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#!/usr/bin/perl |
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# |
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# sql_to_db.pm |
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# Copyright (C) 2014 by John Heidemann |
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# $Id: dd1b62c899ec2f2f31abaa9131d4f053b42c038e $ |
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# |
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# This program is distributed under terms of the GNU general |
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# public license, version 2. See the file COPYING |
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# in $dblib for details. |
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# |
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package Fsdb::Filter::sqlselect_to_db; |
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=head1 NAME |
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sqlselect_to_db - convert MySQL or MariaDB selected tables to fsdb |
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=head1 SYNOPSIS |
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sqlselect_to_db dest.fsdb |
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=head1 DESCRIPTION |
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Converts a MySQL or MariaDB tables to Fsdb format. |
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The input is I fsdb. |
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The first non-box row is taken to be the names of the columns. |
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The output is two-space-separated fsdb. |
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(Someday more general field separators should be supported.) |
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=for comment |
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begin_standard_fsdb_options |
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This module also supports the standard fsdb options: |
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=over 4 |
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=item B<-d> |
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Enable debugging output. |
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=item B<-i> or B<--input> InputSource |
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Read from InputSource, typically a file name, or C<-> for standard input, |
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or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects. |
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=item B<-o> or B<--output> OutputDestination |
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Write to OutputDestination, typically a file name, or C<-> for standard output, |
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or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects. |
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=item B<--autorun> or B<--noautorun> |
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By default, programs process automatically, |
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but Fsdb::Filter objects in Perl do not run until you invoke |
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the run() method. |
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The C<--(no)autorun> option controls that behavior within Perl. |
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=item B<--help> |
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Show help. |
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=item B<--man> |
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Show full manual. |
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=back |
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=for comment |
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end_standard_fsdb_options |
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=head1 SAMPLE USAGE |
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=head2 Input: |
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+----------------+---------------+--------------------+------+-------------------------+ |
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| username | firstname | lastname | id | email | |
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+----------------+---------------+--------------------+------+-------------------------+ |
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| johnh | John | Heidemann | 134 | johnh@isi.edu | |
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+----------------+---------------+--------------------+------+-------------------------+ |
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1 row in set (0.01 sec) |
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=head2 Command: |
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sqlselect_to_db |
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=head2 Output: |
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#fsdb -F S username firstname lastname id email |
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johnh John Heidemann 134 johnh@isi.edu |
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# | sqlselect_to_db |
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=head1 SEE ALSO |
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L. |
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L. |
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=head1 CLASS FUNCTIONS |
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=cut |
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@ISA = qw(Fsdb::Filter); |
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$VERSION = 2.0; |
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use strict; |
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use Pod::Usage; |
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use Carp; |
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use Text::CSV_XS; |
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use Fsdb::Filter; |
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use Fsdb::IO::Writer; |
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=head2 new |
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$filter = new Fsdb::Filter::csv_to_db(@arguments); |
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Create a new csv_to_db object, taking command-line arguments. |
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=cut |
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sub new ($@) { |
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my $class = shift @_; |
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my $self = $class->SUPER::new(@_); |
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bless $self, $class; |
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$self->set_defaults; |
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$self->parse_options(@_); |
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$self->SUPER::post_new(); |
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return $self; |
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} |
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=head2 set_defaults |
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$filter->set_defaults(); |
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Internal: set up defaults. |
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=cut |
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sub set_defaults ($) { |
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my($self) = @_; |
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$self->SUPER::set_defaults(); |
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} |
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=head2 parse_options |
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$filter->parse_options(@ARGV); |
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Internal: parse command-line arguments. |
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=cut |
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sub parse_options ($@) { |
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my $self = shift @_; |
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my(@argv) = @_; |
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$self->get_options( |
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\@argv, |
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'help|?' => sub { pod2usage(1); }, |
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'man' => sub { pod2usage(-verbose => 2); }, |
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'autorun!' => \$self->{_autorun}, |
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'd|debug+' => \$self->{_debug}, |
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'i|input=s' => sub { $self->parse_io_option('input', @_); }, |
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'log!' => \$self->{_logprog}, |
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'o|output=s' => sub { $self->parse_io_option('output', @_); }, |
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) or pod2usage(2); |
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pod2usage(2) if ($#argv >= 0); |
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} |
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=head2 setup |
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$filter->setup(); |
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Internal: setup, parse headers. |
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=cut |
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185
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sub setup ($) { |
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my($self) = @_; |
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$self->finish_fh_io_option('input'); |
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$self->{_lineno} = 0; |
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my($header); |
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for (;;) { |
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$header = $self->{_in}->getline; |
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$self->{_lineno}++; |
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croak $self->{_prog} . ": cound not find header\n" |
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if (!defined($header)); |
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chomp($header); |
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last if ($header !~ /^[-+]+$/); |
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}; |
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my(@raw_columns) = split(/\|/, $header); |
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shift(@raw_columns); # REQUIRE leading | |
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#if ($raw_columns[0] eq ''); |
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my(@columns) = Fsdb::IO::clean_potential_columns(@raw_columns); |
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$self->finish_io_option('output', -fscode => 'S', -cols => \@columns); |
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} |
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207
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=head2 run |
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209
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$filter->run(); |
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Internal: run over each rows. |
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213
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=cut |
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sub run ($) { |
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0
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my($self) = @_; |
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my $write_fastpath_sub = $self->{_out}->fastpath_sub(); |
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219
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0
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for (;;) { |
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my $line = $self->{_in}->getline; |
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$self->{_lineno}++; |
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0
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last if (!defined($line)); |
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chomp $line; |
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next if ($line =~ /^[-+]+$/); |
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0
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0
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next if ($line =~ /\d+ rows? in set/); |
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my(@row) = split(/\|/, $line); |
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0
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shift(@row); # require leading | |
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0
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grep { s/^ +//g; } @row; |
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0
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229
|
0
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|
grep { s/ +$//g; } @row; |
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0
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230
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0
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|
grep { s/ +/ /g; } @row; # clean up for fsdb double-space separator |
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0
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231
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0
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grep { s/^ *$/-/g; } @row; # add null values for fields |
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0
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232
|
0
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|
&{$write_fastpath_sub}(\@row); |
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0
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233
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}; |
234
|
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} |
235
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236
|
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237
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=head1 AUTHOR and COPYRIGHT |
238
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239
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Copyright (C) 2014 by John Heidemann |
240
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241
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This program is distributed under terms of the GNU general |
242
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public license, version 2. See the file COPYING |
243
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with the distribution for details. |
244
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245
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=cut |
246
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247
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1; |