line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
# Data::Hopen::G::DAG - hopen build graph |
2
|
|
|
|
|
|
|
package Data::Hopen::G::DAG; |
3
|
8
|
|
|
8
|
|
1365
|
use strict; |
|
8
|
|
|
|
|
18
|
|
|
8
|
|
|
|
|
257
|
|
4
|
8
|
|
|
8
|
|
45
|
use Data::Hopen::Base; |
|
8
|
|
|
|
|
18
|
|
|
8
|
|
|
|
|
62
|
|
5
|
|
|
|
|
|
|
|
6
|
|
|
|
|
|
|
our $VERSION = '0.000019'; |
7
|
|
|
|
|
|
|
|
8
|
8
|
|
|
8
|
|
2095
|
use parent 'Data::Hopen::G::Op'; |
|
8
|
|
|
|
|
19
|
|
|
8
|
|
|
|
|
55
|
|
9
|
|
|
|
|
|
|
use Class::Tiny { |
10
|
14
|
|
|
|
|
143
|
goals => sub { [] }, |
11
|
8
|
|
|
|
|
91
|
default_goal => undef, |
12
|
|
|
|
|
|
|
winner => undef, |
13
|
|
|
|
|
|
|
|
14
|
|
|
|
|
|
|
# Private attributes with simple defaults |
15
|
|
|
|
|
|
|
#_node_by_name => sub { +{} }, # map from node names to nodes in either |
16
|
|
|
|
|
|
|
# # _init_graph or _graph |
17
|
|
|
|
|
|
|
|
18
|
|
|
|
|
|
|
# Private attributes - initialized by BUILD() |
19
|
|
|
|
|
|
|
_graph => undef, # L instance |
20
|
|
|
|
|
|
|
_final => undef, # The graph sink - all goals have edges to this |
21
|
|
|
|
|
|
|
|
22
|
|
|
|
|
|
|
#Initialization operations |
23
|
|
|
|
|
|
|
_init_graph => undef, # L |
24
|
|
|
|
|
|
|
# for initializations |
25
|
|
|
|
|
|
|
_init_first => undef, # Graph node for initialization - the first |
26
|
|
|
|
|
|
|
# init operation to be performed. |
27
|
|
|
|
|
|
|
|
28
|
|
|
|
|
|
|
# TODO? also support fini to run operations after _graph runs? |
29
|
8
|
|
|
8
|
|
710
|
}; |
|
8
|
|
|
|
|
22
|
|
30
|
|
|
|
|
|
|
|
31
|
8
|
|
|
8
|
|
8076
|
use Data::Hopen qw(hlog getparameters *QUIET); |
|
8
|
|
|
|
|
18
|
|
|
8
|
|
|
|
|
868
|
|
32
|
8
|
|
|
8
|
|
3814
|
use Data::Hopen::G::Goal; |
|
8
|
|
|
|
|
24
|
|
|
8
|
|
|
|
|
297
|
|
33
|
8
|
|
|
8
|
|
1412
|
use Data::Hopen::G::Link; |
|
8
|
|
|
|
|
19
|
|
|
8
|
|
|
|
|
210
|
|
34
|
8
|
|
|
8
|
|
43
|
use Data::Hopen::G::Node; |
|
8
|
|
|
|
|
16
|
|
|
8
|
|
|
|
|
162
|
|
35
|
8
|
|
|
8
|
|
3726
|
use Data::Hopen::G::CollectOp; |
|
8
|
|
|
|
|
21
|
|
|
8
|
|
|
|
|
295
|
|
36
|
8
|
|
|
8
|
|
54
|
use Data::Hopen::Util::Data qw(forward_opts); |
|
8
|
|
|
|
|
17
|
|
|
8
|
|
|
|
|
348
|
|
37
|
8
|
|
|
8
|
|
3783
|
use Data::Hopen::OrderedPredecessorGraph; |
|
8
|
|
|
|
|
31
|
|
|
8
|
|
|
|
|
316
|
|
38
|
8
|
|
|
8
|
|
350
|
use Getargs::Mixed; # parameters, which doesn't permit undef |
|
8
|
|
|
|
|
28
|
|
|
8
|
|
|
|
|
547
|
|
39
|
8
|
|
|
8
|
|
52
|
use Hash::Merge; |
|
8
|
|
|
|
|
20
|
|
|
8
|
|
|
|
|
312
|
|
40
|
8
|
|
|
8
|
|
7750
|
use Regexp::Assemble; |
|
8
|
|
|
|
|
133767
|
|
|
8
|
|
|
|
|
316
|
|
41
|
8
|
|
|
8
|
|
70
|
use Scalar::Util qw(refaddr); |
|
8
|
|
|
|
|
18
|
|
|
8
|
|
|
|
|
423
|
|
42
|
8
|
|
|
8
|
|
51
|
use Storable (); |
|
8
|
|
|
|
|
18
|
|
|
8
|
|
|
|
|
182
|
|
43
|
|
|
|
|
|
|
|
44
|
|
|
|
|
|
|
# Class data {{{1 |
45
|
|
|
|
|
|
|
|
46
|
|
|
|
|
|
|
use constant { |
47
|
8
|
|
|
|
|
17486
|
LINKS => 'link_list', # Graph edge attr: array of DHG::Link instances |
48
|
8
|
|
|
8
|
|
43
|
}; |
|
8
|
|
|
|
|
17
|
|
49
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
# A counter used for making unique names |
51
|
|
|
|
|
|
|
my $_id_counter = 0; # threads: make shared |
52
|
|
|
|
|
|
|
|
53
|
|
|
|
|
|
|
# }}}1 |
54
|
|
|
|
|
|
|
# Docs {{{1 |
55
|
|
|
|
|
|
|
|
56
|
|
|
|
|
|
|
