line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
#!/usr/bin/perl -w |
2
|
|
|
|
|
|
|
|
3
|
|
|
|
|
|
|
# |
4
|
|
|
|
|
|
|
# dbcolcopylast.pm |
5
|
|
|
|
|
|
|
# Copyright (C) 1991-2015 by John Heidemann |
6
|
|
|
|
|
|
|
# $Id: bb2670752517f9ec2870a2baf611c24b4da7a11d $ |
7
|
|
|
|
|
|
|
# |
8
|
|
|
|
|
|
|
# This program is distributed under terms of the GNU general |
9
|
|
|
|
|
|
|
# public license, version 2. See the file COPYING |
10
|
|
|
|
|
|
|
# in $dblibdir for details. |
11
|
|
|
|
|
|
|
# |
12
|
|
|
|
|
|
|
|
13
|
|
|
|
|
|
|
package Fsdb::Filter::dbcolcopylast; |
14
|
|
|
|
|
|
|
|
15
|
|
|
|
|
|
|
=head1 NAME |
16
|
|
|
|
|
|
|
|
17
|
|
|
|
|
|
|
dbcolcopylast - create new columns that are copies of prior columns |
18
|
|
|
|
|
|
|
|
19
|
|
|
|
|
|
|
=head1 SYNOPSIS |
20
|
|
|
|
|
|
|
|
21
|
|
|
|
|
|
|
dbcolcopylast [-e EMPTY] [column...] |
22
|
|
|
|
|
|
|
|
23
|
|
|
|
|
|
|
|
24
|
|
|
|
|
|
|
=head1 DESCRIPTION |
25
|
|
|
|
|
|
|
|
26
|
|
|
|
|
|
|
For each COLUMN, create a new column copylast_COLUMN |
27
|
|
|
|
|
|
|
that is the last value for that column---that is, |
28
|
|
|
|
|
|
|
the value of that column from the row before. |
29
|
|
|
|
|
|
|
|
30
|
|
|
|
|
|
|
|
31
|
|
|
|
|
|
|
=head1 OPTIONS |
32
|
|
|
|
|
|
|
|
33
|
|
|
|
|
|
|
=over 4 |
34
|
|
|
|
|
|
|
|
35
|
|
|
|
|
|
|
=item B<-e> EmptyValue or B<--empty> |
36
|
|
|
|
|
|
|
|
37
|
|
|
|
|
|
|
Specify the value newly created columns get. |
38
|
|
|
|
|
|
|
|
39
|
|
|
|
|
|
|
=back |
40
|
|
|
|
|
|
|
|
41
|
|
|
|
|
|
|
=for comment |
42
|
|
|
|
|
|
|
begin_standard_fsdb_options |
43
|
|
|
|
|
|
|
|
44
|
|
|
|
|
|
|
This module also supports the standard fsdb options: |
45
|
|
|
|
|
|
|
|
46
|
|
|
|
|
|
|
=over 4 |
47
|
|
|
|
|
|
|
|
48
|
|
|
|
|
|
|
=item B<-d> |
49
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
Enable debugging output. |
51
|
|
|
|
|
|
|
|
52
|
|
|
|
|
|
|
=item B<-i> or B<--input> InputSource |
53
|
|
|
|
|
|
|
|
54
|
|
|
|
|
|
|
Read from InputSource, typically a file name, or C<-> for standard input, |
55
|
|
|
|
|
|
|
or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects. |
56
|
|
|
|
|
|
|
|
57
|
|
|
|
|
|
|
=item B<-o> or B<--output> OutputDestination |
58
|
|
|
|
|
|
|
|
59
|
|
|
|
|
|
|
Write to OutputDestination, typically a file name, or C<-> for standard output, |
60
|
|
|
|
|
|
|
or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects. |
61
|
|
|
|
|
|
|
|
62
|
|
|
|
|
|
|
=item B<--autorun> or B<--noautorun> |
63
|
|
|
|
|
|
|
|
64
|
|
|
|
|
|
|
By default, programs process automatically, |
65
|
|
|
|
|
|
|
