |
|
259
|
|
|
|
|
|
|
} |
|
260
|
|
|
|
|
|
|
|
|
261
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
262
|
|
|
|
|
|
|
# Return the name of the working directory for the given $jobid. |
|
263
|
|
|
|
|
|
|
# Or undef if such working directory does not exist. |
|
264
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
265
|
|
|
|
|
|
|
sub working_dir { |
|
266
|
19
|
|
|
19
|
1
|
14666
|
my ($class, $jobid) = @_; |
|
267
|
19
|
|
|
|
|
360
|
my $dir = _id2dir ($jobid); |
|
268
|
19
|
100
|
66
|
|
|
1579
|
return -e $dir && -d $dir ? $dir : undef; |
|
269
|
|
|
|
|
|
|
} |
|
270
|
|
|
|
|
|
|
|
|
271
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
272
|
|
|
|
|
|
|
# Return a list of (some) filenames in a job directory that is |
|
273
|
|
|
|
|
|
|
# specified by the given $jobid. The filenames are relative to this |
|
274
|
|
|
|
|
|
|
# job directory, and they may include subdirectories if there are |
|
275
|
|
|
|
|
|
|
# subdirectories within this job directory. The files with the special |
|
276
|
|
|
|
|
|
|
# names (see the constants STDOUT_FILE, STDERR_FILE, CONFIG_FILE) are |
|
277
|
|
|
|
|
|
|
# ignored. If there is an empty directory, it is also ignored. |
|
278
|
|
|
|
|
|
|
# |
|
279
|
|
|
|
|
|
|
# For example, if the contents of a job directory is: |
|
280
|
|
|
|
|
|
|
# ___proc_async_stdout___ |
|
281
|
|
|
|
|
|
|
# ___proc_async_stderr___ |
|
282
|
|
|
|
|
|
|
# ___proc_async_status.cfg |
|
283
|
|
|
|
|
|
|
# a.file |
|
284
|
|
|
|
|
|
|
# a.dir/ |
|
285
|
|
|
|
|
|
|
# file1 |
|
286
|
|
|
|
|
|
|
# file2 |
|
287
|
|
|
|
|
|
|
# b.dir/ |
|
288
|
|
|
|
|
|
|
# file3 |
|
289
|
|
|
|
|
|
|
# empty.dir/ |
|
290
|
|
|
|
|
|
|
# |
|
291
|
|
|
|
|
|
|
# then the returned list will look like this: |
|
292
|
|
|
|
|
|
|
# ('a.file', |
|
293
|
|
|
|
|
|
|
# 'a.dir/file1', |
|
294
|
|
|
|
|
|
|
# 'a.dir/file2', |
|
295
|
|
|
|
|
|
|
# 'b.dir/file3') |
|
296
|
|
|
|
|
|
|
# |
|
297
|
|
|
|
|
|
|
# It can croak if the $jobid is empty. If it does not represent an |
|
298
|
|
|
|
|
|
|
# existing (and readable) directory, it returns an empty list (without |
|
299
|
|
|
|
|
|
|
# croaking). |
|
300
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
301
|
|
|
|
|
|
|
sub result_list { |
|
302
|
21
|
|
|
21
|
1
|
49
|
my ($class, $jobid) = @_; |
|
303
|
21
|
|
|
|
|
42
|
my $dir = _id2dir ($jobid); |
|
304
|
21
|
50
|
|
|
|
483
|
return () unless -e $dir; |
|
305
|
|
|
|
|
|
|
|
|
306
|
21
|
|
|
|
|
56
|
my @files = (); |
|
307
|
|
|
|
|
|
|
find ( |
|
308
|
|
|
|
|
|
|
sub { |
|
309
|
210
|
|
|
210
|
|
329
|
my $regex = quotemeta ($dir); |
|
310
|
210
|
100
|
100
|
|
|
8876
|
unless (m{^\.\.?$} || -d) { |
|
311
|
105
|
|
|
|
|
161
|
my $file = $File::Find::name; |
|
312
|
105
|
|
|
|
|
637
|
$file =~ s{^$regex[/\\]?}{}; |
|
313
|
105
|
100
|
100
|
|
|
2163
|
push (@files, $file) |
|
|
|
|
100
|
|
|
|
|
|
314
|
|
|
|
|
|
|
unless |
|
315
|
|
|
|
|
|
|
$file eq STDOUT_FILE or |
|
316
|
|
|
|
|
|
|
$file eq STDERR_FILE or |
|
317
|
|
|
|
|
|
|
$file eq CONFIG_FILE; |
|
318
|
|
|
|
|
|
|
} |
|
319
|
|
|
|
|
|
|
}, |
|
320
|
21
|
|
|
|
|
2548
|
$dir); |
|
321
|
21
|
|
|
|
|
175
|
return @files; |
|
322
|
|
|
|
|
|
|
} |
|
323
|
|
|
|
|
|
|
|
|
324
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
325
|
|
|
|
|
|
|
# Return the content of the given $file from the job given by |
|
326
|
|
|
|
|
|
|
# $jobid. The $file is a relative filename; must be one of those |
|
327
|
|
|
|
|
|
|
# returned by method result_list(). |
|
328
|
|
|
|
|
|
|
# |
|
329
|
|
|
|
|
|
|
# Return undef if the $file does not exist (or if it does not exist in |
|
330
|
|
|
|
|
|
|
# the list returned by result_list(). |
|
331
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
332
|
|
|
|
|
|
|
sub result { |
|
333
|
14
|
|
|
14
|
1
|
13678
|
my ($class, $jobid, $file) = @_; |
|
334
|
14
|
|
|
|
|
63
|
my @allowed_files = $class->result_list ($jobid); |
|
335
|
14
|
|
|
|
|
35
|
my $dir = _id2dir ($jobid); |
|
336
|
14
|
|
|
|
|
21
|
my $is_allowed = exists { map {$_ => 1} @allowed_files }->{$file}; |
|
|
28
|
|
|
|
|
112
|
|
|
337
|
14
|
50
|
|
|
|
56
|
return unless $is_allowed; |
|
338
|
14
|
|
|
|
|
161
|
return read_file (File::Spec->catfile ($dir, $file)); |
|
339
|
|
|
|
|
|
|
} |
|
340
|
|
|
|
|
|
|
|
|
341
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
342
|
|
|
|
|
|
|
# Return the content of the STDOUT from the job given by $jobid. It |
|
343
|
|
|
|
|
|
|
# may be an empty string if the job did not produce any STDOUT, or if |
|
344
|
|
|
|
|
|
|
# the job does not exist anymore. |
|
345
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
346
|
|
|
|
|
|
|
sub stdout { |
|
347
|
11
|
|
|
11
|
1
|
141
|
my ($class, $jobid) = @_; |