=head1 NAME |
57
|
|
|
|
|
|
|
|
58
|
|
|
|
|
|
|
Data::Hopen::G::DAG - A hopen build graph |
59
|
|
|
|
|
|
|
|
60
|
|
|
|
|
|
|
=head1 SYNOPSIS |
61
|
|
|
|
|
|
|
|
62
|
|
|
|
|
|
|
This class encapsulates the DAG for a particular set of one or more goals. |
63
|
|
|
|
|
|
|
It is itself a L so that it can be composed into |
64
|
|
|
|
|
|
|
other DAGs. |
65
|
|
|
|
|
|
|
|
66
|
|
|
|
|
|
|
=head1 ATTRIBUTES |
67
|
|
|
|
|
|
|
|
68
|
|
|
|
|
|
|
=head2 goals |
69
|
|
|
|
|
|
|
|
70
|
|
|
|
|
|
|
Arrayref of the goals for this DAG. |
71
|
|
|
|
|
|
|
|
72
|
|
|
|
|
|
|
=head2 default_goal |
73
|
|
|
|
|
|
|
|
74
|
|
|
|
|
|
|
The default goal for this DAG. |
75
|
|
|
|
|
|
|
|
76
|
|
|
|
|
|
|
=head2 winner |
77
|
|
|
|
|
|
|
|
78
|
|
|
|
|
|
|
When a node has multiple predecessors, their outputs are combined using |
79
|
|
|
|
|
|
|
L to form the input to that node. This sets the C |
80
|
|
|
|
|
|
|
precedence. Valid values (case-insensitive) are: |
81
|
|
|
|
|
|
|
|
82
|
|
|
|
|
|
|
=over |
83
|
|
|
|
|
|
|
|
84
|
|
|
|
|
|
|
=item C or C<'combine'> |
85
|
|
|
|
|
|
|
|
86
|
|
|
|
|
|
|
(the default): L. Same-name keys |
87
|
|
|
|
|
|
|
are merged, so no data is lost. |
88
|
|
|
|
|
|
|
|
89
|
|
|
|
|
|
|
=item C<'first'> or C<'keep'> |
90
|
|
|
|
|
|
|
|
91
|
|
|
|
|
|
|
L. The first predecessor to add a value |
92
|
|
|
|
|
|
|
under a particular key will win. |
93
|
|
|
|
|
|
|
|
94
|
|
|
|
|
|
|
=item C<'last'> or C<'replace'> |
95
|
|
|
|
|
|
|
|
96
|
|
|
|
|
|
|
L. The last predecessor to add a value |
97
|
|
|
|
|
|
|
under a particular key will win. |
98
|
|
|
|
|
|
|
|
99
|
|
|
|
|
|
|
=back |
100
|
|
|
|
|
|
|
|
101
|
|
|
|
|
|
|
=head2 _graph |
102
|
|
|
|
|
|
|
|
103
|
|
|
|
|
|
|
The actual L. If you find that you have to use it, please open an |
104
|
|
|
|
|
|
|
issue so we can see about providing a documented API for your use case! |
105
|
|
|
|
|
|
|
|
106
|
|
|
|
|
|
|
=head2 _final |
107
|
|
|
|
|
|
|
|
108
|
|
|
|
|
|
|
The node to which all goals are connected. |
109
|
|
|
|
|
|
|
|
110
|
|
|
|
|
|
|
=head2 _init_graph |
111
|
|
|
|
|
|
|
|
112
|
|
|
|
|
|
|
A separate L of operations that will run before all the operations |
113
|
|
|
|
|
|
|
in L. This is because I don't want to add an edge to every |
114
|
|
|
|
|
|
|
single node just to force the topological sort to work out. |
115
|
|
|
|
|
|
|
|
116
|
|
|
|
|
|
|
=head2 _init_first |
117
|
|
|
|
|
|
|
|
118
|
|
|
|
|
|
|
The first node to be run in _init_graph. |
119
|
|
|
|
|
|
|
|
120
|
|
|
|
|
|
|
=head1 FUNCTIONS |
121
|
|
|
|
|
|
|
|
122
|
|
|
|
|
|
|
=cut |
123
|
|
|
|
|
|
|
|
124
|
|
|
|
|
|
|
# }}}1 |
125
|
|
|
|
|
|
|
|
126
|
|
|
|
|
|
|
=head2 _run |
127
|
|
|
|
|
|
|
|
128
|
|
|
|
|
|
|
Traverses the graph. The DAG is similar to a subroutine in this respect. The |
129
|
|
|
|
|
|
|
outputs from all the goals of the DAG are aggregated and provided as the |
130
|
|
|
|
|
|
|
outputs of the DAG. The output is a hash keyed by the name of each goal, with |
131
|
|
|
|
|
|
|
each goal's outputs as the values under that name. Usage: |
132
|
|
|
|
|
|
|
|
133
|
|
|
|
|
|
|
my $hrOutputs = $dag->run([-context=>$scope][, other options]) |
134
|
|
|
|
|
|
|
|
135
|
|
|
|
|
|
|
C<$scope> must be a L or subclass if provided. |
136
|
|
|
|
|
|
|
Other options are as L. |
137
|
|
|
|
|
|
|
|
138
|
|
