| line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
|
1
|
|
|
|
|
|
|
# You may distribute under the terms of either the GNU General Public License |
|
2
|
|
|
|
|
|
|
# or the Artistic License (the same terms as Perl itself) |
|
3
|
|
|
|
|
|
|
# |
|
4
|
|
|
|
|
|
|
# (C) Paul Evans, 2014-2016 -- leonerd@leonerd.org.uk |
|
5
|
|
|
|
|
|
|
|
|
6
|
|
|
|
|
|
|
package Devel::MAT::Graph 0.49; |
|
7
|
|
|
|
|
|
|
|
|
8
|
9
|
|
|
9
|
|
108
|
use v5.14; |
|
|
9
|
|
|
|
|
27
|
|
|
9
|
9
|
|
|
9
|
|
39
|
use warnings; |
|
|
9
|
|
|
|
|
13
|
|
|
|
9
|
|
|
|
|
351
|
|
|
10
|
|
|
|
|
|
|
|
|
11
|
9
|
|
|
9
|
|
43
|
use Struct::Dumb 0.07 'readonly_struct'; |
|
|
9
|
|
|
|
|
121
|
|
|
|
9
|
|
|
|
|
46
|
|
|
12
|
|
|
|
|
|
|
|
|
13
|
|
|
|
|
|
|
=head1 NAME |
|
14
|
|
|
|
|
|
|
|
|
15
|
|
|
|
|
|
|
C - a set of references between related SVs |
|
16
|
|
|
|
|
|
|
|
|
17
|
|
|
|
|
|
|
=head1 DESCRIPTION |
|
18
|
|
|
|
|
|
|
|
|
19
|
|
|
|
|
|
|
Instances of this class represent an entire graph of references between |
|
20
|
|
|
|
|
|
|
related SVs, as a helper method for return values from various L |
|
21
|
|
|
|
|
|
|
methods, which might be used for some sort of screen layout or other analysis |
|
22
|
|
|
|
|
|
|
tasks. |
|
23
|
|
|
|
|
|
|
|
|
24
|
|
|
|
|
|
|
=cut |
|
25
|
|
|
|
|
|
|
|
|
26
|
|
|
|
|
|
|
=head1 CONSTRUCTOR |
|
27
|
|
|
|
|
|
|
|
|
28
|
|
|
|
|
|
|
=cut |
|
29
|
|
|
|
|
|
|
|
|
30
|
|
|
|
|
|
|
=head2 new |
|
31
|
|
|
|
|
|
|
|
|
32
|
|
|
|
|
|
|
$graph = Devel::MAT::Graph->new( $dumpfile ) |
|
33
|
|
|
|
|
|
|
|
|
34
|
|
|
|
|
|
|
Constructs a new C instance backed by the given dumpfile |
|
35
|
|
|
|
|
|
|
(which is only actually used to make the C<< $node->sv >> method work). |
|
36
|
|
|
|
|
|
|
|
|
37
|
|
|
|
|
|
|
=cut |
|
38
|
|
|
|
|
|
|
|
|
39
|
|
|
|
|
|
|
sub new |
|
40
|
|
|
|
|
|
|
{ |
|
41
|
2
|
|
|
2
|
1
|
6
|
my $class = shift; |
|
42
|
2
|
|
|
|
|
6
|
my ( $df ) = @_; |
|
43
|
|
|
|
|
|
|
|
|
44
|
2
|
|
|
|
|
21
|
bless { |
|
45
|
|
|
|
|
|
|
df => $df, |
|
46
|
|
|
|
|
|
|
|
|
47
|
|
|
|
|
|
|
edges_from => {}, |
|
48
|
|
|
|
|
|
|
edges_to => {}, |
|
49
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
roots_from => {}, |
|
51
|
|
|
|
|
|
|
}, $class; |
|
52
|
|
|
|
|
|
|
} |
|
53
|
|
|
|
|
|
|
|
|
54
|
|
|
|
|
|
|
=head1 MUTATION METHODS |
|
55
|
|
|
|
|
|
|
|
|
56
|
|
|
|
|
|
|
=cut |
|
57
|
|
|
|
|
|
|
|
|
58
|
|
|
|
|
|
|
=head2 add_sv |
|
59
|
|
|
|
|
|
|
|
|
60
|
|
|
|
|
|
|
$graph->add_sv( $sv ) |
|
61
|
|
|
|
|
|
|
|
|
62
|
|
|
|
|
|
|
Makes the graph aware of the given L. This is not strictly |