|
348
|
11
|
|
|
|
|
29
|
my $dir = _id2dir ($jobid); |
|
349
|
11
|
|
|
|
|
120
|
my $file = File::Spec->catfile ($dir, STDOUT_FILE); |
|
350
|
11
|
|
|
|
|
43
|
my $content = ""; |
|
351
|
11
|
|
|
|
|
55
|
eval { |
|
352
|
11
|
|
|
|
|
185
|
$content = read_file ($file); |
|
353
|
|
|
|
|
|
|
}; |
|
354
|
11
|
|
|
|
|
1479
|
return $content; |
|
355
|
|
|
|
|
|
|
} |
|
356
|
|
|
|
|
|
|
|
|
357
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
358
|
|
|
|
|
|
|
# Return the content of the STDERR from the job given by $jobid. It |
|
359
|
|
|
|
|
|
|
# may be an empty string if the job did not produce any STDERR, or if |
|
360
|
|
|
|
|
|
|
# the job does not exist anymore. |
|
361
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
362
|
|
|
|
|
|
|
sub stderr { |
|
363
|
7
|
|
|
7
|
1
|
21
|
my ($class, $jobid) = @_; |
|
364
|
7
|
|
|
|
|
21
|
my $dir = _id2dir ($jobid); |
|
365
|
7
|
|
|
|
|
63
|
my $file = File::Spec->catfile ($dir, STDERR_FILE); |
|
366
|
7
|
|
|
|
|
21
|
my $content = ""; |
|
367
|
7
|
|
|
|
|
14
|
eval { |
|
368
|
7
|
|
|
|
|
56
|
$content = read_file ($file); |
|
369
|
|
|
|
|
|
|
}; |
|
370
|
7
|
|
|
|
|
539
|
return $content; |
|
371
|
|
|
|
|
|
|
} |
|
372
|
|
|
|
|
|
|
|
|
373
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
374
|
|
|
|
|
|
|
# Remove files belonging to the given job, including its directory. |
|
375
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
376
|
|
|
|
|
|
|
sub clean { |
|
377
|
23
|
|
|
23
|
1
|
14369
|
my ($class, $jobid) = @_; |
|
378
|
23
|
|
|
|
|
194
|
my $dir = _id2dir ($jobid); |
|
379
|
23
|
|
|
|
|
24105
|
my $file_count = remove_tree ($dir); #, {verbose => 1}); |
|
380
|
23
|
|
|
|
|
345
|
return $file_count; |
|
381
|
|
|
|
|
|
|
} |
|
382
|
|
|
|
|
|
|
|
|
383
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
384
|
|
|
|
|
|
|
# Send a signal to the given job. $signal is a positive integer |
|
385
|
|
|
|
|
|
|
# between 1 and 64. Default is 9 which means the KILL signal. Return |
|
386
|
|
|
|
|
|
|
# true on success, zero on failure (no such job, no such process). It |
|
387
|
|
|
|
|
|
|
# may also croak if the $jobid is invalid or missing, at all, or if |
|
388
|
|
|
|
|
|
|
# the $signal is invalid. |
|
389
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
390
|
|
|
|
|
|
|
sub signal { |
|
391
|
0
|
|
|
0
|
1
|
0
|
my ($class, $jobid, $signal) = @_; |
|
392
|
0
|
|
|
|
|
0
|
my $dir = _id2dir ($jobid); |
|
393
|
0
|
0
|
|
|
|
0
|
$signal = 9 unless $signal; # Note that $signal zero is also changed to 9 |
|
394
|
0
|
0
|
|
|
|
0
|
croak "Bad signal: $signal.\n" |
|
395
|
|
|
|
|
|
|
unless $signal =~ m{^[+]?\d+$}; |
|
396
|
0
|
|
|
|
|
0
|
my ($cfg, $cfgfile) = $class->get_configuration ($dir); |
|
397
|
0
|
|
|
|
|
0
|
my $pid = $cfg->param ('job.pid'); |
|
398
|
0
|
0
|
|
|
|
0
|
return 0 unless $pid; |
|
399
|
0
|
|
|
|
|
0
|
return kill $signal, $pid; |
|
400
|
|
|
|
|
|
|
} |
|
401
|
|
|
|
|
|
|
|
|
402
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
403
|
|
|
|
|
|
|
# Check given $options (a hashref), some may be removed. |
|
404
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
405
|
|
|
|
|
|
|
sub _check_options { |
|
406
|
34
|
|
|
34
|
|
41
|
my $options = shift; |
|
407
|
|
|
|
|
|
|
|
|
408
|
|
|
|
|
|
|
# TIMEOUT may not be used on some architectures; must be a |
|
409
|
|
|
|
|
|
|
# positive integer |
|
410
|
34
|
50
|
|
|
|
122
|
if (exists $options->{TIMEOUT}) { |
|
411
|
0
|
|
|
|
|
0
|
my $timeout = $options->{TIMEOUT}; |
|
412
|
0
|
0
|
|
|
|
0
|
if (_is_int ($timeout)) { |
|
413
|
0
|
0
|
|
|
|
0
|
if ($timeout == 0) { |
|
|
|
0
|
|
|
|
|
|
|
414
|
0
|
|
|
|
|
0
|
delete $options->{TIMEOUT}; |
|
415
|
|
|
|
|
|
|
} elsif ($timeout < 0) { |
|
416
|
0
|
|
|
|
|
0
|
delete $options->{TIMEOUT}; |
|
417
|
0
|
|
|
|
|
0
|
carp "Warning: Option TIMEOUT is negative. Ignored.\n"; |
|
418
|
|
|
|
|
|
|
} |
|
419
|
|
|
|
|
|
|
} else { |
|
420
|
0
|
|
|
|
|
0
|
delete $options->{TIMEOUT}; |
|
421
|
0
|
|
|
|
|
0
|
carp "Warning: Option TIMEOUT is not a number (found '$options->{TIMEOUT}'). Ignored.\n"; |
|
422
|
|
|
|
|
|
|
} |
|
423
|
0
|
0
|
|
|
|
0
|
if (exists $options->{TIMEOUT}) { |
|
424
|
0
|
|
0
|
|
|
0
|
my $has_nonblocking = $Config{d_waitpid} eq "define" || $Config{d_wait4} eq "define"; |
|
425
|
0
|
0
|
|
|
|
0
|
unless ($has_nonblocking) { |
|
426
|
0
|
|
|
|
|
0
|
delete $options->{TIMEOUT}; |
|
427
|
0
|
|
|
|
|
0
|
carp "Warning: Option TIMEOUT cannot be used on this system. Ignored.\n"; |
|
428
|
|
|
|
|
|
|
} |
|
429
|
|
|
|
|
|
|
} |
|
430
|
|
|
|
|
|
|
} |
|
431
|
|
|
|
|
|
|
|
|
432
|
|
|
|
|
|
|
# check for unknown options |
|
433
|
34
|
|
|
|
|
303
|
foreach my $key (sort keys %$options) { |