|
|
|
|
|
When evaluating a node, the edges from its predecessors are traversed in |
139
|
|
|
|
|
|
|
the order those predecessors were added to the graph. |
140
|
|
|
|
|
|
|
|
141
|
|
|
|
|
|
|
=cut |
142
|
|
|
|
|
|
|
|
143
|
|
|
|
|
|
|
# The implementation of run(). $self->scope has already been linked to the context. |
144
|
|
|
|
|
|
|
sub _run { |
145
|
30
|
|
|
30
|
|
180
|
my ($self, %args) = getparameters('self', [qw(; visitor)], @_); |
146
|
30
|
|
|
|
|
1398
|
my $retval = {}; |
147
|
|
|
|
|
|
|
|
148
|
|
|
|
|
|
|
# --- Get the initialization ops --- |
149
|
|
|
|
|
|
|
|
150
|
30
|
|
|
|
|
74
|
my @init_order = eval { $self->_init_graph->toposort }; |
|
30
|
|
|
|
|
755
|
|
151
|
30
|
100
|
|
|
|
1446
|
die "Initializations contain a cycle!" if $@; |
152
|
29
|
100
|
|
|
|
823
|
@init_order = () if $self->_init_graph->vertices == 1; # no init nodes => skip |
153
|
|
|
|
|
|
|
|
154
|
|
|
|
|
|
|
# --- Get the runtime ops --- |
155
|
|
|
|
|
|
|
|
156
|
29
|
|
|
|
|
934
|
my @order = eval { $self->_graph->toposort }; |
|
29
|
|
|
|
|
557
|
|
157
|
|
|
|
|
|
|
# TODO someday support multi-core-friendly topo-sort, so nodes can run |
158
|
|
|
|
|
|
|
# in parallel until they block each other. |
159
|
29
|
100
|
|
|
|
2092
|
die "Graph contains a cycle!" if $@; |
160
|
|
|
|
|
|
|
|
161
|
|
|
|
|
|
|
# Remove _final from the order for now - I don't yet know what it means |
162
|
|
|
|
|
|
|
# to traverse _final. |
163
|
28
|
50
|
66
|
|
|
909
|
warn "Last item in order isn't _final! This might indicate a bug in hopen, or that some graph edges are missing." |
164
|
|
|
|
|
|
|
unless $QUIET or refaddr $order[$#order] == refaddr $self->_final; |
165
|
|
|
|
|
|
|
|
166
|
28
|
|
|
|
|
1370
|
@order = grep { refaddr $_ != refaddr $self->_final } @order; |
|
100
|
|
|
|
|
1831
|
|
167
|
|
|
|
|
|
|
|
168
|
|
|
|
|
|
|
# --- Check for non-connected ops, and goals with no inputs --- |
169
|
|
|
|
|
|
|
|
170
|
28
|
100
|
|
|
|
217
|
unless($QUIET) { |
171
|
27
|
|
|
|
|
477
|
foreach my $node ($self->_graph->isolated_vertices) { |
172
|
1
|
|
|
|
|
1322
|
warn "Node @{[$node->name]} is not connected to any other nodes"; |
|
1
|
|
|
|
|
7
|
|
173
|
|
|
|
|
|
|
} |
174
|
|
|
|
|
|
|
|
175
|
27
|
|
|
|
|
37018
|
foreach my $goal (@{$self->goals}) { |
|
27
|
|
|
|
|
665
|
|
176
|
27
|
100
|
|
|
|
602
|
warn "Goal @{[$goal->name]} has no inputs" |
|
1
|
|
|
|
|
292
|
|
177
|
|
|
|
|
|
|
if $self->_graph->is_predecessorless_vertex($goal); |
178
|
|
|
|
|
|
|
} |
179
|
|
|
|
|
|
|
} |
180
|
|
|
|
|
|
|
|
181
|
|
|
|
|
|
|
# --- Set up for the merge --- |
182
|
|
|
|
|
|
|
|
183
|
28
|
|
|
|
|
7474
|
state $STRATEGIES = { # regex => strategy |
184
|
|
|
|
|
|
|
'(|combine)' => 'combine', |
185
|
|
|
|
|
|
|
'(first|keep)' => 'keep', |
186
|
|
|
|
|
|
|
'(last|replace)' => 'replace', |
187
|
|
|
|
|
|
|
}; |
188
|
28
|
|
|
|
|
1143
|
state $STRATEGY_MAP = Regexp::Assemble->new->flags('i')->track(1) |
189
|
|
|
|
|
|
|
->anchor_string_begin->anchor_string_end |
190
|
|
|
|
|
|
|
->add(keys %$STRATEGIES); |
191
|
|
|
|
|
|
|
|
192
|
28
|
|
100
|
|
|
4755
|
my $merge_strategy_idx = $STRATEGY_MAP->match($self->winner // ''); |
193
|
28
|
100
|
|
|
|
5960
|
die "Invalid winner value @{[$self->winner]}" unless defined $merge_strategy_idx; |
|
5
|
|
|
|
|
88
|
|
194
|
23
|
|
|
|
|
78
