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package Bio::Roary::Output::GroupsMultifastas; |
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$Bio::Roary::Output::GroupsMultifastas::VERSION = '3.11.0'; |
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# ABSTRACT: Take in a list of groups and create multifastas files for each group |
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use Moose; |
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use Bio::Roary::Exceptions; |
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use Bio::Roary::AnalyseGroups; |
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use Bio::Roary::Output::GroupMultifasta; |
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has 'group_names' => ( is => 'ro', isa => 'ArrayRef', required => 1 ); |
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has 'analyse_groups' => ( is => 'ro', isa => 'Bio::Roary::AnalyseGroups', required => 1 ); |
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has 'output_filename_base' => ( is => 'ro', isa => 'Str', default => 'output_groups' ); |
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sub create_files { |
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my ($self) = @_; |
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for my $group_name ( @{ $self->group_names } ) { |
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# Check the group name exists |
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next unless($self->analyse_groups->_groups_to_genes->{$group_name}); |
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my $group_multifasta = Bio::Roary::Output::GroupMultifasta->new( |
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group_name => $group_name, |
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analyse_groups => $self->analyse_groups, |
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output_filename_base => $self->output_filename_base |
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); |
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$group_multifasta->create_file; |
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} |
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1; |
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} |
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no Moose; |
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__PACKAGE__->meta->make_immutable; |
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1; |
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__END__ |
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=pod |
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=encoding UTF-8 |
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=head1 NAME |
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Bio::Roary::Output::GroupsMultifastas - Take in a list of groups and create multifastas files for each group |
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=head1 VERSION |
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version 3.11.0 |
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=head1 SYNOPSIS |
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Take in a list of groups and create multifastas files for each group |
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use Bio::Roary::Output::GroupsMultifastas; |
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my $obj = Bio::Roary::Output::GroupsMultifastas->new( |
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group_names => ['aaa','bbb'], |
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analyse_groups => $analyse_groups |
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); |
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$obj->create_files(); |
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=head1 AUTHOR |
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Andrew J. Page <ap13@sanger.ac.uk> |
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=head1 COPYRIGHT AND LICENSE |
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This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. |
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This is free software, licensed under: |
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The GNU General Public License, Version 3, June 2007 |
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=cut |