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package HPC::Runner::Command::Utils::Base; |
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1
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404288
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use Cwd; |
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use File::Path qw(make_path remove_tree); |
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use List::Uniq ':all'; |
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511
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use File::Spec; |
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use MooseX::App::Role; |
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6809
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use MooseX::Types::Path::Tiny qw/Path Paths AbsPath AbsFile/; |
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=head1 HPC::Runner::Command::Utils::Base |
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Base class for HPC::Runner::Command libraries. |
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This is a Moose Role. To use in any another applications or plugins call as |
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package MyApp; |
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use Moose; |
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with 'HPC::Runner::Command::Utils::Base'; |
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=head2 Command Line Options |
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=head3 infile |
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File of commands separated by newline. The command 'wait' indicates all previous commands should finish before starting the next one. |
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=cut |
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option 'infile' => ( |
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is => 'rw', |
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required => 1, |
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documentation => |
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35
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q{File of commands separated by newline. The command 'wait' indicates all previous commands should finish before starting the next one.}, |
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36
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isa => AbsFile, |
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37
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coerce => 1, |
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38
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cmd_aliases => ['i'], |
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39
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); |
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40
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41
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=head3 outdir |
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43
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Directory to write out files and optionally, logs. |
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45
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=cut |
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46
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47
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option 'outdir' => ( |
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48
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is => 'rw', |
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49
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isa => AbsPath, |
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50
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lazy => 1, |
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51
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coerce => 1, |
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52
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required => 1, |
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53
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default => \&set_outdir, |
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54
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documentation => q{Directory to write out files.}, |
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55
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trigger => \&_make_the_dirs, |
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56
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predicate => 'has_outdir', |
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57
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); |
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58
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59
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option 'basedir' => ( |
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60
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is => 'rw', |
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61
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isa => AbsPath, |
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62
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lazy => 1, |
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63
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coerce => 1, |
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64
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required => 1, |
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65
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default => \&set_basedir, |
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66
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documentation => q{Base directory to write out files.}, |
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67
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trigger => \&_make_the_dirs, |
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68
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predicate => 'has_basedir', |
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69
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); |
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70
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71
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#These two should both be in execute_jobs |
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72
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73
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=head3 procs |
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74
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75
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Total number of concurrent running tasks. |
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76
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77
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Analagous to parallel --jobs i |
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79
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=cut |
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80
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81
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option 'procs' => ( |
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82
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is => 'rw', |
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83
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isa => 'Int', |
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84
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default => 1, |
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85
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required => 0, |
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86
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documentation => |
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87
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q{Total number of concurrently running jobs allowed at any time.} |
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88
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); |
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89
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90
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option 'poll_time' => ( |
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91
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is => 'rw', |
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92
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isa => 'Num', |
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93
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documentation => |
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94
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'Time in seconds to poll the process for memory profiling.', |
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95
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default => 5, |
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96
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cmd_aliases => ['pt'], |
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97
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); |
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98
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99
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option 'memory_diff' => ( |
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100
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is => 'rw', |
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101
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isa => 'Num', |
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102
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documentation => 'Difference from last memory profile in order to record.', |
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103
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default => 0.10, |
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104
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cmd_aliases => ['md'], |
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105
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); |
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106
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107
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=head2 Attributes |
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108
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109
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=cut |
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110
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111
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has 'cmd' => ( |
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112
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traits => ['String'], |
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113
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is => 'rw', |
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114
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isa => 'Str', |
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115
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required => 0, |
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116
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handles => { |
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117
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add_cmd => 'append', |
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118
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match_cmd => 'match', |
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119
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}, |
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120
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predicate => 'has_cmd', |
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121
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clearer => 'clear_cmd', |
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122
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); |
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123
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124
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=head3 set_basedir |
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125
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126
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=cut |
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127
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128
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sub set_basedir { |
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129
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1
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1
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1
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2
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my $self = shift; |
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130
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131
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1
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50
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34
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if ( $self->has_basedir ) { |