but Fsdb::Filter objects in Perl do not run until you invoke |
66
|
|
|
|
|
|
|
the run() method. |
67
|
|
|
|
|
|
|
The C<--(no)autorun> option controls that behavior within Perl. |
68
|
|
|
|
|
|
|
|
69
|
|
|
|
|
|
|
=item B<--help> |
70
|
|
|
|
|
|
|
|
71
|
|
|
|
|
|
|
Show help. |
72
|
|
|
|
|
|
|
|
73
|
|
|
|
|
|
|
=item B<--man> |
74
|
|
|
|
|
|
|
|
75
|
|
|
|
|
|
|
Show full manual. |
76
|
|
|
|
|
|
|
|
77
|
|
|
|
|
|
|
=back |
78
|
|
|
|
|
|
|
|
79
|
|
|
|
|
|
|
=for comment |
80
|
|
|
|
|
|
|
end_standard_fsdb_options |
81
|
|
|
|
|
|
|
|
82
|
|
|
|
|
|
|
|
83
|
|
|
|
|
|
|
=head1 SAMPLE USAGE |
84
|
|
|
|
|
|
|
|
85
|
|
|
|
|
|
|
=head2 Input: |
86
|
|
|
|
|
|
|
|
87
|
|
|
|
|
|
|
#fsdb test |
88
|
|
|
|
|
|
|
a |
89
|
|
|
|
|
|
|
b |
90
|
|
|
|
|
|
|
|
91
|
|
|
|
|
|
|
=head2 Command: |
92
|
|
|
|
|
|
|
|
93
|
|
|
|
|
|
|
cat data.fsdb | dbcolcopylast foo |
94
|
|
|
|
|
|
|
|
95
|
|
|
|
|
|
|
=head2 Output: |
96
|
|
|
|
|
|
|
|
97
|
|
|
|
|
|
|
#fsdb test foo |
98
|
|
|
|
|
|
|
a - |
99
|
|
|
|
|
|
|
b - |
100
|
|
|
|
|
|
|
|
101
|
|
|
|
|
|
|
|
102
|
|
|
|
|
|
|
=head1 SEE ALSO |
103
|
|
|
|
|
|
|
|
104
|
|
|
|
|
|
|
L. |
105
|
|
|
|
|
|
|
|
106
|
|
|
|
|
|
|
|
107
|
|
|
|
|
|
|
=head1 CLASS FUNCTIONS |
108
|
|
|
|
|
|
|
|
109
|
|
|
|
|
|
|
=cut |
110
|
|
|
|
|
|
|
|
111
|
|
|
|
|
|
|
@ISA = qw(Fsdb::Filter); |
112
|
|
|
|
|
|
|
($VERSION) = 2.0; |
113
|
|
|
|
|
|
|
|
114
|
1
|
|
|
1
|
|
3666
|
use strict; |
|
1
|
|
|
|
|
2
|
|
|
1
|
|
|
|
|
25
|
|
115
|
1
|
|
|
1
|
|
4
|
use Pod::Usage; |
|
1
|
|
|
|
|
1
|
|
|
1
|
|
|
|
|
65
|
|
116
|
1
|
|
|
1
|
|
4
|
use Carp; |
|
1
|
|
|
|
|
2
|
|
|
1
|
|
|
|
|
38
|
|
117
|
|
|
|
|
|
|
|
118
|
1
|
|
|
1
|
|
3
|
use Fsdb::Filter; |
|
1
|
|
|
|
|
1
|
|
|
1
|
|
|
|
|
20
|
|
119
|
1
|
|
|
1
|
|
5
|
use Fsdb::IO::Reader; |
|
1
|
|
|
|
|
1
|
|
|
1
|
|
|
|
|
17
|
|
120
|
1
|
|
|
1
|
|
4
|
use Fsdb::IO::Writer; |
|
1
|
|
|
|
|
0
|
|
|
1
|
|
|
|
|
513
|
|
121
|
|
|
|
|
|
|
|
122
|
|
|
|
|
|
|
|
123
|
|
|
|
|
|
|
=head2 new |
124
|
|
|
|
|
|
|
|
125
|
|
|
|
|
|
|
$filter = new Fsdb::Filter::dbcolcopylast(@arguments); |
126
|
|
|
|
|
|
|
|
127
|
|
|
|
|
|
|
Create a new dbcolcopylast object, taking command-line arguments. |
128
|
|
|
|
|
|
|
|
129
|
|
|
|
|
|
|
=cut |
130
|
|
|
|
|
|
|
|
131
|
|
|
|
|
|
|
sub new ($@) { |
132
|
0
|
|
|
0
|
1
|
|
my $class = shift @_; |
133
|
0
|
|
|
|
|
|
my $self = $class->SUPER::new(@_); |
134
|
0
|
|
|
|
|
|
bless $self, $class; |
135
|
0
|
|
|
|
|
|
$self->set_defaults; |
136
|
0
|
|
|
|
|
|
$self->parse_options(@_); |
137
|
0
|
|
|
|
|
|
$self->SUPER::post_new(); |
138
|
0
|
|
|
|
|
|
return $self; |
139
|
|
