line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
package HPC::Runner::Command::Logger::JSON::Archive; |
2
|
|
|
|
|
|
|
|
3
|
1
|
|
|
1
|
|
8
|
use Moose; |
|
1
|
|
|
|
|
3
|
|
|
1
|
|
|
|
|
9
|
|
4
|
1
|
|
|
1
|
|
10090
|
use MooseX::NonMoose; |
|
1
|
|
|
|
|
1429
|
|
|
1
|
|
|
|
|
6
|
|
5
|
|
|
|
|
|
|
|
6
|
1
|
|
|
1
|
|
82289
|
use File::Spec; |
|
1
|
|
|
|
|
3
|
|
|
1
|
|
|
|
|
33
|
|
7
|
1
|
|
|
1
|
|
8
|
use File::Slurp; |
|
1
|
|
|
|
|
3
|
|
|
1
|
|
|
|
|
98
|
|
8
|
1
|
|
|
1
|
|
8
|
use Try::Tiny; |
|
1
|
|
|
|
|
4
|
|
|
1
|
|
|
|
|
76
|
|
9
|
1
|
|
|
1
|
|
10
|
use Path::Tiny; |
|
1
|
|
|
|
|
4
|
|
|
1
|
|
|
|
|
66
|
|
10
|
1
|
|
|
1
|
|
8
|
use Data::Dumper; |
|
1
|
|
|
|
|
4
|
|
|
1
|
|
|
|
|
73
|
|
11
|
1
|
|
|
1
|
|
9
|
use Capture::Tiny ':all'; |
|
1
|
|
|
|
|
4
|
|
|
1
|
|
|
|
|
221
|
|
12
|
1
|
|
|
1
|
|
10
|
use File::Temp qw/ tempfile tempdir /; |
|
1
|
|
|
|
|
3
|
|
|
1
|
|
|
|
|
81
|
|
13
|
1
|
|
|
1
|
|
8
|
use File::Path qw(make_path remove_tree); |
|
1
|
|
|
|
|
3
|
|
|
1
|
|
|
|
|
70
|
|
14
|
1
|
|
|
1
|
|
10
|
use Cwd; |
|
1
|
|
|
|
|
4
|
|
|
1
|
|
|
|
|
83
|
|
15
|
1
|
|
|
1
|
|
8
|
use File::Temp qw(tempdir); |
|
1
|
|
|
|
|
13
|
|
|
1
|
|
|
|
|
63
|
|
16
|
1
|
|
|
1
|
|
9
|
use Log::Log4perl qw(:easy); |
|
1
|
|
|
|
|
4
|
|
|
1
|
|
|
|
|
13
|
|
17
|
1
|
|
|
1
|
|
2266
|
use IPC::Run qw(run); |
|
1
|
|
|
|
|
31517
|
|
|
1
|
|
|
|
|
1090
|
|
18
|
|
|
|
|
|
|
|
19
|
|
|
|
|
|
|
extends 'Archive::Tar::Wrapper'; |
20
|
|
|
|
|
|
|
|
21
|
|
|
|
|
|
|
sub contains_file { |
22
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
23
|
0
|
|
|
|
|
|
my $file = shift; |
24
|
|
|
|
|
|
|
|
25
|
0
|
|
|
|
|
|
my $found = 0; |
26
|
0
|
|
|
|
|
|
$self->list_reset(); |
27
|
|
|
|
|
|
|
|
28
|
0
|
|
|
|
|
|
while ( my $entry = $self->list_next() ) { |
29
|
0
|
|
|
|
|
|
my ( $tar_path, $phys_path ) = @$entry; |
30
|
0
|
0
|
|
|
|
|
if ( $tar_path eq $file ) { |
31
|
0
|
|
|
|
|
|
$found = 1; |
32
|
0
|
|
|
|
|
|
last; |
33
|
|
|
|
|
|
|
} |
34
|
|
|
|
|
|
|
} |
35
|
|
|
|
|
|
|
|
36
|
0
|
|
|
|
|
|
$self->list_reset(); |
37
|
0
|
|
|
|
|
|
return $found; |
38
|
|
|
|
|
|
|
} |
39
|
|
|
|
|
|
|
|
40
|
|
|
|
|
|
|
sub add_data { |
41
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
42
|
0
|
|
|
|
|
|
my $file = shift; |
43
|
0
|
|
|
|
|
|
my $data = shift; |
44
|
0
|
|
|
|
|
|
my $append = shift; |
45
|
|
|
|
|
|
|
|
46
|
0
|
0
|
|
|
|
|
$append = 0 if !$append; |
47
|
|
|
|
|
|
|
|
48
|
0
|
0
|
|
|
|
|
return unless $file; |
49
|
0
|
0
|
|
|
|
|
$data = '' unless $data; |
50
|
|
|
|
|
|
|
|
51
|
0
|
|
|
|
|
|
my $cwd = getcwd(); |
52
|
0
|
|
|
|
|
|
my $tmpdir = tempdir( CLEANUP => 0 ); |
53
|
0
|
|
|
|
|
|
chdir $tmpdir; |
54
|
|
|
|
|
|
|
|
55
|
0
|
|
|
|
|
|
my $rel_path = File::Spec->abs2rel($file); |
56
|
0