|
my $merge_strategy = $STRATEGIES->{$merge_strategy_idx}; |
195
|
|
|
|
|
|
|
|
196
|
|
|
|
|
|
|
# --- Traverse --- |
197
|
|
|
|
|
|
|
|
198
|
|
|
|
|
|
|
# Note: while hacking, please make sure Goal nodes can appear |
199
|
|
|
|
|
|
|
# anywhere in the graph. |
200
|
|
|
|
|
|
|
|
201
|
23
|
|
|
18
|
|
197
|
hlog { my $x = 'Traversing DAG ' . $self->name; $x, '*' x (76-length($x)) }; |
|
18
|
|
|
|
|
99
|
|
|
18
|
|
|
|
|
101
|
|
202
|
|
|
|
|
|
|
|
203
|
23
|
|
|
|
|
707
|
my $graph = $self->_init_graph; |
204
|
23
|
|
|
|
|
170
|
foreach my $node (@init_order, undef, @order) { |
205
|
|
|
|
|
|
|
|
206
|
84
|
100
|
|
|
|
843
|
if(!defined($node)) { # undef is the marker between init and run |
207
|
23
|
|
|
|
|
381
|
$graph = $self->_graph; |
208
|
23
|
|
|
|
|
123
|
next; |
209
|
|
|
|
|
|
|
} |
210
|
|
|
|
|
|
|
|
211
|
|
|
|
|
|
|
# Inputs to this node. These are different from the DAG's inputs. |
212
|
|
|
|
|
|
|
# The scope stack is (outer to inner) DAG's inputs, DAG's overrides, |
213
|
|
|
|
|
|
|
# then $node_inputs, then the individual node's overrides. |
214
|
61
|
|
|
|
|
293
|
my $node_inputs = Data::Hopen::Scope::Hash->new; |
215
|
|
|
|
|
|
|
# TODO make this a DH::Scope::Inputs once it's implemented |
216
|
61
|
|
|
|
|
2706
|
$node_inputs->outer($self->scope); |
217
|
|
|
|
|
|
|
# Data specifically being provided to the current node, e.g., |
218
|
|
|
|
|
|
|
# on input edges, beats the scope of the DAG as a whole. |
219
|
61
|
|
|
|
|
2298
|
$node_inputs->local(true); |
220
|
|
|
|
|
|
|
# A CollectOp won't reach above the node's inputs by default. |
221
|
61
|
|
|
|
|
1254
|
$node_inputs->merge_strategy($merge_strategy); |
222
|
|
|
|
|
|
|
|
223
|
|
|
|
|
|
|
# Iterate over each node's edges and process any Links |
224
|
61
|
|
|
|
|
443
|
foreach my $pred ($graph->ordered_predecessors($node)) { |
225
|
35
|
|
|
29
|
|
22312
|
hlog { ('From', $pred->name, 'to', $node->name) }; |
|
29
|
|
|
|
|
181
|
|
226
|
|
|
|
|
|
|
|
227
|
|
|
|
|
|
|
# Goals do not feed outputs to other Goals. This is so you can |
228
|
|
|
|
|
|
|
# add edges between Goals to set their order while keeping the |
229
|
|
|
|
|
|
|
# data for each Goal separate. |
230
|
|
|
|
|
|
|
# TODO add tests for this. Also TODO decide whether this is |
231
|
|
|
|
|
|
|
# actually the Right Thing! |
232
|
35
|
50
|
|
|
|
240
|
next if eval { $pred->DOES('Data::Hopen::G::Goal') }; |
|
35
|
|
|
|
|
495
|
|
233
|
|
|
|
|
|
|
|
234
|
35
|
|
|
|
|
185
|
my $links = $graph->get_edge_attribute($pred, $node, LINKS); |
235
|
|
|
|
|
|
|
|
236
|
|
|
|
|
|
|
# Simple case (no links): predecessor's outputs become our inputs |
237
|
35
|
100
|
|
|
|
35527
|
unless($links) { |
238
|
27
|
|
|
23
|
|
161
|
hlog { ' -- no links' }; |
|
23
|
|
|
|
|
53
|
|
239
|
27
|
|
|
|
|
169
|
$node_inputs->merge(%{$pred->outputs}); |
|
27
|
|
|
|
|
165
|
|
240
|
|
|
|
|
|
|
# TODO specify which set these are. |
241
|
|
|
|
|
|
|
# Use the predecessor's identity as the set. |
242
|
27
|
|
|
|
|
71
|
next; |
243
|
|
|
|
|
|
|
} |
244
|
|
|
|
|
|
|
|
245
|
|
|
|
|
|
|
# More complex case: Process all the links |
246
|
|
|
|
|
|
|
|
247
|
|
|
|
|
|
|
# Helper function to wrap a hashref in the right scope for a link input |
248
|
|
|
|
|
|
|
local *make_link_inputs = sub { |
249
|
19
|
|
|
19
|
|
38
|
my $hrIn = shift; |