|
63
|
|
|
|
|
|
|
necessary before calling C or C, but ensures that C |
|
64
|
|
|
|
|
|
|
will return true immediately after it, and so can be used as a sentinel for |
|
65
|
|
|
|
|
|
|
recursion control. |
|
66
|
|
|
|
|
|
|
|
|
67
|
|
|
|
|
|
|
=cut |
|
68
|
|
|
|
|
|
|
|
|
69
|
|
|
|
|
|
|
sub add_sv |
|
70
|
|
|
|
|
|
|
{ |
|
71
|
6767
|
|
|
6767
|
1
|
22405
|
my $self = shift; |
|
72
|
6767
|
|
|
|
|
10359
|
my ( $sv ) = @_; |
|
73
|
|
|
|
|
|
|
|
|
74
|
6767
|
|
100
|
|
|
31868
|
$self->{edges_from}{$sv->addr} ||= []; |
|
75
|
|
|
|
|
|
|
|
|
76
|
6767
|
|
|
|
|
12365
|
return $self; |
|
77
|
|
|
|
|
|
|
} |
|
78
|
|
|
|
|
|
|
|
|
79
|
|
|
|
|
|
|
=head2 add_ref |
|
80
|
|
|
|
|
|
|
|
|
81
|
|
|
|
|
|
|
$graph->add_ref( $from_sv, $to_sv, $desc ) |
|
82
|
|
|
|
|
|
|
|
|
83
|
|
|
|
|
|
|
Adds an edge to the graph, from and to the given SVs, with the given |
|
84
|
|
|
|
|
|
|
description. |
|
85
|
|
|
|
|
|
|
|
|
86
|
|
|
|
|
|
|
=cut |
|
87
|
|
|
|
|
|
|
|
|
88
|
|
|
|
|
|
|
sub add_ref |
|
89
|
|
|
|
|
|
|
{ |
|
90
|
8461
|
|
|
8461
|
1
|
35322
|
my $self = shift; |
|
91
|
8461
|
|
|
|
|
13316
|
my ( $from_sv, $to_sv, $desc ) = @_; |
|
92
|
|
|
|
|
|
|
|
|
93
|
8461
|
|
|
|
|
14146
|
my $from_addr = $from_sv->addr; |
|
94
|
8461
|
|
|
|
|
13539
|
my $to_addr = $to_sv->addr; |
|
95
|
|
|
|
|
|
|
|
|
96
|
8461
|
|
|
|
|
9866
|
push @{ $self->{edges_from}{$from_addr} }, [ $to_addr, $desc ]; |
|
|
8461
|
|
|
|
|
45516
|
|
|
97
|
8461
|
|
|
|
|
10808
|
push @{ $self->{edges_to} {$to_addr} }, [ $from_addr, $desc ]; |
|
|
8461
|
|
|
|
|
27635
|
|
|
98
|
|
|
|
|
|
|
|
|
99
|
8461
|
|
|
|
|
20719
|
return $self; |
|
100
|
|
|
|
|
|
|
} |
|
101
|
|
|
|
|
|
|
|
|
102
|
|
|
|
|
|
|
=head2 add_root |
|
103
|
|
|
|
|
|
|
|
|
104
|
|
|
|
|
|
|
$graph->add_root( $from_sv, $desc ) |
|
105
|
|
|
|
|
|
|
|
|
106
|
|
|
|
|
|
|
Adds a root edge to the graph, at the given SV with the given description. |
|
107
|
|
|
|
|
|
|
|
|
108
|
|
|
|
|
|
|
=cut |
|
109
|
|
|
|
|
|
|
|
|
110
|
|
|
|
|
|
|
sub add_root |
|
111
|
|
|
|
|
|
|
{ |
|
112
|
1684
|
|
|
1684
|
1
|
3673
|
my $self = shift; |
|
113
|
1684
|
|
|
|
|
4437
|
my ( $from_sv, $desc ) = @_; |
|
114
|
|
|
|
|
|
|
|
|
115
|
1684
|
|
|
|
|
3806
|
push @{ $self->{roots_from}{$from_sv->addr} }, $desc; |
|
|
1684
|
|
|
|
|
16031
|
|
|
116
|
|
|
|
|
|
|
|
|
117
|
1684
|
|
|
|
|
4214
|
return $self; |
|
118
|
|
|
|
|
|
|
} |
|
119
|
|
|
|
|
|
|
|
|
120
|
|
|
|
|
|
|
=head1 QUERY METHODS |
|
121
|
|
|
|
|
|
|
|
|
122
|
|
|
|
|
|
|
=cut |
|
123
|
|
|
|
|
|
|
|
|
124
|
|