|
434
|
7
|
50
|
|
|
|
49
|
carp "Warning: Unknown option '$key'. Ignored.\n" |
|
435
|
|
|
|
|
|
|
unless exists $KNOWN_OPTIONS->{$key}; |
|
436
|
|
|
|
|
|
|
} |
|
437
|
|
|
|
|
|
|
|
|
438
|
|
|
|
|
|
|
} |
|
439
|
|
|
|
|
|
|
|
|
440
|
|
|
|
|
|
|
sub _is_int { |
|
441
|
0
|
|
|
0
|
|
0
|
my ($str) = @_; |
|
442
|
0
|
0
|
|
|
|
0
|
return unless defined $str; |
|
443
|
0
|
0
|
|
|
|
0
|
return $str =~ /^[+-]?\d+$/ ? 1 : undef; |
|
444
|
|
|
|
|
|
|
} |
|
445
|
|
|
|
|
|
|
|
|
446
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
447
|
|
|
|
|
|
|
# Create a configuration instance and load it from the configuration |
|
448
|
|
|
|
|
|
|
# file (if exists) for the given job. Return ($cfg, $cfgfile). |
|
449
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
450
|
|
|
|
|
|
|
sub get_configuration { |
|
451
|
110
|
|
|
110
|
1
|
1073
|
my ($class, $jobid) = @_; |
|
452
|
110
|
|
|
|
|
276
|
my $dir = _id2dir ($jobid); |
|
453
|
110
|
|
|
|
|
1717
|
my $cfgfile = File::Spec->catfile ($dir, CONFIG_FILE); |
|
454
|
110
|
|
|
|
|
1680
|
my $cfg = Proc::Async::Config->new ($cfgfile); |
|
455
|
110
|
|
|
|
|
535
|
return ($cfg, $cfgfile); |
|
456
|
|
|
|
|
|
|
} |
|
457
|
|
|
|
|
|
|
|
|
458
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
459
|
|
|
|
|
|
|
# Create and fill the configuration file. Return the filename and a |
|
460
|
|
|
|
|
|
|
# configuration instance. |
|
461
|
|
|
|
|
|
|
# ----------------------------------------------------------------- |
|
462
|
|
|
|
|
|
|
sub _start_config { |
|
463
|
35
|
|
|
35
|
|
639
|
my ($jobid, $args, $options) = @_; |
|
464
|
|
|
|
|
|
|
|
|
465
|
|
|
|
|
|
|
# create configuration file |
|
466
|
35
|
|
|
|
|
142
|
my ($cfg, $cfgfile) = Proc::Async->get_configuration ($jobid); |
|
467
|
|
|
|
|
|
|
|
|
468
|
|
|
|
|
|
|
# ...and fill it |
|
469
|
35
|
|
|
|
|
218
|
$cfg->param ("job.id", $jobid); |
|
470
|
35
|
|
|
|
|
200
|
foreach my $arg (@$args) { |
|
471
|
157
|
|
|
|
|
414
|
$cfg->param ("job.arg", $arg); |
|
472
|
|
|
|
|
|
|
} |
|
473
|
35
|
|
|
|
|
153
|
foreach my $key (sort keys %$options) { |
|
474
|
9
|
|
|
|
|
59
|
$cfg->param ("option.$key", $options->{$key}); |
|
475
|
|
|
|
|
|
|
} |
|
476
|
35
|
|
|
|
|
267
|
$cfg->param ("job.status", STATUS_CREATED); |
|
477
|
|
|
|
|
|
|
|
|
478
|
35
|
|
|
|
|
289
|
$cfg->save(); |
|
479
|
35
|
|
|
|
|
122
|
return ($cfg, $cfgfile); |
|
480
|
|
|
|
|
|
|
} |
|
481
|
|
|
|
|
|
|
|
|
482
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
483
|
|
|
|
|
|
|
# Create and return a unique ID. |
|
484
|
|
|
|
|
|
|
#### (the ID may be influenced by some of the $options). |
|
485
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
486
|
|
|
|
|
|
|
sub _generate_job_id { |
|
487
|
|
|
|
|
|
|
# my $options = shift; # an optional hashref |
|
488
|
|
|
|
|
|
|
# if ($options and exists $options->{DIR}) { |
|
489
|
|
|
|
|
|
|
# return tempdir ( CLEANUP => 0, DIR => $options->{DIR} ); |
|
490
|
|
|
|
|
|
|
# } else { |
|
491
|
|
|
|
|
|
|
# return tempdir ( CLEANUP => 0 ); |
|
492
|
|
|
|
|
|
|
# } |
|
493
|
36
|
|
|
36
|
|
4214
|
return tempdir (CLEANUP => 0, DIR => File::Spec->tmpdir); |
|
494
|
|
|
|
|
|
|
} |
|
495
|
|
|
|
|
|
|
|
|
496
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
497
|
|
|
|
|
|
|
# Return a name of a directory asociated with the given job ID; in |
|
498
|
|
|
|
|
|
|
# this implementation, it returns the same value as the job ID; it |
|
499
|
|
|
|
|
|
|
# croaks if called without a parameter OR if $jobid points to a |
|
500
|
|
|
|
|
|
|
# strange (not expected) place. |
|
501
|
|
|
|
|
|
|
#----------------------------------------------------------------- |
|
502
|
|
|
|
|
|
|
sub _id2dir { |
|
503
|
314
|
|
|
314
|
|
1638
|
my $jobid = shift; |
|
504
|
314
|
50
|
|
|
|
911
|
croak ("Missing job ID.\n") |
|
505
|
|
|
|
|
|
|
unless $jobid; |
|
506
|
|
|
|
|
|
|
|
|
507
|
|
|
|
|
|
|
# does the $jobid start in the temporary directory? |
|
508
|
314
|
|
|
|
|
6473
|
my $tmpdir = File::Spec->tmpdir; # this must be the same as used in _generate_job_id |
|
509
|
314
|
50
|
|
|
|
3178
|
croak ("Invalid job ID '$jobid'.\n") |
|
510
|
|
|
|
|
|
|
unless $jobid =~ m{^\Q$tmpdir\E[/\\]}; |
|
511
|
|
|
|
|
|
|
|
|
512
|
314
|
|
|
|
|
948
|
return $jobid; |
|
513
|
|
|
|
|
|
|
} |
|
514
|
|
|
|
|
|
|
|
|
515
|
|
|
|
|
|
|
1; |
|
516
|
|
|
|
|
|
|
|
|
517
|
|
|
|
|
|
|
|
|
518
|
|
|
|
|
|
|
|
|
519
|
|
|
|
|
|
|
=pod |
|
520
|
|
|
|
|
|
|
|
|
521
|
|
|
|
|
|
|
=head1 NAME |
|
522
|
|
|
|
|
|
|
|
|
523
|
|
|
|
|
|
|
Proc::Async - Running and monitoring processes asynchronously |
|
524
|
|
|
|
|
|
|
|
|
525
|
|
|
|
|
|
|
=head1 VERSION |
|
526
|
|
|
|
|
|
|
|
|
527
|
|
|
|
|
|
|
version 0.2.0 |
|
528
|
|
|
|
|