250
|
19
|
|
|
|
|
66
|
my $scLinkInputs = Data::Hopen::Scope::Hash->new->put(%$hrIn); |
251
|
|
|
|
|
|
|
# All links get the same outer scope --- they are parallel, |
252
|
|
|
|
|
|
|
# not in series. |
253
|
|
|
|
|
|
|
# TODO? use the predecessor's identity as the set. |
254
|
19
|
|
|
|
|
345
|
$scLinkInputs->outer($self->scope); |
255
|
|
|
|
|
|
|
# The links run at the same scope level as the node. |
256
|
19
|
|
|
|
|
1119
|
$scLinkInputs->local(true); |
257
|
19
|
|
|
|
|
125
|
return $scLinkInputs; |
258
|
8
|
|
|
|
|
51
|
}; |
259
|
|
|
|
|
|
|
|
260
|
|
|
|
|
|
|
# Make the first link's input scope |
261
|
8
|
|
|
|
|
36
|
my $hrPredOutputs = $pred->outputs; |
262
|
|
|
|
|
|
|
# In one test, outputs was undef if not on its own line. |
263
|
8
|
|
|
|
|
23
|
my $scLinkInputs = make_link_inputs($hrPredOutputs); |
264
|
|
|
|
|
|
|
|
265
|
|
|
|
|
|
|
# Run the links in series - not parallel! |
266
|
8
|
|
|
|
|
53
|
my $hrLinkOutputs = $scLinkInputs->as_hashref(-levels=>'local'); |
267
|
8
|
|
|
|
|
29
|
foreach my $link (@$links) { |
268
|
11
|
|
|
9
|
|
114
|
hlog { ('From', $pred->name, 'via', $link->name, 'to', $node->name) }; |
|
9
|
|
|
|
|
47
|
|
269
|
|
|
|
|
|
|
|
270
|
11
|
|
|
|
|
129
|
$hrLinkOutputs = $link->run( |
271
|
|
|
|
|
|
|
-context=>$scLinkInputs, |
272
|
|
|
|
|
|
|
# visitor not passed to links. |
273
|
|
|
|
|
|
|
); |
274
|
11
|
|
|
|
|
175
|
$scLinkInputs = make_link_inputs($hrLinkOutputs); |
275
|
|
|
|
|
|
|
} #foreach incoming link |
276
|
|
|
|
|
|
|
|
277
|
8
|
|
|
|
|
159
|
$node_inputs->merge(%$hrLinkOutputs); |
278
|
|
|
|
|
|
|
# TODO specify which set these are. |
279
|
|
|
|
|
|
|
|
280
|
|
|
|
|
|
|
} #foreach predecessor node |
281
|
|
|
|
|
|
|
|
282
|
61
|
|
|
|
|
415
|
my $step_output = $node->run(-context=>$node_inputs, |
283
|
|
|
|
|
|
|
forward_opts(\%args, {'-'=>1}, 'visitor') |
284
|
|
|
|
|
|
|
); |
285
|
61
|
|
|
|
|
1056
|
$node->outputs($step_output); |
286
|
|
|
|
|
|
|
|
287
|
|
|
|
|
|
|
# Give the visitor a chance, and stash the results if necessary. |
288
|
61
|
100
|
|
|
|
115
|
if(eval { $node->DOES('Data::Hopen::G::Goal') }) { |
|
61
|
|
|
|
|
508
|
|
289
|
23
|
100
|
|
|
|
103
|
$args{visitor}->visit_goal($node, $node_inputs) if $args{visitor}; |
290
|
|
|
|
|
|
|
|
291
|
|
|
|
|
|
|
# Save the result if there is one. Don't save {}. |
292
|
|
|
|
|
|
|
# use $node->outputs, not $step_output, since the visitor may |
293
|
|
|
|
|
|
|
# alter $node->outputs. |
294
|
23
|
100
|
|
|
|
70
|
$retval->{$node->name} = $node->outputs if keys %{$node->outputs}; |
|
23
|
|
|
|
|
95
|
|
295
|
|
|
|
|
|
|
} else { |
296
|
38
|
100
|
|
|
|
133
|
$args{visitor}->visit_node($node, $node_inputs) if $args{visitor}; |
297
|
|
|
|
|
|
|
} |
298
|
|
|
|
|
|
|
|
299
|
47
|
|
|
47
|
|
115
|
hlog { 'Finished node', $node->name, 'with outputs', |
300
|
61
|
|
|
|
|
392
|
Dumper $node->outputs } 10; |
301
|
|
|
|
|
|
|
|
302
|
|
|
|
|
|
|
} #foreach node in topo-sort order |
303
|
|
|
|
|
|
|
|
304
|
23
|
|
|
|
|
1350
|
return $retval; |
305
|
|
|
|
|
|
|
} #run() |
306
|
|
|
|
|
|
|
|
307
|
|
|
|
|
|
|
=head1 ADDING DATA |
308
|
|
|
|
|
|
|
|
309
|
|
|
|
|
|
|
=head2 goal |
310
|
|
|
|
|
|
|
|
311
|
|
|
|
|
|
|
Creates a goal of the DAG. Goals are names for sequences of operations, |
312
|
|
|
|
|
|
|
akin to top-level Makefile targets. Usage: |