|
|
|
|
|
=head2 has_sv |
|
125
|
|
|
|
|
|
|
|
|
126
|
|
|
|
|
|
|
$bool = $graph->has_sv( $sv ) |
|
127
|
|
|
|
|
|
|
|
|
128
|
|
|
|
|
|
|
Returns true if the graph has edges or roots for the given SV, or it has at |
|
129
|
|
|
|
|
|
|
least been given to C. |
|
130
|
|
|
|
|
|
|
|
|
131
|
|
|
|
|
|
|
=cut |
|
132
|
|
|
|
|
|
|
|
|
133
|
|
|
|
|
|
|
sub has_sv |
|
134
|
|
|
|
|
|
|
{ |
|
135
|
8461
|
|
|
8461
|
1
|
36775
|
my $self = shift; |
|
136
|
8461
|
|
|
|
|
13923
|
my ( $sv ) = @_; |
|
137
|
|
|
|
|
|
|
|
|
138
|
8461
|
|
|
|
|
27022
|
my $addr = $sv->addr; |
|
139
|
|
|
|
|
|
|
|
|
140
|
|
|
|
|
|
|
return !!( $self->{edges_from}{$addr} || |
|
141
|
|
|
|
|
|
|
$self->{edges_to} {$addr} || |
|
142
|
8461
|
|
33
|
|
|
50380
|
$self->{roots_from}{$addr} ); |
|
143
|
|
|
|
|
|
|
} |
|
144
|
|
|
|
|
|
|
|
|
145
|
|
|
|
|
|
|
=head2 get_sv_node |
|
146
|
|
|
|
|
|
|
|
|
147
|
|
|
|
|
|
|
$node = $graph->get_sv_node( $sv ) |
|
148
|
|
|
|
|
|
|
|
|
149
|
|
|
|
|
|
|
Returns a C object for the given SV. |
|
150
|
|
|
|
|
|
|
|
|
151
|
|
|
|
|
|
|
=cut |
|
152
|
|
|
|
|
|
|
|
|
153
|
|
|
|
|
|
|
sub get_sv_node |
|
154
|
|
|
|
|
|
|
{ |
|
155
|
3385
|
|
|
3385
|
1
|
6177
|
my $self = shift; |
|
156
|
3385
|
|
|
|
|
5711
|
my ( $sv ) = @_; |
|
157
|
|
|
|
|
|
|
|
|
158
|
3385
|
50
|
|
|
|
12255
|
my $addr = ref $sv ? $sv->addr : $sv; |
|
159
|
|
|
|
|
|
|
|
|
160
|
3385
|
|
|
|
|
10706
|
return Devel::MAT::Graph::Node->new( |
|
161
|
|
|
|
|
|
|
graph => $self, |
|
162
|
|
|
|
|
|
|
addr => $addr, |
|
163
|
|
|
|
|
|
|
); |
|
164
|
|
|
|
|
|
|
} |
|
165
|
|
|
|
|
|
|
|
|
166
|
|
|
|
|
|
|
=head2 get_root_nodes |
|
167
|
|
|
|
|
|
|
|
|
168
|
|
|
|
|
|
|
@desc_nodes = $graph->get_root_nodes |
|
169
|
|
|
|
|
|
|
|
|
170
|
|
|
|
|
|
|
Returns an even-sized list of pairs, containing root descriptions and the |
|
171
|
|
|
|
|
|
|
nodes having those roots, in no particular order. |
|
172
|
|
|
|
|
|
|
|
|
173
|
|
|
|
|
|
|
=cut |
|
174
|
|
|
|
|
|
|
|
|
175
|
|
|
|
|
|
|
sub get_root_nodes |
|
176
|
|
|
|
|
|
|
{ |
|
177
|
0
|
|
|
0
|
1
|
0
|
my $self = shift; |
|
178
|
|
|
|
|
|
|
return map { |
|
179
|
0
|
|
|
|
|
0
|
my $node = $self->get_sv_node( $_ ); |
|
180
|
0
|
|
|
|
|
0
|
map { $_, $node } @{ $self->{roots_from}{$_} } |
|
|
0
|
|
|
|
|
0
|
|
|
|
0
|
|
|
|
|
0
|
|
|
181
|
0
|
|
|
|
|
0
|
} keys %{ $self->{roots_from} }; |
|
|
0
|
|
|
|
|
0
|
|
|
182
|
|
|
|
|
|
|
} |
|
183
|
|
|
|
|
|
|
|
|
184
|
|
|
|
|
|
|
package Devel::MAT::Graph::Node 0.49; |
|
185
|
|
|
|
|
|
|
|
|
186
|
|
|
|
|
|
|
=head1 NODE OBJECTS |
|
187