|
|
|
|
529
|
|
|
|
|
|
|
=head1 SYNOPSIS |
|
530
|
|
|
|
|
|
|
|
|
531
|
|
|
|
|
|
|
use Proc::Async; |
|
532
|
|
|
|
|
|
|
|
|
533
|
|
|
|
|
|
|
# start an external program |
|
534
|
|
|
|
|
|
|
$jobid = Proc::Async->start ('blastx', '-query', '/data/my.seq', '-out', 'blastout'); |
|
535
|
|
|
|
|
|
|
|
|
536
|
|
|
|
|
|
|
# later, usually from another program (or in another time), |
|
537
|
|
|
|
|
|
|
# investigate what is the external program doing |
|
538
|
|
|
|
|
|
|
if (Proc::Async->is_finished ($jobid)) { |
|
539
|
|
|
|
|
|
|
@files = Proc::Async->result_list ($jobid); |
|
540
|
|
|
|
|
|
|
foreach my $file (@files) { |
|
541
|
|
|
|
|
|
|
print Proc::Async->result ($file); |
|
542
|
|
|
|
|
|
|
} |
|
543
|
|
|
|
|
|
|
print Proc::Async->stdout(); |
|
544
|
|
|
|
|
|
|
print Proc::Async->stderr(); |
|
545
|
|
|
|
|
|
|
} |
|
546
|
|
|
|
|
|
|
|
|
547
|
|
|
|
|
|
|
$status = Proc::Async->status ($jobid); |
|
548
|
|
|
|
|
|
|
|
|
549
|
|
|
|
|
|
|
=head1 DESCRIPTION |
|
550
|
|
|
|
|
|
|
|
|
551
|
|
|
|
|
|
|
This module can execute an external process, monitor its state, get |
|
552
|
|
|
|
|
|
|
its results and, if needed, kill it prematurely and remove its |
|
553
|
|
|
|
|
|
|
results. There are, of course, many modules that cover similar |
|
554
|
|
|
|
|
|
|
functionality, including functions directly built-in in Perl. So why |
|
555
|
|
|
|
|
|
|
to have this module, at all? The main feature is hidden in the second |
|
556
|
|
|
|
|
|
|
part of the module name, the word B. The individual methods (to |
|
557
|
|
|
|
|
|
|
execute, to monitor, to get results, etc.) can be called (almost) |
|
558
|
|
|
|
|
|
|
independently from each other, from separate Perl programs, and there |
|
559
|
|
|
|
|
|
|
may be any delay between them. |
|
560
|
|
|
|
|
|
|
|
|
561
|
|
|
|
|
|
|
It focuses mainly on invoking external programs from the CGI scripts |
|
562
|
|
|
|
|
|
|
in the web applications. Here is a typical scenario: Your CGI script |
|
563
|
|
|
|
|
|
|
starts an external program which may take some time before it |
|
564
|
|
|
|
|
|
|
finishes. The CGI scripts does not wait for it and returns back, |
|
565
|
|
|
|
|
|
|
remembering (e.g. in a form of a hidden variable in the returned HTML |
|
566
|
|
|
|
|
|
|
page) the only thing, the ID of the just started job (a |
|
567
|
|
|
|
|
|
|
C). Meanwhile, the invoked external program has been |
|
568
|
|
|
|
|
|
|
I (it became a daemon process, a process nobody waits |
|
569
|
|
|
|
|
|
|
for). Now you have another CGI script that can use the remembered |
|
570
|
|
|
|
|
|
|
C to monitor status and get results of the previously started |
|
571
|
|
|
|
|
|
|
process. |
|
572
|
|
|
|
|
|
|
|
|
573
|
|
|
|
|
|
|
The core functionality, the demonization, is done by the module |
|
574
|
|
|
|
|
|
|
C. If you plan to write a single program that starts a |
|
575
|
|
|
|
|
|
|
daemon process and waits for it, then you may need just the |
|
576
|
|
|
|
|
|
|
C module. But if you wish to split individual calls into |
|
577
|
|
|
|
|
|
|
two or more programs then the C may be your choice. |
|
578
|
|
|
|
|
|
|
|
|
579
|
|
|
|
|
|
|
=head1 METHODS |
|
580
|
|
|
|
|
|
|
|
|
581
|
|
|
|
|
|
|
All methods of this module are I methods, there is no C |
|
582
|
|
|
|
|
|
|
instance constructor. It does not make much sense to have an instance |
|
583
|
|
|
|
|
|
|
if you wish to use it from a separate program, does it? The |
|
584
|
|
|
|
|
|
|
communication between individual calls is done in a temporary |
|
585
|
|
|
|
|
|
|
directory (as it is explained later in this documentation but it is |
|
586
|
|
|
|
|
|
|
not important for the module usage). |
|
587
|
|
|
|
|
|
|
|
|
588
|
|
|
|
|
|
|
=head2 start($args [,$options]) I start(@args, [$options]) |
|
589
|
|
|
|
|
|
|
|
|
590
|
|
|
|
|
|
|
This method starts an external program, makes a daemon process from |
|
591
|
|
|
|
|
|
|
it, does not wait for its completion and returns a token, a job |
|
592
|
|
|
|
|
|
|
ID. This token will be used as an argument in all other |
|
593
|
|
|
|
|
|
|
methods. Therefore, there is no sense to call any of the other |
|
594
|
|
|
|
|
|
|
methods without calling the C first. |
|
595
|
|
|
|
|
|
|
|
|
596
|
|
|
|
|
|
|
C<$args> is an arrayref with the full command-line (including the |
|
597
|
|
|
|
|
|
|
external program name). Or, it can be given as a normal list C<@args>. |
|
598
|
|
|
|
|
|
|
|
|
599
|
|
|
|
|
|
|
For example: |
|
600
|
|
|
|
|
|
|
|
|
601
|
|
|
|
|
|
|
my $jobid = Proc::Async->start (qw{ wget -O cpan.index.html http://search.cpan.org/index.html }); |
|
602
|
|
|
|
|
|
|
|
|
603
|
|
|
|
|
|
|
or |
|
604
|
|
|
|
|
|
|
|
|
605
|
|
|
|
|
|
|
