File Coverage

blib/lib/BioX/Workflow/Command/run/Rules/Directives/Types/Roles/File.pm

Criterion	Covered	Total	%
statement	6	21	28.5
branch	0	4	0.0
condition			n/a
subroutine	2	3	66.6
pod	0	1	0.0
total	8	29	27.5

package BioX::Workflow::Command::run::Rules::Directives::Types::Roles::File;

use Moose::Role;
use namespace::autoclean;

sub check_file_exists {
    my $self = shift;
    my $k    = shift;
    my $v    = shift;

    if ( !exists $v->{file} ) {
        $self->app_log->warn( 'You have a key ' . $k );
        $self->app_log->warn(
'This maps to a csv file type that requires file and optionally requires options'
        );
        $self->$k($v);
        return 0;
    }

    my $file = $self->interpol_directive( $v->{file} );
    if ( !-e $file ) {
        $self->app_log->warn( 'You have a key ' . $k );
        $self->app_log->warn( 'File: ' . $file. ' does not exist.' );
        $self->$k($v);
        return 0;
    }

    return $file;
}

1;