line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
1
|
|
|
|
|
|
|
# |
2
|
|
|
|
|
|
|
# BioPerl module for Bio::SeqFeature::Gene::Poly_A_site |
3
|
|
|
|
|
|
|
# |
4
|
|
|
|
|
|
|
# Please direct questions and support issues to |
5
|
|
|
|
|
|
|
# |
6
|
|
|
|
|
|
|
# Cared for by David Block |
7
|
|
|
|
|
|
|
# |
8
|
|
|
|
|
|
|
# Copyright David Block |
9
|
|
|
|
|
|
|
# |
10
|
|
|
|
|
|
|
# You may distribute this module under the same terms as perl itself |
11
|
|
|
|
|
|
|
|
12
|
|
|
|
|
|
|
# POD documentation - main docs before the code |
13
|
|
|
|
|
|
|
|
14
|
|
|
|
|
|
|
=head1 NAME |
15
|
|
|
|
|
|
|
|
16
|
|
|
|
|
|
|
Bio::SeqFeature::Gene::Poly_A_site - poly A feature |
17
|
|
|
|
|
|
|
|
18
|
|
|
|
|
|
|
=head1 SYNOPSIS |
19
|
|
|
|
|
|
|
|
20
|
|
|
|
|
|
|
Give standard usage here |
21
|
|
|
|
|
|
|
|
22
|
|
|
|
|
|
|
=head1 DESCRIPTION |
23
|
|
|
|
|
|
|
|
24
|
|
|
|
|
|
|
Inherits from L. |
25
|
|
|
|
|
|
|
|
26
|
|
|
|
|
|
|
=head1 FEEDBACK |
27
|
|
|
|
|
|
|
|
28
|
|
|
|
|
|
|
=head2 Mailing Lists |
29
|
|
|
|
|
|
|
|
30
|
|
|
|
|
|
|
User feedback is an integral part of the evolution of this and other |
31
|
|
|
|
|
|
|
Bioperl modules. Send your comments and suggestions preferably to |
32
|
|
|
|
|
|
|
the Bioperl mailing list. Your participation is much appreciated. |
33
|
|
|
|
|
|
|
|
34
|
|
|
|
|
|
|
bioperl-l@bioperl.org - General discussion |
35
|
|
|
|
|
|
|
http://bioperl.org/wiki/Mailing_lists - About the mailing lists |
36
|
|
|
|
|
|
|
|
37
|
|
|
|
|
|
|
=head2 Support |
38
|
|
|
|
|
|
|
|
39
|
|
|
|
|
|
|
Please direct usage questions or support issues to the mailing list: |
40
|
|
|
|
|
|
|
|
41
|
|
|
|
|
|
|
I |
42
|
|
|
|
|
|
|
|
43
|
|
|
|
|
|
|
rather than to the module maintainer directly. Many experienced and |
44
|
|
|
|
|
|
|
reponsive experts will be able look at the problem and quickly |
45
|
|
|
|
|
|
|
address it. Please include a thorough description of the problem |
46
|
|
|
|
|
|
|
with code and data examples if at all possible. |
47
|
|
|
|
|
|
|
|
48
|
|
|
|
|
|
|
=head2 Reporting Bugs |
49
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
Report bugs to the Bioperl bug tracking system to help us keep track |
51
|
|
|
|
|
|
|
of the bugs and their resolution. Bug reports can be submitted via the |
52
|
|
|
|
|
|
|
web: |
53
|
|
|
|
|
|
|
|
54
|
|
|
|
|
|
|
https://github.com/bioperl/bioperl-live/issues |
55
|
|
|
|
|
|
|
|
56
|
|
|
|
|
|
|
=head1 AUTHOR - David Block |
57
|
|
|
|
|
|
|
|
58
|
|
|
|
|
|
|
Email dblock@gene.pbi.nrc.ca |
59
|
|
|
|
|
|
|
|
60
|
|
|
|
|
|
|
=head1 APPENDIX |
61
|
|
|
|
|
|
|
|
62
|
|
|
|
|
|
|
The rest of the documentation details each of the object methods. |
63
|
|
|
|
|
|
|
Internal methods are usually preceded with a _ |
64
|
|
|
|
|
|
|
|
65
|
|
|
|
|
|
|
=cut |
66
|
|
|
|
|
|
|
|
67
|
|
|
|
|
|
|
|
68
|
|
|
|
|
|
|
# Let the code begin... |
69
|
|
|
|
|
|
|
|
70
|
|
|
|
|
|
|
|
71
|
|
|
|
|
|
|
package Bio::SeqFeature::Gene::Poly_A_site; |
72
|
8
|
|
|
8
|
|
1136
|
use strict; |
|
8
|
|
|
|
|
13
|
|
|
8
|
|
|
|
|
227
|
|
73
|
|
|
|
|
|
|
|
74
|
|
|
|
|
|
|
# Object preamble - inherits from Bio::Root::Root |
75
|
|
|
|
|
|
|
|
76
|
|
|
|
|
|
|
|
77
|
8
|
|
|
8
|
|
37
|
use base qw(Bio::SeqFeature::Gene::NC_Feature); |
|
8
|
|
|
|
|
14
|
|
|
8
|
|
|
|
|
893
|
|
78
|
|
|
|
|
|
|
|
79
|
|
|
|
|
|
|
sub new { |
80
|
2
|
|
|
2
|
1
|
6
|
my($class,@args) = @_; |
81
|
|
|
|
|
|
|
|
82
|
2
|
|
|
|
|
9
|
my $self = $class->SUPER::new(@args); |
83
|
|
|
|
|
|
|
|
84
|
|
|
|
|
|
|
} |
85
|
|
|
|
|
|
|
|
86
|
|
|
|
|
|
|
1; |