my $jobid = Proc::Async->start ( [qw{ wget -O cpan.index.html http://search.cpan.org/index.html }] ); |
|
606
|
|
|
|
|
|
|
|
|
607
|
|
|
|
|
|
|
If the given array of arguments has only one element, it is still |
|
608
|
|
|
|
|
|
|
considered as an array. Therefore, you cannot use a single string |
|
609
|
|
|
|
|
|
|
representing the full command-line: |
|
610
|
|
|
|
|
|
|
|
|
611
|
|
|
|
|
|
|
# this will not work |
|
612
|
|
|
|
|
|
|
$jobid = start ("date -u"); |
|
613
|
|
|
|
|
|
|
|
|
614
|
|
|
|
|
|
|
This is a feature not a bug. It prevents to let the shell interprets |
|
615
|
|
|
|
|
|
|
the meta-characters inside the arguments. More about it in the Perl's |
|
616
|
|
|
|
|
|
|
documentation (try: C). But sometimes you are willing |
|
617
|
|
|
|
|
|
|
to sacrifice safety and to let a shell to act for your benefit. An |
|
618
|
|
|
|
|
|
|
example is the usage of a pipe character in the command line. In order |
|
619
|
|
|
|
|
|
|
to allow it, you need to specify an option C |
|
620
|
|
|
|
|
|
|
in the start() method: |
|
621
|
|
|
|
|
|
|
|
|
622
|
|
|
|
|
|
|
# this works |
|
623
|
|
|
|
|
|
|
$jobid = start ("date -u", { Proc::Async::ALLOW_SHELL() => 1 }); |
|
624
|
|
|
|
|
|
|
|
|
625
|
|
|
|
|
|
|
# ...and this works, as well |
|
626
|
|
|
|
|
|
|
# (it prints number 3 to the standard output) |
|
627
|
|
|
|
|
|
|
$jobid = start ("echo one two three | wc -w", { Proc::Async::ALLOW_SHELL() => 1 }); |
|
628
|
|
|
|
|
|
|
|
|
629
|
|
|
|
|
|
|
The options (so far only one is recognized) are given as a hashref |
|
630
|
|
|
|
|
|
|
that is the last argument of the C method. The keys of this |
|
631
|
|
|
|
|
|
|
hash are defined as constants in this module: |
|
632
|
|
|
|
|
|
|
|
|
633
|
|
|
|
|
|
|
use constant { |
|
634
|
|
|
|
|
|
|
ALLOW_SHELL => 'ALLOW_SHELL', |
|
635
|
|
|
|
|
|
|
|
|
636
|
|
|
|
|
|
|
}; |
|
637
|
|
|
|
|
|
|
|
|
638
|
|
|
|
|
|
|
For each job, this method creates a temporary directory (within your |
|
639
|
|
|
|
|
|
|
system temporary directory, which is, on Unix system, usually C) |
|
640
|
|
|
|
|
|
|
and change there (C) before executing the wanted external |
|
641
|
|
|
|
|
|
|
program. Keep this directory change in mind if your external programs |
|
642
|
|
|
|
|
|
|
are in the same directory as your Perl program that invokes them. You |
|
643
|
|
|
|
|
|
|
can use, for example, the C module to locate them correctly: |
|
644
|
|
|
|
|
|
|
|
|
645
|
|
|
|
|
|
|
use FindBin qw($Bin); |
|
646
|
|
|
|
|
|
|
... |
|
647
|
|
|
|
|
|
|
my @args = ("$Bin/my-external-program", ....); |
|
648
|
|
|
|
|
|
|
$jobid = Proc::Async->start (\@args); |
|
649
|
|
|
|
|
|
|
|
|
650
|
|
|
|
|
|
|
If you need to access this job directory (in case that you need more |
|
651
|
|
|
|
|
|
|
than provided by the methods of this module), use the method |
|
652
|
|
|
|
|
|
|
C to get its path and name. |
|
653
|
|
|
|
|
|
|
|
|
654
|
|
|
|
|
|
|
=head2 status($jobid) |
|
655
|
|
|
|
|
|
|
|
|
656
|
|
|
|
|
|
|
In scalar context, it returns status of the given process (given by |
|
657
|
|
|
|
|
|
|
its $jobid). The status is expressed by a plain text using the |
|
658
|
|
|
|
|
|
|
following constants: |
|
659
|
|
|
|
|
|
|
|
|
660
|
|
|
|
|
|
|
use constant { |
|
661
|
|
|
|
|
|
|
STATUS_UNKNOWN => 'unknown', |
|
662
|
|
|
|
|
|
|
STATUS_CREATED => 'created', |
|
663
|
|
|
|
|
|
|
STATUS_RUNNING => 'running', |
|
664
|
|
|
|
|
|
|
STATUS_COMPLETED => 'completed', |
|
665
|
|
|
|
|
|
|
STATUS_TERM_BY_REQ => 'terminated by request', |
|
666
|
|
|
|
|
|
|
STATUS_TERM_BY_ERR => 'terminated by error', |
|
667
|
|
|
|
|
|
|
}; |
|
668
|
|
|
|
|
|
|
|
|
669
|
|
|
|
|
|
|
In array context, it additionally returns (optional) details of the |
|
670
|
|
|
|
|
|
|
status. There can be zero to more details accompanying the status, |
|
671
|
|
|
|
|
|
|
e.g. the exit code, or the signal number that caused the process to |
|
672
|
|
|
|
|
|
|
die. The details are in plain text, no constants used. For example: |
|
673
|
|
|
|
|
|
|
|
|
674
|
|
|
|
|
|
|
$jobid = Proc::Async->start ('date'); |
|
675
|
|
|
|
|
|
|
@status = Proc::Async->status ($jobid); |
|
676
|
|
|
|
|
|
|
print join ("\n", @status); |
|
677
|
|
|
|
|
|
|
|
|
678
|
|
|
|
|
|
|
will print: |
|
679
|
|
|
|
|
|
|
|
|
680
|
|
|
|
|
|
|
running |
|
681
|
|
|
|
|
|
|
started at Sat May 18 09:35:27 2013 |
|
682
|
|
|
|
|
|
|
|
|
683
|
|
|
|
|
|
|
or |
|
684
|
|
|
|
|
|
|
|
|
685
|
|
|
|
|
|
|
$jobid = Proc::Async->start ('sleep', 5); |
|
686
|
|
|
|
|
|
|
... |
|
687
|
|
|
|
|
|
|
@status = Proc::Async->status ($jobid); |
|
688
|
|
|
|
|
|
|
print join ("\n", @status); |
|
689
|
|
|
|
|
|
|
|
|
690
|
|
|
|
|
|
|
will print: |
|
691
|
|
|
|
|
|
|
|
|
692
|
|
|
|
|
|
|
completed |
|
693
|
|
|
|
|
|
|
exit code 0 |
|
694
|
|