313
|
|
|
|
|
|
|
|
314
|
|
|
|
|
|
|
my $goalOp = $dag->goal('name') |
315
|
|
|
|
|
|
|
|
316
|
|
|
|
|
|
|
Returns the L node that is the goal. By default, any |
317
|
|
|
|
|
|
|
inputs passed into a goal are provided as outputs of that goal, and are |
318
|
|
|
|
|
|
|
saved as outputs of the DAG under the goal's name. |
319
|
|
|
|
|
|
|
|
320
|
|
|
|
|
|
|
The first call to C also sets L. |
321
|
|
|
|
|
|
|
|
322
|
|
|
|
|
|
|
=cut |
323
|
|
|
|
|
|
|
|
324
|
|
|
|
|
|
|
sub goal { |
325
|
17
|
100
|
|
17
|
1
|
2910
|
my $self = shift or croak 'Need an instance'; |
326
|
16
|
100
|
|
|
|
194
|
my $name = shift or croak 'Need a goal name'; |
327
|
15
|
|
|
|
|
97
|
my $goal = Data::Hopen::G::Goal->new(name => $name); |
328
|
15
|
|
|
|
|
377
|
$self->_graph->add_vertex($goal); |
329
|
|
|
|
|
|
|
#$self->_node_by_name->{$name} = $goal; |
330
|
15
|
|
|
|
|
4384
|
$self->_graph->add_edge($goal, $self->_final); |
331
|
15
|
100
|
|
|
|
385
|
$self->default_goal($goal) unless $self->default_goal; |
332
|
15
|
|
|
|
|
370
|
push @{$self->goals}, $goal; |
|
15
|
|
|
|
|
257
|
|
333
|
15
|
|
|
|
|
57
|
return $goal; |
334
|
|
|
|
|
|
|
} #goal() |
335
|
|
|
|
|
|
|
|
336
|
|
|
|
|
|
|
=head2 connect |
337
|
|
|
|
|
|
|
|
338
|
|
|
|
|
|
|
=over 4 |
339
|
|
|
|
|
|
|
|
340
|
|
|
|
|
|
|
=item - C<< DAG:connect(, , , ) >> |
341
|
|
|
|
|
|
|
|
342
|
|
|
|
|
|
|
B. |
343
|
|
|
|
|
|
|
Connects output C of operation C as input C of |
344
|
|
|
|
|
|
|
operation C. No processing is done between output and input. |
345
|
|
|
|
|
|
|
C and C can be anything usable as a table index, provided |
346
|
|
|
|
|
|
|
that table index appears in the corresponding operation's descriptor. |
347
|
|
|
|
|
|
|
|
348
|
|
|
|
|
|
|
=item - C<< DAG:connect(, ) >> |
349
|
|
|
|
|
|
|
|
350
|
|
|
|
|
|
|
Creates a dependency edge from C to C, indicating that C must be |
351
|
|
|
|
|
|
|
run before C. Does not transfer any data from C to C. |
352
|
|
|
|
|
|
|
|
353
|
|
|
|
|
|
|
=item - C<< DAG:connect(, , ) >> |
354
|
|
|
|
|
|
|
|
355
|
|
|
|
|
|
|
Connects C to C via L C. |
356
|
|
|
|
|
|
|
C may be undef, in which case this is treated as the two-parameter form. |
357
|
|
|
|
|
|
|
|
358
|
|
|
|
|
|
|
If there are already link(s) on the edge from C to C, the new link |
359
|
|
|
|
|
|
|
is added after the last existing link. |
360
|
|
|
|
|
|
|
|
361
|
|
|
|
|
|
|
=back |
362
|
|
|
|
|
|
|
|
363
|
|
|
|
|
|
|
TODO return the name of the edge? The edge instance itself? Maybe a |
364
|
|
|
|
|
|
|
fluent interface to the DAG for chaining C calls? |
365
|
|
|
|
|
|
|
|
366
|
|
|
|
|
|
|
TODO remove the out-edge and in-edge parameters? |
367
|
|
|
|
|
|
|
|
368
|
|
|
|
|
|
|
=cut |
369
|
|
|
|
|
|
|
|
370
|
|
|
|
|
|
|
sub connect { |
371
|
21
|
100
|
|
21
|
1
|
9358
|
my $self = shift or croak 'Need an instance'; |
372
|
20
|
|
|
|
|
57
|
my ($op1, $out_edge, $in_edge, $op2, $link); |
373
|
|
|
|
|
|
|
|
374
|
|
|
|
|
|
|
# Unpack args |
375
|
|
|
|
|
|
|
#if(@_ == 4) { |
376
|
|
|
|
|
|
|
# ($op2, $out_edge, $in_edge, $op2) = @_; |
377
|
|
|
|
|
|
|
#} else the following |
378
|
20
|
100
|
|
|
|
90
|
if(@_ == 3) { |
|
|
100
|
|
|
|
|
|
379
|
12
|
|
|
|
|
26
|
($op1, $link, $op2) = @_; |
380
|
|
|
|
|
|
|
} elsif(@_ == 2) { |
381
|
5
|
|
|
|
|
12
|
($op1, $op2) = @_; |
382