|
|
|
|
|
|
|
|
|
188
|
|
|
|
|
|
|
The values returned by C respond to the following methods: |
|
189
|
|
|
|
|
|
|
|
|
190
|
|
|
|
|
|
|
=cut |
|
191
|
|
|
|
|
|
|
|
|
192
|
3413
|
|
|
3413
|
|
6085
|
sub new { my $class = shift; bless { @_ }, $class } |
|
|
3413
|
|
|
|
|
24496
|
|
|
193
|
|
|
|
|
|
|
|
|
194
|
|
|
|
|
|
|
=head2 graph |
|
195
|
|
|
|
|
|
|
|
|
196
|
|
|
|
|
|
|
$graph = $node->graph |
|
197
|
|
|
|
|
|
|
|
|
198
|
|
|
|
|
|
|
Returns the containing C instance. |
|
199
|
|
|
|
|
|
|
|
|
200
|
|
|
|
|
|
|
=head2 addr |
|
201
|
|
|
|
|
|
|
|
|
202
|
|
|
|
|
|
|
$addr = $node->addr |
|
203
|
|
|
|
|
|
|
|
|
204
|
|
|
|
|
|
|
Returns the address of the SV represented by this node. |
|
205
|
|
|
|
|
|
|
|
|
206
|
|
|
|
|
|
|
=cut |
|
207
|
|
|
|
|
|
|
|
|
208
|
53
|
|
|
53
|
|
118
|
sub graph { $_[0]->{graph} } |
|
209
|
34
|
|
|
34
|
|
125
|
sub addr { $_[0]->{addr} } |
|
210
|
|
|
|
|
|
|
|
|
211
|
|
|
|
|
|
|
=head2 sv |
|
212
|
|
|
|
|
|
|
|
|
213
|
|
|
|
|
|
|
$sv = $node->sv |
|
214
|
|
|
|
|
|
|
|
|
215
|
|
|
|
|
|
|
Returns the SV object itself, as taken from the dumpfile instance. |
|
216
|
|
|
|
|
|
|
|
|
217
|
|
|
|
|
|
|
=cut |
|
218
|
|
|
|
|
|
|
|
|
219
|
6
|
|
|
6
|
|
845
|
sub sv { $_[0]->graph->{df}->sv_at( $_[0]->addr ) } |
|
220
|
|
|
|
|
|
|
|
|
221
|
|
|
|
|
|
|
=head2 roots |
|
222
|
|
|
|
|
|
|
|
|
223
|
|
|
|
|
|
|
@roots = $node->roots |
|
224
|
|
|
|
|
|
|
|
|
225
|
|
|
|
|
|
|
Returns any root descriptions given (by calls to C<< $graph->add_root >> for |
|
226
|
|
|
|
|
|
|
the SV at this node. |
|
227
|
|
|
|
|
|
|
|
|
228
|
|
|
|
|
|
|
$graph->add_root( $sv, $desc ); |
|
229
|
|
|
|
|
|
|
|
|
230
|
|
|
|
|
|
|
( $desc, ... ) = $graph->get_sv_node( $sv )->roots |
|
231
|
|
|
|
|
|
|
|
|
232
|
|
|
|
|
|
|
=cut |
|
233
|
|
|
|
|
|
|
|
|
234
|
|
|
|
|
|
|
sub roots |
|
235
|
|
|
|
|
|
|
{ |
|
236
|
8
|
|
|
8
|
|
13
|
my $self = shift; |
|
237
|
8
|
|
100
|
|
|
12
|
return @{ $self->graph->{roots_from}{$self->addr} // [] }; |
|
|
8
|
|
|
|
|
19
|
|
|
238
|
|
|
|
|
|
|
} |
|
239
|
|
|
|
|
|
|
|
|
240
|
|
|
|
|
|
|
=head2 edges_out |
|
241
|
|
|
|
|
|
|
|
|
242
|
|
|
|
|
|
|
@edges = $node->edges_out |
|
243
|
|
|
|
|
|
|
|
|
244
|
|
|
|
|
|
|
Returns an even-sized list of any edge descriptions and more C objects |
|
245
|
|
|
|
|
|
|
given as references (by calls to C<< $graph->add_ref >>) from the SV at this |
|
246
|
|
|
|
|
|
|
node. |
|
247
|
|
|
|
|
|
|
|
|
248
|
|
|
|
|
|
|
$graph->add_ref( $from_sv, $to_sv, $desc ) |
|
249
|
|
|
|
|
|
|
|
|
250
|
|
|
|
|
|
|