|
|
|
|
|
|
path($rel_path)->touchpath; |
57
|
0
|
|
|
|
|
|
path($rel_path)->touch; |
58
|
|
|
|
|
|
|
|
59
|
|
|
|
|
|
|
try { |
60
|
0
|
|
|
0
|
|
|
write_file( $rel_path, { append => $append }, $data ); |
61
|
|
|
|
|
|
|
} |
62
|
|
|
|
|
|
|
catch { |
63
|
0
|
|
|
0
|
|
|
warn "We were not able to write data to file $file $_\n"; |
64
|
0
|
|
|
|
|
|
}; |
65
|
|
|
|
|
|
|
|
66
|
0
|
|
|
|
|
|
$self->add( $rel_path, $rel_path ); |
67
|
|
|
|
|
|
|
|
68
|
0
|
|
|
|
|
|
chdir $cwd; |
69
|
0
|
|
|
|
|
|
remove_tree($tmpdir); |
70
|
|
|
|
|
|
|
} |
71
|
|
|
|
|
|
|
|
72
|
|
|
|
|
|
|
sub replace_content { |
73
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
74
|
0
|
|
|
|
|
|
my $file = shift; |
75
|
0
|
|
|
|
|
|
my $data = shift; |
76
|
|
|
|
|
|
|
|
77
|
0
|
|
|
|
|
|
$self->add_data( $file, $data, 0 ); |
78
|
|
|
|
|
|
|
} |
79
|
|
|
|
|
|
|
|
80
|
|
|
|
|
|
|
sub get_content { |
81
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
82
|
0
|
|
|
|
|
|
my $file = shift; |
83
|
|
|
|
|
|
|
|
84
|
0
|
|
|
|
|
|
$self->list_reset(); |
85
|
0
|
|
|
|
|
|
my $data = '{}'; |
86
|
|
|
|
|
|
|
|
87
|
0
|
|
|
|
|
|
while ( my $entry = $self->list_next() ) { |
88
|
0
|
|
|
|
|
|
my ( $tar_path, $phys_path ) = @$entry; |
89
|
0
|
0
|
|
|
|
|
if ( $tar_path eq $file ) { |
90
|
|
|
|
|
|
|
try { |
91
|
0
|
|
|
0
|
|
|
$data = read_file( $entry->[1] ); |
92
|
0
|
|
|
|
|
|
}; |
93
|
0
|
|
|
|
|
|
last; |
94
|
|
|
|
|
|
|
} |
95
|
|
|
|
|
|
|
} |
96
|
0
|
|
|
|
|
|
$self->list_reset(); |
97
|
0
|
|
|
|
|
|
return $data; |
98
|
|
|
|
|
|
|
} |
99
|
|
|
|
|
|
|
|
100
|
|
|
|
|
|
|
############################################################ |
101
|
|
|
|
|
|
|
# Read and write are very nearly the same as the original. The only major |
102
|
|
|
|
|
|
|
# difference was to get rid of the DEBUG statement about Running |
103
|
|
|
|
|
|
|
############################################################ |
104
|
|
|
|
|
|
|
|
105
|
|
|
|
|
|
|
around 'read' => sub { |
106
|
|
|
|
|
|
|
my $orig = shift; |
107
|
|
|
|
|
|
|
my $self = shift; |
108
|
|
|
|
|
|
|
my $tarfile = shift; |
109
|
|
|
|
|
|
|
my @files = @_; |
110
|
|
|
|
|
|
|
|
111
|
|
|
|
|
|
|
my $cwd = getcwd(); |
112
|
|
|
|
|
|
|
|
113
|
|
|
|
|
|
|
$tarfile = File::Spec->rel2abs($tarfile); |
114
|
|
|
|
|
|
|
chdir $self->{tardir} |
115
|
|
|
|
|
|
|
or LOGDIE "Cannot chdir to $self->{tardir}"; |
116
|
|
|
|
|
|
|
|
117
|
|
|
|
|
|
|
my $compr_opt = ""; |
118
|
|
|
|
|
|
|
$compr_opt = $self->is_compressed($tarfile); |
119
|
|
|
|
|
|
|
|
120
|
|
|
|
|
|
|
my $cmd = [ |
121
|
|
|
|
|
|
|
$self->{tar}, |
122
|
|
|
|
|
|
|
"${compr_opt}x$self->{tar_read_options}", |
123
|
|
|
|
|
|
|
@{ $self->{tar_gnu_read_options} }, |
124
|
|
|
|
|
|
|
"-f", $tarfile, @files |
125
|
|
|
|
|
|
|
]; |
126