|
|
|
|
|
|
|
} else { |
383
|
3
|
|
|
|
|
41
|
die "Invalid arguments"; |
384
|
|
|
|
|
|
|
} |
385
|
|
|
|
|
|
|
|
386
|
|
|
|
|
|
|
#my $out_edge = false; # No outputs TODO use these? |
387
|
|
|
|
|
|
|
#my $in_edge = false; # No inputs |
388
|
|
|
|
|
|
|
|
389
|
13
|
100
|
|
13
|
|
66
|
hlog { 'DAG::connect(): Edge from', $op1->name, |
390
|
|
|
|
|
|
|
'via', $link ? $link->name : '(no link)', |
391
|
17
|
|
|
|
|
134
|
'to', $op2->name }; |
392
|
|
|
|
|
|
|
|
393
|
|
|
|
|
|
|
# Add it to the graph (idempotent) |
394
|
17
|
|
|
|
|
521
|
$self->_graph->add_edge($op1, $op2); |
395
|
|
|
|
|
|
|
# $self->_node_by_name->{$_->name} = $_ foreach ($op1, $op2); |
396
|
|
|
|
|
|
|
|
397
|
|
|
|
|
|
|
# Save the DHG::Link as an edge attribute (not idempotent!) |
398
|
17
|
100
|
|
|
|
584
|
if($link) { |
399
|
11
|
|
100
|
|
|
338
|
my $attrs = $self->_graph->get_edge_attribute($op1, $op2, LINKS) || []; |
400
|
11
|
|
|
|
|
11307
|
push @$attrs, $link; |
401
|
11
|
|
|
|
|
266
|
$self->_graph->set_edge_attribute($op1, $op2, LINKS, $attrs); |
402
|
|
|
|
|
|
|
} |
403
|
|
|
|
|
|
|
|
404
|
17
|
|
|
|
|
11148
|
return undef; # TODO decide what to return |
405
|
|
|
|
|
|
|
} #connect() |
406
|
|
|
|
|
|
|
|
407
|
|
|
|
|
|
|
=head2 add |
408
|
|
|
|
|
|
|
|
409
|
|
|
|
|
|
|
Add a regular node to the graph. An attempt to add the same node twice will be |
410
|
|
|
|
|
|
|
ignored. Usage: |
411
|
|
|
|
|
|
|
|
412
|
|
|
|
|
|
|
my $node = Data::Hopen::G::Op->new(name=>"whatever"); |
413
|
|
|
|
|
|
|
$dag->add($node); |
414
|
|
|
|
|
|
|
|
415
|
|
|
|
|
|
|
Returns the node, for the sake of chaining. |
416
|
|
|
|
|
|
|
|
417
|
|
|
|
|
|
|
=cut |
418
|
|
|
|
|
|
|
|
419
|
|
|
|
|
|
|
sub add { |
420
|
4
|
|
|
4
|
1
|
2688
|
my ($self, undef, $node) = parameters('self', ['node'], @_); |
421
|
2
|
100
|
|
|
|
102
|
return if $self->_graph->has_vertex($node); |
422
|
1
|
|
|
1
|
|
147
|
hlog { __PACKAGE__, $self->name, 'adding', Dumper($node) } 2; |
|
1
|
|
|
|
|
5
|
|
423
|
|
|
|
|
|
|
|
424
|
1
|
|
|
|
|
31
|
$self->_graph->add_vertex($node); |
425
|
|
|
|
|
|
|
#$self->_node_by_name->{$node->name} = $node if $node->name; |
426
|
|
|
|
|
|
|
|
427
|
1
|
|
|
|
|
308
|
return $node; |
428
|
|
|
|
|
|
|
} #add() |
429
|
|
|
|
|
|
|
|
430
|
|
|
|
|
|
|
=head2 init |
431
|
|
|
|
|
|
|
|
432
|
|
|
|
|
|
|
Add an initialization operation to the graph. Initialization operations run |
433
|
|
|
|
|
|
|
before all other operations. An attempt to add the same initialization |
434
|
|
|
|
|
|
|
operation twice will be ignored. Usage: |
435
|
|
|
|
|
|
|
|
436
|
|
|
|
|
|
|
my $op = Data::Hopen::G::Op->new(name=>"whatever"); |
437
|
|
|
|
|
|
|
$dag->init($op[, $first]); |
438
|
|
|
|
|
|
|
|
439
|
|
|
|
|
|
|
If C<$first> is truthy, the op will be run before anything already in the |
440
|
|
|
|
|
|
|
graph. However, later calls to C with C<$first> set will push |
441
|
|
|
|
|
|
|
operations even before C<$op>. |
442
|
|
|
|
|
|
|
|
443
|
|
|
|
|
|
|
Returns the node, for the sake of chaining. |
444
|
|
|
|
|
|
|
|
445
|
|
|
|
|
|
|
=cut |
446
|
|
|
|
|
|
|
|
447
|
|
|
|
|
|
|
sub init { |
448
|
6
|
100
|
|
6
|
1
|
5036
|
my $self = shift or croak 'Need an instance'; |
449
|
5
|
100
|
|
|
|
330
|
my $op = shift or croak 'Need an op'; |
450
|
4
|
|
|
|
|
9
|
my $first = shift; |
451
|
4
|