|
|
|
|
|
} |
140
|
|
|
|
|
|
|
|
141
|
|
|
|
|
|
|
|
142
|
|
|
|
|
|
|
=head2 set_defaults |
143
|
|
|
|
|
|
|
|
144
|
|
|
|
|
|
|
$filter->set_defaults(); |
145
|
|
|
|
|
|
|
|
146
|
|
|
|
|
|
|
Internal: set up defaults. |
147
|
|
|
|
|
|
|
|
148
|
|
|
|
|
|
|
=cut |
149
|
|
|
|
|
|
|
|
150
|
|
|
|
|
|
|
sub set_defaults ($) { |
151
|
0
|
|
|
0
|
1
|
|
my($self) = @_; |
152
|
0
|
|
|
|
|
|
$self->SUPER::set_defaults(); |
153
|
0
|
|
|
|
|
|
$self->{_copy_cols} = []; |
154
|
|
|
|
|
|
|
} |
155
|
|
|
|
|
|
|
|
156
|
|
|
|
|
|
|
=head2 parse_options |
157
|
|
|
|
|
|
|
|
158
|
|
|
|
|
|
|
$filter->parse_options(@ARGV); |
159
|
|
|
|
|
|
|
|
160
|
|
|
|
|
|
|
Internal: parse command-line arguments. |
161
|
|
|
|
|
|
|
|
162
|
|
|
|
|
|
|
=cut |
163
|
|
|
|
|
|
|
|
164
|
|
|
|
|
|
|
sub parse_options ($@) { |
165
|
0
|
|
|
0
|
1
|
|
my $self = shift @_; |
166
|
|
|
|
|
|
|
|
167
|
0
|
|
|
|
|
|
my(@argv) = @_; |
168
|
|
|
|
|
|
|
$self->get_options( |
169
|
|
|
|
|
|
|
\@argv, |
170
|
0
|
|
|
0
|
|
|
'help|?' => sub { pod2usage(1); }, |
171
|
0
|
|
|
0
|
|
|
'man' => sub { pod2usage(-verbose => 2); }, |
172
|
|
|
|
|
|
|
'autorun!' => \$self->{_autorun}, |
173
|
|
|
|
|
|
|
'close!' => \$self->{_close}, |
174
|
|
|
|
|
|
|
'd|debug+' => \$self->{_debug}, |
175
|
|
|
|
|
|
|
'e|empty=s' => \$self->{_empty}, |
176
|
0
|
|
|
0
|
|
|
'i|input=s' => sub { $self->parse_io_option('input', @_); }, |
177
|
|
|
|
|
|
|
'log!' => \$self->{_logprog}, |
178
|
0
|
|
|
0
|
|
|
'o|output=s' => sub { $self->parse_io_option('output', @_); }, |
179
|
0
|
0
|
|
|
|
|
) or pod2usage(2); |
180
|
0
|
|
|
|
|
|
push (@{$self->{_copy_cols}}, @argv); |
|
0
|
|
|
|
|
|
|
181
|
|
|
|
|
|
|
} |
182
|
|
|
|
|
|
|
|
183
|
|
|
|
|
|
|
=head2 setup |
184
|
|
|
|
|
|
|
|
185
|
|
|
|
|
|
|
$filter->setup(); |
186
|
|
|
|
|
|
|
|
187
|
|
|
|
|
|
|
Internal: setup, parse headers. |
188
|
|
|
|
|
|
|
|
189
|
|
|
|
|
|
|
=cut |
190
|
|
|
|
|
|
|
|
191
|
|
|
|
|
|
|
sub setup ($) { |
192
|
0
|
|
|
0
|
1
|
|
my($self) = @_; |
193
|
|
|
|
|
|
|
|
194
|
0
|
|
|
|
|
|
$self->finish_io_option('input', -comment_handler => $self->create_pass_comments_sub); |
195
|
0
|
|
|
|
|
|
$self->finish_io_option('output', -clone => $self->{_in}, -outputheader => 'delay'); |
196
|
|
|
|
|
|
|
|
197
|
0
|
|
|
|
|
|
my $init_code = ''; |
198
|
0
|
|
|
|
|
|
my $copy_code = ''; |
199
|
0
|
|
|
|
|
|
foreach (@{$self->{_copy_cols}}) { |
|
0
|
|
|
|
|
|
|
200
|
0
|
|
|
|
|
|
my($source_coli) = $self->{_in}->col_to_i($_); |
201
|
0
|
0
|
|
|
|
|
croak $self->{_prog} . ": attempt to copy non-existing column $_.\n" |
202
|
|
|
|
|
|
