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package Lingua::BioYaTeA; |
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use strict; |
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use warnings; |
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use utf8; |
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=encoding utf8 |
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=head1 NAME |
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Lingua::BioYaTeA - Perl extension of Lingua::YaTeA for extracting terms from a biomedical corpus. |
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=head1 SYNOPSIS |
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use Lingua::BioYaTeA; |
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my %config = Lingua::YaTeA::load_config($rcfile); |
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$yatea = Lingua::YaTeA->new($config{"OPTIONS"}, \%config); |
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$corpus = Lingua::YaTeA::Corpus->new($corpus_path,$yatea->getOptionSet,$yatea->getMessageSet); |
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$yatea->termExtraction($corpus); |
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=head1 DESCRIPTION |
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This module is the main module of the software BioYaTeA which is an |
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adaptation of YaTeA (C) for biomedical text. |
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The module inherits from all the class and attributes of |
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C. The input and output files but also the |
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configuration files follow the same format as YaTeA. |
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The tuning concerns the configuration files (in the directory |
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C. |
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Default configuration is assumed to be C. |
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For the use of BioYaTeA, see the documentation with the script |
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C. |
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=head1 METHODS |
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=head2 new() |
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new($command_line_options_h,$system_config_h); |
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The methods creates a new term extractor and sets options from the |
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command line (C<$commend_line_options_h>) and options defined in the |
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hashtable (C<$system_config_h>) given by address. The methods returns |
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the created object. |
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=head2 load_config() |
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load_config($rcfile); |
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The method loads the configuration of the NLP Platform by reading the |
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configuration file given in argument. It returns the hashtable |
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containing the configuration. |
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=head1 SEE ALSO |
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Documentation of Lingua::YaTeA |
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=head1 AUTHORS |
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Wiktoria Golik , Zorana Ratkovic , Robert Bossy , Claire Nédellec , Thierry Hamon |
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=head1 LICENSE |
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Copyright (C) 2012 Wiktoria Golik, Zorana Ratkovic, Robert Bossy, Claire Nédellec and Thierry Hamon |
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This library is free software; you can redistribute it and/or modify |
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it under the same terms as Perl itself, either Perl version 5.8.6 or, |
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at your option, any later version of Perl 5 you may have available. |
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=cut |
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15202
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use Lingua::YaTeA; |
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1921629
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our @ISA = qw(Lingua::YaTeA); |
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our $VERSION='0.11'; |
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sub new { |
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my ($class,$command_line_options_h,$system_config_h) = @_; |
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if ($Lingua::YaTeA::VERSION < 0.6) { |
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warn "***************************************************************************\n"; |
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warn "Something wrong: attempting to use a version Lingua::YaTeA greater than 0.6\n"; |
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warn "while found version is " . $Lingua::YaTeA::VERSION . "\n"; |
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warn "Please install the right version\n\n"; |
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warn "Exiting...\n"; |
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warn "***************************************************************************\n"; |
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exit -1; |
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} |
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my $this = $class->SUPER::new($command_line_options_h,$system_config_h); |
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bless ($this,$class); |
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return $this; |
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} |
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sub load_config { |
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# my ($class, $rcfile) = @_; |
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my $rcfile; |
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my $class = shift; |
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if (@_) { |
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$rcfile = shift; |
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} else { |
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$rcfile = $class; |
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} |
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if ((! defined $rcfile) || ($rcfile eq "")) { |
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$rcfile = "/etc/bioyatea/bioyatea.rc"; |
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} |
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print STDERR "$rcfile : $class\n"; |
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return(Lingua::YaTeA::load_config($rcfile)); |
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} |
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1; |