100
|
|
|
|
99
|
return if $self->_init_graph->has_vertex($op); |
452
|
|
|
|
|
|
|
|
453
|
3
|
|
|
|
|
451
|
$self->_init_graph->add_vertex($op); |
454
|
|
|
|
|
|
|
#$self->_node_by_name->{$op->name} = $op; |
455
|
|
|
|
|
|
|
|
456
|
3
|
100
|
|
|
|
782
|
if($first) { # $op becomes the new _init_first node |
457
|
1
|
|
|
|
|
23
|
$self->_init_graph->add_edge($op, $self->_init_first); |
458
|
1
|
|
|
|
|
26
|
$self->_init_first($op); |
459
|
|
|
|
|
|
|
} else { # Not first, so can happen anytime. Add it after the |
460
|
|
|
|
|
|
|
# current first node. |
461
|
2
|
|
|
|
|
43
|
$self->_init_graph->add_edge($self->_init_first, $op); |
462
|
|
|
|
|
|
|
} |
463
|
|
|
|
|
|
|
|
464
|
3
|
|
|
|
|
12
|
return $op; |
465
|
|
|
|
|
|
|
} #init() |
466
|
|
|
|
|
|
|
|
467
|
|
|
|
|
|
|
=head1 ACCESSORS |
468
|
|
|
|
|
|
|
|
469
|
|
|
|
|
|
|
=head2 empty |
470
|
|
|
|
|
|
|
|
471
|
|
|
|
|
|
|
Returns truthy if the only nodes in the graph are internal nodes. |
472
|
|
|
|
|
|
|
Intended for use by hopen files. |
473
|
|
|
|
|
|
|
|
474
|
|
|
|
|
|
|
=cut |
475
|
|
|
|
|
|
|
|
476
|
|
|
|
|
|
|
sub empty { |
477
|
3
|
100
|
|
3
|
1
|
1945
|
my $self = shift or croak 'Need an instance'; |
478
|
2
|
|
|
|
|
57
|
return ($self->_graph->vertices == 1); |
479
|
|
|
|
|
|
|
# _final is the node in an empty() graph. |
480
|
|
|
|
|
|
|
# We don't check the _init_graph since empty() is intended |
481
|
|
|
|
|
|
|
# for use by hopen files, not toolsets. |
482
|
|
|
|
|
|
|
} #empty() |
483
|
|
|
|
|
|
|
|
484
|
|
|
|
|
|
|
=head1 OTHER |
485
|
|
|
|
|
|
|
|
486
|
|
|
|
|
|
|
=head2 BUILD |
487
|
|
|
|
|
|
|
|
488
|
|
|
|
|
|
|
Initialize the instance. |
489
|
|
|
|
|
|
|
|
490
|
|
|
|
|
|
|
=cut |
491
|
|
|
|
|
|
|
|
492
|
|
|
|
|
|
|
sub BUILD { |
493
|
|
|
|
|
|
|
#use Data::Dumper; |
494
|
|
|
|
|
|
|
#say Dumper(\@_); |
495
|
17
|
100
|
|
17
|
1
|
5931
|
my $self = shift or croak 'Need an instance'; |
496
|
16
|
|
|
|
|
51
|
my $hrArgs = shift; |
497
|
|
|
|
|
|
|
|
498
|
|
|
|
|
|
|
# DAGs always have names |
499
|
16
|
100
|
|
|
|
53
|
$self->name('__R_DAG_' . $_id_counter++) unless $self->has_custom_name; |
500
|
|
|
|
|
|
|
|
501
|
|
|
|
|
|
|
# Graph of normal operations |
502
|
16
|
|
|
|
|
144
|
my $graph = Data::Hopen::OrderedPredecessorGraph->new( directed => true, |
503
|
|
|
|
|
|
|
refvertexed => true); |
504
|
16
|
|
|
|
|
20156
|
my $final = Data::Hopen::G::Node->new( |
505
|
|
|
|
|
|
|
name => '__R_DAG_ROOT' . $_id_counter++); |
506
|
16
|
|
|
|
|
1307
|
$graph->add_vertex($final); |
507
|
16
|
|
|
|
|
5702
|
$self->_graph($graph); |
508
|
16
|
|
|
|
|
379
|
$self->_final($final); |
509
|
|
|
|
|
|
|
|
510
|
|
|
|
|
|
|
# Graph of initialization operations |
511
|
16
|
|
|
|
|
153
|
my $init_graph = Data::Hopen::OrderedPredecessorGraph->new( directed => true, |
512
|
|
|
|
|
|
|
refvertexed => true); |
513
|
16
|
|
|
|
|
2334
|
my $init = Data::Hopen::G::CollectOp->new( |
514
|
|
|
|
|
|
|
name => '__R_DAG_INIT' . $_id_counter++); |
515
|
16
|
|
|
|
|
1082
|
$init_graph->add_vertex($init); |
516
|
|
|
|
|
|
|
|
517
|
16
|
|
|
|
|
4714
|
$self->_init_graph($init_graph); |
518
|
16
|
|
|
|
|
364
|
$self->_init_first($init); |
519
|
|
|
|
|
|
|
} #BUILD() |
520
|
|
|
|
|
|
|
|
521
|
|
|
|
|
|
|
1; |
522
|
|
|
|
|
|
|
# Rest of the docs {{{1 |
523
|
|
|
|
|
|
|
__END__ |