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132
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0
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0
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make_path( $self->basedir ); |
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133
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0
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0
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return; |
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134
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} |
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135
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136
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1
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29
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my $dt = $self->dt; |
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137
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1
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6
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$dt = "$dt"; |
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138
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1
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50
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$dt =~ s/:/-/g; |
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139
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140
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1
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3
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my $outdir; |
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141
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1
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50
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33
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41
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if ( $self->has_version && $self->has_git ) { |
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142
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0
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0
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0
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if ( $self->has_project ) { |
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143
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0
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0
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$outdir = |
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144
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File::Spec->catdir( 'hpc-runner', $self->project, $dt, |
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145
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$self->version, ); |
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146
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} |
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147
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else { |
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148
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0
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0
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$outdir = File::Spec->catdir( 'hpc-runner', $dt, $self->version, ); |
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149
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} |
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150
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} |
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151
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else { |
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152
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1
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50
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43
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if ( $self->has_project ) { |
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153
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0
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0
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$outdir = File::Spec->catdir( 'hpc-runner', $dt, $self->project, ); |
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154
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} |
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155
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else { |
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156
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1
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11
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$outdir = File::Spec->catdir( 'hpc-runner', $dt ); |
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157
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} |
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158
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} |
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159
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160
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1
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256
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make_path($outdir); |
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161
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162
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1
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34
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return $outdir; |
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163
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} |
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164
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165
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=head3 set_outdir |
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166
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167
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Internal variable |
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168
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169
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=cut |
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170
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171
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##Why is this different from set logdir? |
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172
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173
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sub set_outdir { |
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174
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0
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0
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1
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0
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my $self = shift; |
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175
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176
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0
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0
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0
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if ( $self->has_outdir ) { |
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177
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0
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0
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$self->_make_the_dirs( $self->outdir ); |
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178
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0
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0
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return; |
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179
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} |
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180
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181
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0
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0
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my $outdir = File::Spec->catdir($self->basedir, 'scratch'); |
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182
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183
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0
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0
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make_path($outdir); |
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184
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185
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0
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0
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return $outdir; |
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186
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} |
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187
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188
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=head3 make_the_dirs |
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189
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190
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Make any necessary directories |
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191
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192
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=cut |
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193
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194
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sub _make_the_dirs { |
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195
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3
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3
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54
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my ( $self, $outdir ) = @_; |
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196
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197
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3
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100
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32
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make_path($outdir) unless -d $outdir; |
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198
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} |
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199
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200
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=head3 datetime_now |
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201
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202
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=cut |
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203
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204
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sub datetime_now { |
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205
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0
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0
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1
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my $self = shift; |
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206
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207
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0
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my $dt = DateTime->now( time_zone => 'local' ); |
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208
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209
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0
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my $ymd = $dt->ymd(); |
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210
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0
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my $hms = $dt->hms(); |
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211
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212
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0
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return ( $dt, $ymd, $hms ); |
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213
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} |
|
214
|
|
|
|
|
|
|
|
|
215
|
|
|
|
|
|
|
=head3 git_things |
|
216
|
|
|
|
|
|
|
|
|
217
|
|
|
|
|
|
|
Get git versions, branch, and tags |
|
218
|
|
|
|
|
|
|
|
|
219
|
|
|
|
|
|
|
=cut |
|
220
|
|
|
|
|
|
|
|
|
221
|
|
|
|
|
|
|
sub git_things { |
|
222
|
0
|
|
|
0
|
1
|
|
my $self = shift; |
|
223
|
|
|
|
|
|
|
|
|
224
|
0
|
|
|
|
|
|
$self->init_git; |
|
225
|
0
|
|
|
|
|
|
$self->dirty_run; |
|
226
|
0
|
|
|
|
|
|
$self->git_info; |
|
227
|
|
|
|
|
|
|
|
|
228
|
0
|
0
|
|
|
|
|
return unless $self->has_git; |
|
229
|
|
|
|
|
|
|
|
|
230
|
0
|
0
|
|
|
|
|
return unless $self->has_version; |
|
231
|
|
|
|
|
|
|
|
|
232
|
0
|
0
|
|
|
|
|
if ( $self->tags ) { |
|
233
|
0
|
0
|
|
|
|
|
push( @{ $self->tags }, "$self->{version}" ) if $self->has_version; |
|
|
0
|
|
|
|
|
|
|
|
234
|
|
|
|
|
|
|
} |
|
235
|
|
|
|
|
|
|
else { |
|
236
|
0
|
|
|
|
|
|
$self->tags( [ $self->version ] ); |
|
237
|
|
|
|
|
|
|
} |
|
238
|
0
|
|
|
|
|
|
my @tmp = uniq( @{ $self->tags } ); |
|
|
0
|
|
|
|
|
|
|
|
239
|
0
|
|
|
|
|
|
$self->tags( \@tmp ); |
|
240
|
|
|
|
|
|
|
} |
|
241
|
|
|
|
|
|
|
|
|
242
|
|
|
|
|
|
|
1; |