|
|
|
|
|
completed at Sat May 18 09:45:12 2013 |
|
695
|
|
|
|
|
|
|
elapsed time 5 seconds |
|
696
|
|
|
|
|
|
|
|
|
697
|
|
|
|
|
|
|
or, a case when the started job was killed: |
|
698
|
|
|
|
|
|
|
|
|
699
|
|
|
|
|
|
|
$jobid = Proc::Async->start ('sleep', 60); |
|
700
|
|
|
|
|
|
|
Proc::Async->signal ($jobid, 9); |
|
701
|
|
|
|
|
|
|
@status = Proc::Async->status ($jobid); |
|
702
|
|
|
|
|
|
|
print join ("\n", @status); |
|
703
|
|
|
|
|
|
|
|
|
704
|
|
|
|
|
|
|
will print: |
|
705
|
|
|
|
|
|
|
|
|
706
|
|
|
|
|
|
|
terminated by request |
|
707
|
|
|
|
|
|
|
terminated by signal 9 |
|
708
|
|
|
|
|
|
|
without coredump |
|
709
|
|
|
|
|
|
|
terminated at Sat May 18 09:41:56 2013 |
|
710
|
|
|
|
|
|
|
elapsed time 0 seconds |
|
711
|
|
|
|
|
|
|
|
|
712
|
|
|
|
|
|
|
=head2 is_finished($jobid) |
|
713
|
|
|
|
|
|
|
|
|
714
|
|
|
|
|
|
|
A convenient method that returns true if the status of the job |
|
715
|
|
|
|
|
|
|
indicates that the external program had finished (well or badly). Or |
|
716
|
|
|
|
|
|
|
false if not. Which includes the case when the state is unknown. |
|
717
|
|
|
|
|
|
|
|
|
718
|
|
|
|
|
|
|
=head2 signal($jobid [,$signal]) |
|
719
|
|
|
|
|
|
|
|
|
720
|
|
|
|
|
|
|
It sends a signal to the given job (given by the |
|
721
|
|
|
|
|
|
|
C<$jobid>). C<$signal> is a positive integer between 1 and 64. Default |
|
722
|
|
|
|
|
|
|
is 9 which means the KILL signal. The available signals are the ones |
|
723
|
|
|
|
|
|
|
listed out by C on your system. |
|
724
|
|
|
|
|
|
|
|
|
725
|
|
|
|
|
|
|
It returns true on success, zero on failure (no such job, no such |
|
726
|
|
|
|
|
|
|
process). It can also croak if the C<$signal> is invalid. |
|
727
|
|
|
|
|
|
|
|
|
728
|
|
|
|
|
|
|
=head2 result_list($jobid) |
|
729
|
|
|
|
|
|
|
|
|
730
|
|
|
|
|
|
|
It returns a list of (some) filenames that exist in the job directory |
|
731
|
|
|
|
|
|
|
that is specified by the given $jobid. The filenames are relative to |
|
732
|
|
|
|
|
|
|
this job directory, and they may include subdirectories if there are |
|
733
|
|
|
|
|
|
|
subdirectories within this job directory (it all depends what your |
|
734
|
|
|
|
|
|
|
external program created there). For example: |
|
735
|
|
|
|
|
|
|
|
|
736
|
|
|
|
|
|
|
$jobid = Proc::Async->start (qw{ wget -o log.file -O output.file http://www.perl.org/index.html }); |
|
737
|
|
|
|
|
|
|
... |
|
738
|
|
|
|
|
|
|
@files = Proc::Async->result_list ($jobid); |
|
739
|
|
|
|
|
|
|
print join ("\n", @files); |
|
740
|
|
|
|
|
|
|
|
|
741
|
|
|
|
|
|
|
prints: |
|
742
|
|
|
|
|
|
|
|
|
743
|
|
|
|
|
|
|
output.file |
|
744
|
|
|
|
|
|
|
log.file |
|
745
|
|
|
|
|
|
|
|
|
746
|
|
|
|
|
|
|
The names of the files returned by the C can be used in |
|
747
|
|
|
|
|
|
|
the method C in order to get the file content. |
|
748
|
|
|
|
|
|
|
|
|
749
|
|
|
|
|
|
|
If the given $jobid does not represent an existing (and readable) |
|
750
|
|
|
|
|
|
|
directory, it returns an empty list (without croaking). |
|
751
|
|
|
|
|
|
|
|
|
752
|
|
|
|
|
|
|
If the external program created new files inside new directories, the |
|
753
|
|
|
|
|
|
|
C returns names of these files, too. In other words, it |
|
754
|
|
|
|
|
|
|
returns names of all files found within the job directory (however |
|
755
|
|
|
|
|
|
|
deep in sub-directories), except special files (see the next |
|
756
|
|
|
|
|
|
|
paragraph) and empty sub-directories. |
|
757
|
|
|
|
|
|
|
|
|
758
|
|
|
|
|
|
|
There are also files with the special names, as defined by the |
|
759
|
|
|
|
|
|
|
following constants: |
|
760
|
|
|
|
|
|
|
|
|
761
|
|
|
|
|
|
|
use constant STDOUT_FILE => '___proc_async_stdout___'; |
|
762
|
|
|
|
|
|
|
use constant STDERR_FILE => '___proc_async_stderr___'; |
|
763
|
|
|
|
|
|
|
use constant CONFIG_FILE => '___proc_async_status.cfg'; |
|
764
|
|
|
|
|
|
|
|
|
765
|
|
|
|
|
|
|
These files contain standard streams of the external programs (their |
|
766
|
|
|
|
|
|
|
content can be fetched by the methods C and C) and |
|
767
|
|
|
|
|
|
|
internal information about the status of the executed program. |
|
768
|
|
|
|
|
|
|
|
|
769
|
|
|
|
|
|
|
Another example: If the contents of a job directory is the following: |
|
770
|
|
|
|
|
|
|
|
|
771
|
|
|
|
|
|
|
___proc_async_stdout___ |
|
772
|
|
|
|
|
|
|
___proc_async_stderr___ |
|
773
|
|
|
|
|
|
|
___proc_async_status.cfg |
|
774
|
|
|
|
|
|
|
a.file |
|
775
|
|
|
|
|
|
|
a.dir/ |
|
776
|
|
|
|
|
|
|
file1 |
|
777
|
|
|
|
|
|
|
file2 |
|
778
|
|
|
|
|
|
|
b.dir/ |
|
779
|
|
|
|
|
|
|
file3 |
|
780
|
|
|
|
|
|
|
empty.dir/ |
|
781
|
|
|
|
|
|
|
|
|
782
|
|
|
|
|
|
|
then the returned list will look like this: |
|
783
|
|
|
|
|
|
|
|
|
784
|
|
|
|
|
|
|
('a.file', |