( $desc, $to_edge, ... ) = $graph->get_sv_node( $from_sv )->edges_out |
|
251
|
|
|
|
|
|
|
|
|
252
|
|
|
|
|
|
|
=head2 edges_out (scalar) |
|
253
|
|
|
|
|
|
|
|
|
254
|
|
|
|
|
|
|
$n_edges = $node->edges_out |
|
255
|
|
|
|
|
|
|
|
|
256
|
|
|
|
|
|
|
In scalar context, returns the I that exist; i.e. half the |
|
257
|
|
|
|
|
|
|
size of the pairlist that would be returned in list context. |
|
258
|
|
|
|
|
|
|
|
|
259
|
|
|
|
|
|
|
=cut |
|
260
|
|
|
|
|
|
|
|
|
261
|
|
|
|
|
|
|
sub edges_out |
|
262
|
|
|
|
|
|
|
{ |
|
263
|
4
|
|
|
4
|
|
7
|
my $self = shift; |
|
264
|
|
|
|
|
|
|
|
|
265
|
4
|
50
|
|
|
|
6
|
return unless my $edges = $self->graph->{edges_from}{$self->addr}; |
|
266
|
4
|
50
|
|
|
|
19
|
return scalar @$edges unless wantarray; |
|
267
|
|
|
|
|
|
|
return map { |
|
268
|
0
|
|
|
|
|
0
|
$_->[1], ( ref $self )->new( graph => $self->graph, addr => $_->[0] ) |
|
|
0
|
|
|
|
|
0
|
|
|
269
|
|
|
|
|
|
|
} @$edges; |
|
270
|
|
|
|
|
|
|
} |
|
271
|
|
|
|
|
|
|
|
|
272
|
|
|
|
|
|
|
=head2 edges_in |
|
273
|
|
|
|
|
|
|
|
|
274
|
|
|
|
|
|
|
@edges = $node->edges_in |
|
275
|
|
|
|
|
|
|
|
|
276
|
|
|
|
|
|
|
Similar to C, but returns edges in the opposite direction; i.e. |
|
277
|
|
|
|
|
|
|
edges of references to this node. |
|
278
|
|
|
|
|
|
|
|
|
279
|
|
|
|
|
|
|
$graph->add_ref( $from_sv, $to_sv, $desc ) |
|
280
|
|
|
|
|
|
|
|
|
281
|
|
|
|
|
|
|
( $desc, $from_edge, ... ) = $graph->get_sv_node( $to_sv )->edges_in |
|
282
|
|
|
|
|
|
|
|
|
283
|
|
|
|
|
|
|
=head2 edges_in (scalar) |
|
284
|
|
|
|
|
|
|
|
|
285
|
|
|
|
|
|
|
$n_edges = $node->edges_out |
|
286
|
|
|
|
|
|
|
|
|
287
|
|
|
|
|
|
|
In scalar context, returns the I that exist; i.e. half the |
|
288
|
|
|
|
|
|
|
size of the pairlist that would be returned in list context. |
|
289
|
|
|
|
|
|
|
|
|
290
|
|
|
|
|
|
|
=cut |
|
291
|
|
|
|
|
|
|
|
|
292
|
|
|
|
|
|
|
sub edges_in |
|
293
|
|
|
|
|
|
|
{ |
|
294
|
7
|
|
|
7
|
|
1290
|
my $self = shift; |
|
295
|
|
|
|
|
|
|
|
|
296
|
7
|
100
|
|
|
|
17
|
return unless my $edges = $self->graph->{edges_to}{$self->addr}; |
|
297
|
6
|
50
|
|
|
|
20
|
return scalar @$edges unless wantarray; |
|
298
|
|
|
|
|
|
|
return map { |
|
299
|
6
|
|
|
|
|
15
|
$_->[1], ( ref $self )->new( graph => $self->graph, addr => $_->[0] ) |
|
|
28
|
|
|
|
|
62
|
|
|
300
|
|
|
|
|
|
|
} @$edges; |
|
301
|
|
|
|
|
|
|
} |
|
302
|
|
|
|
|
|
|
|
|
303
|
|
|
|
|
|
|
=head1 AUTHOR |
|
304
|
|
|
|
|
|
|
|
|
305
|
|
|
|
|
|
|
Paul Evans |
|
306
|
|
|
|
|
|
|
|
|
307
|
|
|
|
|
|
|
=cut |
|
308
|
|
|
|
|
|
|
|
|
309
|
|
|
|
|
|
|
0x55AA; |