File Coverage

lib/Bio/Tradis/Analysis/Exceptions.pm

Criterion	Covered	Total	%
statement	3	3	100.0
branch			n/a
condition			n/a
subroutine	1	1	100.0
pod			n/a
total	4	4	100.0

package Bio::Tradis::Analysis::Exceptions;
# ABSTRACT: Custom exceptions
$Bio::Tradis::Analysis::Exceptions::VERSION = '1.3.2';

use Exception::Class (
    Bio::Tradis::Analysis::Exceptions::FailedToOpenAlignmentSlice => { description => 'Couldnt get reads from alignment slice. Error with Samtools or BAM' },
    Bio::Tradis::Analysis::Exceptions::FailedToOpenExpressionResultsSpreadsheetForWriting => { description => 'Couldnt write out the results for expression' },
	Bio::Tradis::Analysis::Exceptions::InvalidInputFiles => { description => 'Invalid inputs, sequence names or lengths are incorrect' },
	Bio::Tradis::Analysis::Exceptions::FailedToCreateNewBAM => { description => 'Couldnt create a new bam file' },
	Bio::Tradis::Analysis::Exceptions::FailedToCreateMpileup => { description => 'Couldnt create an mpileup' },
	Bio::Tradis::Analysis::Exceptions::FailedToOpenFeaturesTabFileForWriting => { description => 'Couldnt write tab file' },
	Bio::Tradis::Analysis::Exceptions::FileNotFound => { description => 'Couldnt find file' },
);

1;

__END__

=pod

=encoding UTF-8

=head1 NAME

Bio::Tradis::Analysis::Exceptions - Custom exceptions

=head1 VERSION

version 1.3.2

=head1 SYNOPSIS

Basic exception catcher

=head1 AUTHOR

Carla Cummins <[e-mail]>

=head1 COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007

=cut