|
785
|
|
|
|
|
|
|
'a.dir/file1', |
|
786
|
|
|
|
|
|
|
'a.dir/file2', |
|
787
|
|
|
|
|
|
|
'b.dir/file3') |
|
788
|
|
|
|
|
|
|
|
|
789
|
|
|
|
|
|
|
=head2 result($jobid, $file) |
|
790
|
|
|
|
|
|
|
|
|
791
|
|
|
|
|
|
|
It returns the content of the given $file from the job given by |
|
792
|
|
|
|
|
|
|
$jobid. The $file is a relative filename; must be one of those |
|
793
|
|
|
|
|
|
|
returned by method C. It returns undef if the $file |
|
794
|
|
|
|
|
|
|
does not exist (or if it does not exist in the list returned by |
|
795
|
|
|
|
|
|
|
C). |
|
796
|
|
|
|
|
|
|
|
|
797
|
|
|
|
|
|
|
For getting content of the standard stream, use the following methods: |
|
798
|
|
|
|
|
|
|
|
|
799
|
|
|
|
|
|
|
=head2 stdout($jobid) |
|
800
|
|
|
|
|
|
|
|
|
801
|
|
|
|
|
|
|
It returns the content of the STDOUT from the job given by $jobid. It |
|
802
|
|
|
|
|
|
|
may be an empty string if the job did not produce any STDOUT, or if |
|
803
|
|
|
|
|
|
|
the job does not exist anymore. |
|
804
|
|
|
|
|
|
|
|
|
805
|
|
|
|
|
|
|
=head2 stderr($jobid) |
|
806
|
|
|
|
|
|
|
|
|
807
|
|
|
|
|
|
|
It returns the content of the STDERR from the job given by $jobid. It |
|
808
|
|
|
|
|
|
|
may be an empty string if the job did not produce any STDERR, or if |
|
809
|
|
|
|
|
|
|
the job does not exist anymore. |
|
810
|
|
|
|
|
|
|
|
|
811
|
|
|
|
|
|
|
If you execute an external program that cannot be found you will find |
|
812
|
|
|
|
|
|
|
an error message about it here, as well: |
|
813
|
|
|
|
|
|
|
|
|
814
|
|
|
|
|
|
|
my $jobid = Proc::Async->start ('a-bad-program'); |
|
815
|
|
|
|
|
|
|
... |
|
816
|
|
|
|
|
|
|
print join ("\n", Proc::Async->status ($jobid); |
|
817
|
|
|
|
|
|
|
|
|
818
|
|
|
|
|
|
|
terminated by error |
|
819
|
|
|
|
|
|
|
exit code 2 |
|
820
|
|
|
|
|
|
|
completed at Sat May 18 11:02:04 2013 |
|
821
|
|
|
|
|
|
|
elapsed time 0 seconds |
|
822
|
|
|
|
|
|
|
|
|
823
|
|
|
|
|
|
|
print Proc::Async->stderr(); |
|
824
|
|
|
|
|
|
|
|
|
825
|
|
|
|
|
|
|
Can't exec "a-bad-program": No such file or directory at lib/Proc/Async.pm line 148. |
|
826
|
|
|
|
|
|
|
|
|
827
|
|
|
|
|
|
|
=head2 working_dir($jobid) |
|
828
|
|
|
|
|
|
|
|
|
829
|
|
|
|
|
|
|
It returns the name of the working directory for the given $jobid. Or |
|
830
|
|
|
|
|
|
|
undef if such working directory does not exist. |
|
831
|
|
|
|
|
|
|
|
|
832
|
|
|
|
|
|
|
You may notice that the $jobid looks like a name of a working |
|
833
|
|
|
|
|
|
|
directory. Actually, in the current implementation, it is, indeed, the |
|
834
|
|
|
|
|
|
|
same. But it may change in the future. Therefore, better use this |
|
835
|
|
|
|
|
|
|
method and do not rely on such sameness. |
|
836
|
|
|
|
|
|
|
|
|
837
|
|
|
|
|
|
|
=head2 clean($jobid) |
|
838
|
|
|
|
|
|
|
|
|
839
|
|
|
|
|
|
|
It deletes all files belonging to the given job, including its job |
|
840
|
|
|
|
|
|
|
directory. It returns the number of file successfully deleted. If you |
|
841
|
|
|
|
|
|
|
ask for a status of the job after being cleaned up, you get |
|
842
|
|
|
|
|
|
|
C. |
|
843
|
|
|
|
|
|
|
|
|
844
|
|
|
|
|
|
|
=head2 get_configuration($jobid) |
|
845
|
|
|
|
|
|
|
|
|
846
|
|
|
|
|
|
|
Use this method only if you wish to look at the internals (for example |
|
847
|
|
|
|
|
|
|
to get exact starting and ending time of a job). It creates a |
|
848
|
|
|
|
|
|
|
configuration (an instance of C) and fills it |
|
849
|
|
|
|
|
|
|
from the configuration file (if such file exists) for the given |
|
850
|
|
|
|
|
|
|
job. It returns a two-element array, the first element being a |
|
851
|
|
|
|
|
|
|
configuration instance, the second element the file name where the |
|
852
|
|
|
|
|
|
|
configuration was filled from: |
|
853
|
|
|
|
|
|
|
|
|
854
|
|
|
|
|
|
|
my $jobid = Proc::Async->start ('date', '-u'); |
|
855
|
|
|
|
|
|
|
... |
|
856
|
|
|
|
|
|
|
my ($cfg, $cfgfile) = Proc::Async->get_configuration ($jobid); |
|
857
|
|
|
|
|
|
|
foreach my $name ($cfg->param) { |
|
858
|
|
|
|
|
|
|
foreach my $value ($cfg->param ($name)) { |
|
859
|
|
|
|
|
|
|
print STDOUT "$name=$value\n"; |
|
860
|
|
|
|
|
|
|
} |
|
861
|
|
|
|
|
|
|
} |
|
862
|
|
|
|
|
|
|
|
|
863
|
|
|
|
|
|
|
will print: |
|
864
|
|
|
|
|
|
|
|
|
865
|
|
|
|
|
|
|
job.arg=date |
|
866
|
|
|
|
|
|
|
job.arg=-u |
|
867
|
|
|
|
|
|
|
job.ended=1368865570 |
|
868
|
|
|
|
|
|
|
job.id=/tmp/q74Bgd8mXX |
|
869
|
|
|
|
|
|
|
job.pid=22273 |
|
870
|
|
|
|
|
|
|
job.started=1368865570 |
|
871
|
|
|
|
|
|
|
job.status=completed |
|
872
|
|
|
|
|
|
|
job.status.detail=exit code 0 |
|
873
|
|
|
|
|
|
|
job.status.detail=completed at Sat May 18 11:26:10 2013 |
|
874
|
|
|
|
|
|
|
job.status.detail=elapsed time 0 seconds |
|
875
|
|
|