|
|
|
|
|
|
|
|
127
|
|
|
|
|
|
|
my $rc = run( $cmd, \my ( $in, $out, $err ) ); |
128
|
|
|
|
|
|
|
|
129
|
|
|
|
|
|
|
if ( !$rc ) { |
130
|
|
|
|
|
|
|
ERROR "@$cmd failed: $err"; |
131
|
|
|
|
|
|
|
chdir $cwd or LOGDIE "Cannot chdir to $cwd"; |
132
|
|
|
|
|
|
|
return undef; |
133
|
|
|
|
|
|
|
} |
134
|
|
|
|
|
|
|
|
135
|
|
|
|
|
|
|
WARN $err if $err; |
136
|
|
|
|
|
|
|
|
137
|
|
|
|
|
|
|
chdir $cwd or LOGDIE "Cannot chdir to $cwd"; |
138
|
|
|
|
|
|
|
|
139
|
|
|
|
|
|
|
return 1; |
140
|
|
|
|
|
|
|
}; |
141
|
|
|
|
|
|
|
|
142
|
|
|
|
|
|
|
around 'write' => sub { |
143
|
|
|
|
|
|
|
my ( $orig, $self, $tarfile, $compress ) = @_; |
144
|
|
|
|
|
|
|
|
145
|
|
|
|
|
|
|
my $cwd = getcwd(); |
146
|
|
|
|
|
|
|
chdir $self->{tardir} or LOGDIE "Can't chdir to $self->{tardir} ($!)"; |
147
|
|
|
|
|
|
|
|
148
|
|
|
|
|
|
|
$tarfile = File::Spec->rel2abs($tarfile); |
149
|
|
|
|
|
|
|
|
150
|
|
|
|
|
|
|
my $compr_opt = ""; |
151
|
|
|
|
|
|
|
$compr_opt = "z" if $compress; |
152
|
|
|
|
|
|
|
|
153
|
|
|
|
|
|
|
opendir DIR, "." or LOGDIE "Cannot open $self->{tardir}"; |
154
|
|
|
|
|
|
|
my @top_entries = grep { $_ !~ /^\.\.?$/ } readdir DIR; |
155
|
|
|
|
|
|
|
closedir DIR; |
156
|
|
|
|
|
|
|
|
157
|
|
|
|
|
|
|
my $cmd = [ |
158
|
|
|
|
|
|
|
$self->{tar}, "${compr_opt}cf$self->{tar_write_options}", |
159
|
|
|
|
|
|
|
$tarfile, @{ $self->{tar_gnu_write_options} } |
160
|
|
|
|
|
|
|
]; |
161
|
|
|
|
|
|
|
|
162
|
|
|
|
|
|
|
if ( @top_entries > $self->{max_cmd_line_args} ) { |
163
|
|
|
|
|
|
|
my $filelist_file = File::Spec->catdir( $self->{tmpdir}, "file-list" ); |
164
|
|
|
|
|
|
|
write_file( $filelist_file, { append => 0 }, '' ) |
165
|
|
|
|
|
|
|
or LOGDIE "Cannot open $filelist_file ($!)"; |
166
|
|
|
|
|
|
|
|
167
|
|
|
|
|
|
|
for (@top_entries) { |
168
|
|
|
|
|
|
|
write_file( $filelist_file, { append => 1 }, $_ ); |
169
|
|
|
|
|
|
|
} |
170
|
|
|
|
|
|
|
push @$cmd, "-T", $filelist_file; |
171
|
|
|
|
|
|
|
} |
172
|
|
|
|
|
|
|
else { |
173
|
|
|
|
|
|
|
push @$cmd, @top_entries; |
174
|
|
|
|
|
|
|
} |
175
|
|
|
|
|
|
|
|
176
|
|
|
|
|
|
|
my $rc = run( $cmd, \my ( $in, $out, $err ) ); |
177
|
|
|
|
|
|
|
|
178
|
|
|
|
|
|
|
if ( !$rc ) { |
179
|
|
|
|
|
|
|
ERROR "@$cmd failed: $err"; |
180
|
|
|
|
|
|
|
chdir $cwd or LOGDIE "Cannot chdir to $cwd"; |
181
|
|
|
|
|
|
|
return undef; |
182
|
|
|
|
|
|
|
} |
183
|
|
|
|
|
|
|
|
184
|
|
|
|
|
|
|
WARN $err if $err; |
185
|
|
|
|
|
|
|
|
186
|
|
|
|
|
|
|
chdir $cwd or LOGDIE "Cannot chdir to $cwd"; |
187
|
|
|
|
|
|
|
|
188
|
|
|
|
|
|
|
return 1; |
189
|
|
|
|
|
|
|
}; |
190
|
|
|
|
|
|
|
|
191
|
1
|
|
|
1
|
|
12
|
no Moose; |
|
1
|
|
|
|
|
2
|
|
|
1
|
|
|
|
|
8
|
|
192
|
|
|
|
|
|
|
__PACKAGE__->meta->make_immutable; |
193
|
|
|
|
|
|
|
|
194
|
|
|
|
|
|
|
1; |