Branch Coverage

blib/lib/FASTX/ScriptHelper.pm
Criterion Covered Total %
branch 13 56 23.2


line true false branch
40 0 3 unless $accepted_parameters{$parameter}
52 1 0 if (defined $self->{'logfile'})
67 0 0 if (ref $_[0] eq 'FASTX::ScriptHelper')
72 0 0 unless defined $seq
74 0 0 if (defined $comment)
79 0 0 if ($self) { }
90 0 0 if (ref $_[0] eq 'FASTX::ScriptHelper')
95 0 0 if (defined $comment)
98 0 0 unless defined $qual
100 0 0 if ($self) { }
111 1 0 if (ref $_[0] eq 'FASTX::ScriptHelper')
115 1 0 if (is_seq($sequence))
124 0 1 if (ref $_[0] eq 'FASTX::ScriptHelper')
128 0 1 if ($string =~ /[^ACGTRYSWKMBDHVN]/iu) { }
138 0 0 if (ref $_[0] eq 'FASTX::ScriptHelper')
142 0 0 unless $input_string
146 0 0 unless $line_width
157 1 0 if (ref $_[0] eq 'FASTX::ScriptHelper')
163 1 0 if (defined $self and $self->{'verbose'} or defined $main::opt_verbose and $main::opt_verbose) { }
164 0 1 if (defined $self->{'do_log'})
166 0 0 if defined $reference
170 0 1 if defined $reference
180 1 0 if (ref $_[0] eq 'FASTX::ScriptHelper')
188 0 1 if ($cmd->{'exit'})
190 0 0 unless ($options->{'candie'})
201 0 0 if (ref $_[0] eq 'FASTX::ScriptHelper')
206 0 0 if (defined $self and $self->{'do_log'})
222 0 1 if (ref $_[0] eq 'FASTX::ScriptHelper')