|
|
|
|
|
|
876
|
|
|
|
|
|
|
=head1 ADDITIONAL FILES |
|
877
|
|
|
|
|
|
|
|
|
878
|
|
|
|
|
|
|
The module distribution has several example and helping files (which |
|
879
|
|
|
|
|
|
|
are not installed when the module is fetched by the C or |
|
880
|
|
|
|
|
|
|
C). |
|
881
|
|
|
|
|
|
|
|
|
882
|
|
|
|
|
|
|
=head3 scripts/procasync |
|
883
|
|
|
|
|
|
|
|
|
884
|
|
|
|
|
|
|
It is a command-line oriented script that can invoke any of the |
|
885
|
|
|
|
|
|
|
functionality of this module. Its purpose is to test the module and, |
|
886
|
|
|
|
|
|
|
perhaps more importantly, to show how to use the module's |
|
887
|
|
|
|
|
|
|
methods. Otherwise, it does not make much sense (that is why it is not |
|
888
|
|
|
|
|
|
|
normally installed). |
|
889
|
|
|
|
|
|
|
|
|
890
|
|
|
|
|
|
|
It has its own (but only short) documentation: |
|
891
|
|
|
|
|
|
|
|
|
892
|
|
|
|
|
|
|
scripts/procasync -help |
|
893
|
|
|
|
|
|
|
|
|
894
|
|
|
|
|
|
|
or |
|
895
|
|
|
|
|
|
|
|
|
896
|
|
|
|
|
|
|
perldoc scripts/procasync |
|
897
|
|
|
|
|
|
|
|
|
898
|
|
|
|
|
|
|
Some examples are: |
|
899
|
|
|
|
|
|
|
|
|
900
|
|
|
|
|
|
|
scripts/procasync -start date |
|
901
|
|
|
|
|
|
|
scripts/procasync -start 'date -u' |
|
902
|
|
|
|
|
|
|
scripts/procasync -start 'sleep 100' |
|
903
|
|
|
|
|
|
|
|
|
904
|
|
|
|
|
|
|
The C<-start> arguments can be repeated if its arguments have spaces: |
|
905
|
|
|
|
|
|
|
|
|
906
|
|
|
|
|
|
|
scripts/procasync -start cat -start '/data/filename with spaces' |
|
907
|
|
|
|
|
|
|
|
|
908
|
|
|
|
|
|
|
All lines above print a job ID that must be used in a consequent usage: |
|
909
|
|
|
|
|
|
|
|
|
910
|
|
|
|
|
|
|
scripts/procasync -jobid /tmp/hBsXcrafhn -status |
|
911
|
|
|
|
|
|
|
scripts/procasync -jobid /tmp/hBsXcrafhn -stdout -stderr -rlist |
|
912
|
|
|
|
|
|
|
scripts/procasync -jobid /tmp/hBsXcrafhn -wdir |
|
913
|
|
|
|
|
|
|
...etc... |
|
914
|
|
|
|
|
|
|
|
|
915
|
|
|
|
|
|
|
=head3 examples/README |
|
916
|
|
|
|
|
|
|
|
|
917
|
|
|
|
|
|
|
Because this module is focused mainly on its usage within CGI scripts, |
|
918
|
|
|
|
|
|
|
there is an example of a simple web application. The C file |
|
919
|
|
|
|
|
|
|
explains how to install it and run it from your web server. Here |
|
920
|
|
|
|
|
|
|
L |
|
921
|
|
|
|
|
|
|
is its screenshot. |
|
922
|
|
|
|
|
|
|
|
|
923
|
|
|
|
|
|
|
=head3 t/data/extester |
|
924
|
|
|
|
|
|
|
|
|
925
|
|
|
|
|
|
|
This script can be used for testing this module (as it is used in the |
|
926
|
|
|
|
|
|
|
regular Perl tests and in the web application mentioned above). It can |
|
927
|
|
|
|
|
|
|
be invoked as an external program and, depending on its command line |
|
928
|
|
|
|
|
|
|
arguments, it creates some standard and/or standard error streams, |
|
929
|
|
|
|
|
|
|
exits with the specified exit code, etc. It has its own documentation: |
|
930
|
|
|
|
|
|
|
|
|
931
|
|
|
|
|
|
|
perldoc t/data/extester |
|
932
|
|
|
|
|
|
|
|
|
933
|
|
|
|
|
|
|
An example of its command-line: |
|
934
|
|
|
|
|
|
|
|
|
935
|
|
|
|
|
|
|
extester -stdout an-out -stderr an-err -exit 5 -create a.tmp=5 few/new/dirs/b.tmp=3 an/empty/dir/=0 |
|
936
|
|
|
|
|
|
|
|
|
937
|
|
|
|
|
|
|
which writes given short texts into stdout and stderr, creates two |
|
938
|
|
|
|
|
|
|
files (C and C, the latter one together with the given |
|
939
|
|
|
|
|
|
|
sub-directories hierarchy) and it exits with exit code 5. |
|
940
|
|
|
|
|
|
|
|
|
941
|
|
|
|
|
|
|
=head1 BUGS |
|
942
|
|
|
|
|
|
|
|
|
943
|
|
|
|
|
|
|
Please report any bugs or feature requests to |
|
944
|
|
|
|
|
|
|
L. |
|
945
|
|
|
|
|
|
|
|
|
946
|
|
|
|
|
|
|
=head2 Missing features |
|
947
|
|
|
|
|
|
|
|
|
948
|
|
|
|
|
|
|
=over |
|
949
|
|
|
|
|
|
|
|
|
950
|
|
|
|
|
|
|
=item Standard input |
|
951
|
|
|
|
|
|
|
|
|
952
|
|
|
|
|
|
|
Currently, there is no support for providing standard input for the |
|
953
|
|
|
|
|
|
|
started external process. |
|
954
|
|
|
|
|
|
|
|
|
955
|
|
|
|
|
|
|
=back |
|
956
|
|
|
|
|
|
|
|
|
957
|
|
|
|
|
|
|
=head1 AUTHOR |
|
958
|
|
|
|
|
|
|
|
|
959
|
|
|
|
|
|
|
Martin Senger |
|
960
|
|
|
|
|
|
|
|
|
961
|
|
|
|
|
|
|
=head1 COPYRIGHT AND LICENSE |
|
962
|
|
|
|
|
|
|
|
|
963
|
|
|
|
|
|
|
This software is copyright (c) 2013 by Martin Senger, CBRC-KAUST (Computational Biology Research Center - King Abdullah University of Science and Technology) All Rights Reserved. |
|
964
|
|
|
|
|
|
|
|
|
965
|
|
|
|
|
|
|
This is free software; you can redistribute it and/or modify it under |
|
966
|
|
|
|
|
|
|
the same terms as the Perl 5 programming language system itself. |
|
967
|
|
|
|
|
|
|
|
|
968
|
|
|
|
|
|
|
=cut |
|
969
|
|
|
|
|
|
|
|
|
970
|
|
|
|
|
|
|
|
|
971
|
|
|
|
|
|
|
__END__ |