|
if (!defined($source_coli)); |
203
|
|
|
|
|
|
|
|
204
|
0
|
|
|
|
|
|
my($dest_col) = "copylast_" . $_; |
205
|
|
|
|
|
|
|
$self->{_out}->col_create($dest_col) |
206
|
0
|
0
|
|
|
|
|
or croak $self->{_prog} . ": cannot create column '$dest_col' (maybe it already existed?)\n"; |
207
|
0
|
|
|
|
|
|
my($dest_coli) = $self->{_out}->col_to_i($dest_col); |
208
|
|
|
|
|
|
|
|
209
|
0
|
|
|
|
|
|
$init_code .= '$lfref->[' . $source_coli . '] = $empty;' . "\n"; |
210
|
0
|
|
|
|
|
|
$copy_code .= '$fref->[' . $dest_coli . '] = $lfref->[' . $source_coli . '];' . "\n"; |
211
|
|
|
|
|
|
|
}; |
212
|
|
|
|
|
|
|
|
213
|
|
|
|
|
|
|
# |
214
|
|
|
|
|
|
|
# write the loop |
215
|
|
|
|
|
|
|
# |
216
|
|
|
|
|
|
|
{ |
217
|
0
|
|
|
|
|
|
my $loop_sub; |
|
0
|
|
|
|
|
|
|
218
|
0
|
|
|
|
|
|
my $read_fastpath_sub = $self->{_in}->fastpath_sub(); |
219
|
0
|
|
|
|
|
|
my $write_fastpath_sub = $self->{_out}->fastpath_sub(); |
220
|
0
|
|
|
|
|
|
my $empty = $self->{_empty}; |
221
|
0
|
|
|
|
|
|
my $loop_sub_code = q' |
222
|
|
|
|
|
|
|
$loop_sub = sub { |
223
|
|
|
|
|
|
|
my $fref; |
224
|
|
|
|
|
|
|
my $lfref; |
225
|
|
|
|
|
|
|
' . $init_code . q' |
226
|
|
|
|
|
|
|
while ($fref = &$read_fastpath_sub()) { |
227
|
|
|
|
|
|
|
' . $copy_code . q' |
228
|
|
|
|
|
|
|
&$write_fastpath_sub($fref); |
229
|
|
|
|
|
|
|
$lfref = $fref; # save for next pass |
230
|
|
|
|
|
|
|
}; |
231
|
|
|
|
|
|
|
}; |
232
|
|
|
|
|
|
|
'; |
233
|
0
|
0
|
|
|
|
|
print $loop_sub_code if ($self->{_debug}); |
234
|
0
|
|
|
|
|
|
eval $loop_sub_code; |
235
|
0
|
0
|
|
|
|
|
$@ && die $self->{_prog} . ": internal eval error: $@.\n"; |
236
|
0
|
|
|
|
|
|
$self->{_loop_sub} = $loop_sub; |
237
|
|
|
|
|
|
|
} |
238
|
|
|
|
|
|
|
} |
239
|
|
|
|
|
|
|
|
240
|
|
|
|
|
|
|
|
241
|
|
|
|
|
|
|
=head2 run |
242
|
|
|
|
|
|
|
|
243
|
|
|
|
|
|
|
$filter->run(); |
244
|
|
|
|
|
|
|
|
245
|
|
|
|
|
|
|
Internal: run over each rows. |
246
|
|
|
|
|
|
|
|
247
|
|
|
|
|
|
|
=cut |
248
|
|
|
|
|
|
|
sub run ($) { |
249
|
0
|
|
|
0
|
1
|
|
my($self) = @_; |
250
|
0
|
|
|
|
|
|
&{$self->{_loop_sub}}(); |
|
0
|
|
|
|
|
|
|
251
|
|
|
|
|
|
|
} |
252
|
|
|
|
|
|
|
|
253
|
|
|
|
|
|
|
|
254
|
|
|
|
|
|
|
=head1 AUTHOR and COPYRIGHT |
255
|
|
|
|
|
|
|
|
256
|
|
|
|
|
|
|
Copyright (C) 1991-2015 by John Heidemann |
257
|
|
|
|
|
|
|
|
258
|
|
|
|
|
|
|
This program is distributed under terms of the GNU general |
259
|
|
|
|
|
|
|
public license, version 2. See the file COPYING |
260
|
|
|
|
|
|
|
with the distribution for details. |
261
|
|
|
|
|
|
|
|
262
|
|
|
|
|
|
|
=cut |
263
|
|
|
|
|
|
|
|
264
|
|
|
|
|
|
|
1; |