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# $Id: Relationship.pm 2014-11-14 erick.antezana $ |
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# Module : Relationship.pm |
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# Purpose : Relationship in the Ontology. |
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# License : Copyright (c) 2006-2014 by Erick Antezana. All rights reserved. |
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# This program is free software; you can redistribute it and/or |
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# modify it under the same terms as Perl itself. |
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# Contact : Erick Antezana |
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# |
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package OBO::Core::Relationship; |
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use Carp; |
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use strict; |
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use warnings; |
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sub new { |
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my $class = shift; |
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my $self = {}; |
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$self->{ID} = undef; # required, string (1) |
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$self->{TYPE} = undef; # required, string (1) |
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$self->{HEAD} = undef; # required, OBO::Core::Term or OBO::Core::RelationshipType or OBO::Core::Term (1: instance_of) or OBO::Core::Instance or OBO::Util::Datatype (TODO) or OBO::Util::Datatype (TODO: property_value: shoe_size "8" xsd:positiveInteger) |
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# ^^ ^^ ^^ ^^ ^^ ^^ |
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# || || || || || || |
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$self->{TAIL} = undef; # required, OBO::Core::Term or OBO::Core::RelationshipType or OBO::Core::Instance (1: instance_of) or OBO::Core::Term or OBO::Core::Term (TODO) or OBO::Core::Instance (TODO) |
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bless ($self, $class); |
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return $self; |
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} |
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=head2 id |
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Usage - print $relationship->id() or $relationship->id($id) |
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Returns - the relationship ID (string) |
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Args - the relationship ID (string) |
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Function - gets/sets an ID |
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=cut |
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sub id { |
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$_[0]->{ID} = $_[1] if ($_[1]); |
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return $_[0]->{ID}; |
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} |
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=head2 type |
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Usage - $relationship->type('is_a') or print $relationship->type() |
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Returns - the type of the relationship (string) |
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Args - the type of the relationship (string) |
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Function - gets/sets the type of the relationship |
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Remark - this field corresponds to the relationship type ID (c.f. OBO::Core::RelationshipType::id()) |
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=cut |
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sub type { |
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$_[0]->{TYPE} = $_[1] if ($_[1]); |
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return $_[0]->{TYPE}; |
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} |
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=head2 equals |
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Usage - print $relationship->equals($another_relationship) |
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Returns - either 1 (true) or 0 (false) |
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Args - the relationship (OBO::Core::Relationship) to compare with |
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Function - tells whether this relationship is equal to the parameter |
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=cut |
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sub equals { |
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my $result = 0; |
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if ($_[1]) { |
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if ($_[1] && eval { $_[1]->isa('OBO::Core::Relationship') }) { |
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my $self_id = $_[0]->{'ID'}; |
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my $target_id = $_[1]->{'ID'}; |
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croak 'The ID of this relationship is not defined.' if (!defined($self_id)); |
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croak 'The ID of the target relationship is not defined.' if (!defined($target_id)); |
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$result = ($self_id eq $target_id); |
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} else { |
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croak "An unrecognized object type (not a OBO::Core::Relationship) was found: '", $_[1], "'"; |
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} |
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} |
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return $result; |
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} |
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=head2 head |
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Usage - $relationship->head($object) or $relationship->head() |
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Returns - the OBO::Core::Term (object or target) or OBO::Core::RelationshipType (object or target) targeted by this relationship |
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Args - the target term (OBO::Core::Term) or the target relationship type (OBO::Core::RelationshipType) |
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Function - gets/sets the term/relationship type attached to the head of the relationship |
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=cut |
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sub head { |
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$_[0]->{HEAD} = $_[1] if ($_[1]); |
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return $_[0]->{HEAD}; |
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} |
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=head2 tail |
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Usage - $relationship->tail($subject) or $relationship->tail() |
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Returns - the OBO::Core::Term (subject or source) or OBO::Core::RelationshipType (subject or source) sourced by this relationship or the OBO::Core::Instance (subject or source) |
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Args - the source term (OBO::Core::Term) or the source relationship type (OBO::Core::RelationshipType) or the source instance (OBO::Core::Instance) |
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Function - gets/sets the term/relationship type/instance attached to the tail of the relationship |
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=cut |
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sub tail { |
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$_[0]->{TAIL} = $_[1] if ($_[1]); |
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return $_[0]->{TAIL}; |
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} |
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=head2 link |
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Usage - $relationship->link($tail, $head) or $relationship->link() |
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Returns - the two Terms (OBO::Core::Term) or two RelationshipTypes (OBO::Core::RelationshipType) or an Instance (OBO::Core::Instance) and a Term (OBO::Core::Term) --subject and source-- connected by this relationship |
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Args - the source (tail, OBO::Core::Term/OBO::Core::RelationshipType) and target(head, OBO::Core::Term/OBO::Core::RelationshipType) term/relationship type |
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Function - gets/sets the terms/relationship type attached to this relationship |
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=cut |
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sub link { |
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($_[0]->{TAIL}, $_[0]->{HEAD}) = ($_[1], $_[2]) if ($_[1] && $_[2]); |
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return ($_[0]->{TAIL}, $_[0]->{HEAD}); |
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} |
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1; |
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__END__ |